Carg23938 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23938
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding KH domain-containing protein PEPPER
Location	Cucurbita_argyrosperma_scaffold_173 : 269981 .. 278054 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATAATTGATGAATAATAAATTAAAAAGATAAAAGTAATTTACATATAAATTAAAATTAATTAACGAATTTATTTCCTCTTTTCCCTTTCTCTTCCTTAATTTTATTAAAACCTCTGCAACTCTTAACCCTAACTCAATAGACTCTTCATCTTTCTCGATGGCCACCAACACAGCTACAGATAATGGCTCCACTGATGCCAACGCCCTCAATTTCAACCCCGAAAGCTCCCCACTTGCCTCTGTAGCTGCTGCAGAACCAGACTCTATGGAAGCCGGTGGCGCTGAATCCGACCTCGATCCCTCTAACCAAGACTACTTGTCTGCTCCGGCTTCGGATTCTGCAGACCATGATGAAAGCCCCAACCATACCGACGCTTCCGATAAAAAGTGGCCCGGATGGCCCGGAGACTGCGTGTTTCGGCTTATTGTACCGGTCGTTAAAGTTGGAAGCATTATTGGGCGCAAGGGCGATCTTATCAAGAAGATGTGCGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGTACTCCTGATCGTGTTGTGAGTGTTTCTTTTAACCTGACCTCTCTCTGGTACCTGTTTTTTTTTTCGAGTCAAAAGCAATCTCCATTTTTGGGTCCCGAGGTTTCGGGGGGAAAAAAGAGAGATCATTCTCCCATCATTGGTTGGTTCCATGGATTTCACAGTAGTTAGTCATAACAAGTTACTTTCTAATTCTTTAACAGAAGCCGCAGAATCTCTGTATATTAGGTTAACTAGAATATCAATTGAACTTATTGGGGAACAAAAGGAGCTTATGTTAAACCTTTTTTTGGTTGTTCAATTGAAGCTTGATCTATAATGGAGGAGGTGCTTCTGAATTCTTCCTTTAGGGAGAAGTTCTAGCTTTTGTGCAATTTTGTGGGACATTGGTGCGAGTGGAATAATAGAATCTTTAGAGAGGTGGAGAGATCAGGTGGGGAGGTTTAGGAGGTGCCTATGTTTAATGCCTCCTTGGTTGTGTCTGTCACTACGTCTTTTATACTTATGAGCTTGGTCTTATTCTTTTGGATTTGAGACCTTTTCTGTAGTTAGGGTTAAGACTCTTTTTTTGTTTGGGAGCTTGTTTTTGCATGCACTTGTATATTCTTTCATTTCTATTAACGGAAGTGTGATATCTGTCCATTTTTCTTGGAAGATTAATTCTCTGTACACATGTTTGAAATGCAGATGTAAGTTCTTATAATTTTTAAGAACATGACAAATTGATATCATTCTTTGAGTCGCTTCTTTAGGAGTAAAAACTTGAAGCATTTTTCCATGGTGGCACAAGCCTCTTATAACCCAAAGTAGGCATAATTTTGTAATTTTTGTTAGGCTTGATTTTTATGAAGTGGAGCTTTTGTCTGTGTGTGTATTTAGTCTAGATCTTGTCTTGGCTCCCTTTTATTAGGCTGTTTTTTTTTTTCTTCTTTTTCTTTTATGCTCTTGTATTTTTTCAATTTTCTCAATGAGAGCTCTGTTCTCCATTGAGAAAAAATCGAATACTTGAGGCCAAATATGACAGTGATCTGACTATTACCTTCCATGAAGAATGTGCTTTTGTATAGGCTGTTTTTAACTTCATTTTATATATTGACCAGGTCCTTCTTGATTGTCCTGTAAATTTTAGAAGGTGTTGACATGTAATTGGTTTATTCAGACTATACACTATGTACTTTCCGGAGTGCCCAAATGGTTTTGATTAGGTTCAATGAAGAATTGTAATATATAGAGGAGAGGCATAGCTTTTCCTTGTAAGAGGCTGTTGCAATTACGTTTTAATTCTGTGATGCTTCACTTTGATTTGCAAGAACACTTGGATGCATTTTTGGTAATTTCTTTCAAGTAGTAGGTCTTGTTCAAACTTGTACGTTCAGTTTTTAATGTTTGAAGTTTACTTCAGGTGCTAATTTCAGGAAAAGAAGACCCTGAGGCACCCCTTTCCCCTGCTATGGATGCAGTTATAAGAGTCTTCAAACGTGTGTTCTTATTTTCTGAGAATGAAGACGAGGCTAAAACTTCATTTTGTTCAATTCGGCTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATAAAATCTATACAGGAGAGTACAGGAGCCTCTATAAGAGTATTATCAGGAGGTATGCGTTCATTTTCTGTTATGCACTTTCCATTCTCTTTTATTGATTGATTTTGAGCCTAGCTGTACTATTTTCAAAGATCATGAAATCTACCAGATAGCTAAGTTATAGAGTATCAGAAAGGCTGTTATTTAGGGAAAAAGGCAGATAAGTGCACCCTCCAAAACCTTTCTGCAAGAGAAGGATCATTCTAAAGTCTAATAATGCCACAAAAGATCCAAGGGAATCAATAGAAGACCCCCGTTATTGTGAGAAATGCAAATGGGTCTGATAAAAATCTGTCCAGCGTACTAAGCTTTGATTTTGGCAAGAGAACAATATCCTGAGCATTATTAACTTTAGTGTTTTTGATAAGATACACCATAACCCTTATTCCTAAACCCTTTTCATTTTAGTCCAATTTCGTATTGATCAGTTATTCGACTAGAGAAGTGATTCGGTTAGGAAGAATTGCTTGTTTTCACCCACAATTTTGGGATCAAATGTTTGGAAGAAGTGGAAATTTGGGATGTCTCATTGCAAGATTGCAACCTCAAAAGTTGTGCTGTGTAAGAGTTAAGAGTTTGATAGTGCATAGAGACAGGATACTGAAAGAGCAGTGCTCGGCCCCTTTCCATGTAAATAATTAGTCTCTTATTGAAAGAGCAGTGTCTCAATGACTAGATAGTAAGTCCTTGAAGAAAATATCAATAAGAATCACTAGCCTTAATAGGGATCACATTTTTACCTTTTACCATTGAGCTAAATGTACCTTCCCTTTTTTCCCTAAAGAAAAGCCTCTTCTTTAAAAGATACGCAGGTATATATCCACAGAAATTGATCTTATGTTTTCCATCTTGATATTTCCTACAAGACTCCAGAGCTCCATGGTCTCCCGAGTGCCTAGCTGCAAGCTAATTCTTGTTGCTCATTTCACATGGCAACGGTCACCTGTTACCATCGTGTAATCCTTTGGGGTTATTGAATGTGCACACACACTTGGTGACCTACAAGCCTTGTCTTGTTTTTTGAGTTCAATGATGTGTGGGGATGATGATTTGAACTTTTGACTTTTTGGTCGAGGTGATAATGCCTAAATCAGTTTAGTTATTGCCAGGTTGGCAGCAGTCTTGTCACCACACATGTGAACTTGATTGATATAGGTGGCATGCCCAACAAGTGTCATGCTGACTTAGCATATTACTGTCCACGTCGCACATGGTCAGTTAACCTTGTTGACATCACCATGAGACATCGGATTCACCCTTTGCTAGTGATTAAAAGGTGTGTGCTTATGCAGCAAAAGTGATATATATATATATATATATATATTTTTTTTGTTTAAAAATAAAGGAAAATATAGACCCCCATATTTAGTCAATCTCTTACAAATACTCTCATTCTCTTTCTAAAAATTTCGTACCCCCATCATTTGTGTACTATACTTTTTCATATGTTAAAAAAATGTTATTAATATATATTTTTTTTAATTTTGTATTCCACTGAAAAGGTTCTCCCTGGCTCAAAGGGCTTTAACATTTTTCTTATGCACGTTGTATATTCTTTCAGTTGCACTATGAAAGTTTGTATTTTTTAAAGAAGGATACTGTGTGTCATGCGATTTGAAAACAGTAGACTAGGCACGACATGAGCGTCCAAGCTTTGTCACTGGGCATTCACCTCAATAGTCCGAGAGCTAGGATATTAAATCAAATCTAAGAAGCTGAAAACAAACTGCAAAACACAATCATCCTCTATCAATCTTCCCCCTGTCTTCTACCATCCCCAATTTTGAGGGAGTAGGCTGGGGTGAACGAATACTTGCTTTTAACCACCTTATGCCAAAGGTATATGCAGGTATATACAGAAATCGATCTTATGTTTTCCATCTTGATATTTCCTACAAGACTCCTGAGCTCCATGGTCTTCTTATTAACCAAGTGCTACCTCACTATAGGCAATTTGGGTTAATAAAGATAACTAATTGGGATCTTAGCAGGTCCAGATTAAGTACTTCTTGACCCTTCAGAAAGTAGCCCCCTACCCCCCACCCAAATCTTTTGAATTTTCAGTGACCATATTAACCATTGAATTTTGGAATTCCAAGGACTGGGGTTTATCTTCAAATGAGATCTCCTAATACTTTTATGGTCCAAATAGCAATCAAGGTGTTGTCCAAGGTATGTTTCACATTGCTTGTCCCAACCTTAGAGCTTGTGTTCCATTTATTAGGCTTTTTTTTTTGGTAATTATTAGCTTAGTATTATTCTTTTGAATTGGAGCCTATTCTTGTCGGTTGTTGAGCTTGTTTTTTTTTTTTTTTATGGCCTATTATATTCTTTCATTTTTCTCAATGAAAGCTCGGTTTCTTGTATTGGAAAAAACTTCCAACTTGCATTAGGGATATTAAACAAGCAAACAAATAGACATCAGCTACAATAGTTCAAAGGTATTATGATTAGAAAATTATTTGCCTCAATCCCTTGGATGCAGCTTTGTTCTGGTGAGTTTTATCCCCATTTCTTCATCAAAGTTGCTGCCAAAAAAAATTTGAATCTAGAAATATGATTTCGTTGAGTTTTATTGCTGGACACAAAGGCTACAGGGAGACGATCGATGAGTTCCTTCTCCATCCACCTTTTCAAGAGAAAGGGAGGTTTTTGTGGCAAGCAGGAGTTTGTGTTGTGTTGTGAGGCTTATGGGGTGACAGGAATAATAGGATCTTTAGGGAAGTTGTGAGGGACCCCTTGTTAGGTTCTTTGTTTCTTTTTGGGCAAAAAGGCTTTGTGTAATTATTCTTGACGTTTTATTTACTTAATTGGAACCCGCTCTTTAGTTAGGTTTGGTTTTCATCTAAAGAGACCTCATTGCTAACTTTATTTTTTTAATGAATTTATATGCAAATGAGAATATAAACTGTCTCTTCAAAATTGGAGGATTTAGTATAGTTTCATTCTTGAATTTTGAGTTTTATCTGGTCATCTTAGAGAAGCATACTTATTGTGATTCACTAATGTCTTTCTCTTGCTCATACATGATAAAAACGACCTATAAAAGAAAAAGTACATGACAATAGCTAGATAACATAAGAATTATTTTTTTCCTTCAATTATATTGTTATAAAACAAAGTGACCAAGCATGATTACTATTAATGTCCCGAGATTATAATACATTCCCTCCTAGTGTTATTCATCCATGAGTACTCTCTGAACATTCCCATATTCATCTACATTTGATGCTTGCAGATGAGATGCCATTCTATGCTGGTGTAGACGAGAGAATGGTTGAATTGCAGGGAGAATCCTTGAAGGTTCTCAAGGCCCTAGAGGCAGTGGTGGGCCACTTAAGGAAGTTTTTAGTTGATCGTAGTGTTCTTCCTCTGTTTGAAAAGAGTGTAAGTTTTTTCTTGTTAGATCTGTGACCAACCTTTTTTTACCATATTTTAGGACTGGTAATGAATTGTTGCTACTTTTTTTTTTTTTTAGTTTAATACACCTCCCTCACAAGATCGCCAAATGGATGCCTGGGCGGACAAGTCATCACTTCTTACTGCATCTCAAAGTGTGATCTCTGCCGAGTATCCTTCATCTACAAAAAGAGAATCCCTATATCTTGACCGAGAAGCTTATCTTGATTCGTATATTCCATCCTCTGGTATTTCTCTATATGGGCAAGATCGAGTACTTCCTACAATTCGATCATCTGGTGTTGGTCGCTCTGGGGGACCTATTGTAACTCAGGTTGGTATATGTGGCTCATTTATCCAGTTATTGGTAGAAGGAAATGGTCTATGTTGACTTAGTGAGGTAGCAAACTTCCACACCTACTGACCTCCATAATCAAGAAGACCATTTGGTCATTGCATGTCCGTTATTACAATTAGGTGATTTGTTTATCATCTTCAGGTCCAGGCAAGCTAGAAGCTTCTCAGTTTACATGTCCATCTTGTCTTGGAAACACTAGGTTCAAAATATTTGGCATGTGCGTACAAGTATTATAGATTTTAGCATAACTGAATGGAGGCAGTGGGGACAGGATAGTTGCAGAGTCATGTCTTTGTAGTTTGTTATATCTGATTAAGTGACCTCCTTGTGGTTCCTGTCAGGTTACTCAGACAATGCAGATCCCGTTATCTTATGCTGAGGATATCATTGGGGTTGGAGGAACAAATATTGCATTCATCCGTCGCAATAGTGGTGCCATCTTAACCATACAAGAGAGCAGGGGATTACCTGACGAGATCACTGTGGAAATAAAAGGCACTTCAGCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAAGTTTCCTGTTCGGCTTATAATTTGGTGGTTTAAGAGCTTGTTTGTGGTCTATAGAGTTGTGATGGGGTACTCTGTTTCTCGCGTCTTGCAAAAAGCTACTTTTATCACATTTTGTAATTTCTCCTTGGCCAAAGCTTTAGCCTCACTAGAATAGACAGTTTTGGGTATCATTGGATCACTAGGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTATTTGTAACGTAGATCTAGTAGCTTTCAAATGCTCCATAGAACTCGTTGCTTTCAAAGTTCACCCATGCTTACCTTTGTTTAGTGGTGCATAAGTTTGTTGATGATTATTGTCAATTGAATTGAAGTCTAAAAATAAATTTGAAATTGAATTCAATGGAGATTTGTTATCTCAATGCAACATTTTCCACTACTTAAAAATTGGGAGCAGTTGTACCCTGTTCTTTCTGTGACGGTAGATATTTAAAAATAGCTGGAACGGATGCTTAAGCTGTCTTTTGTCTGTGTTTTAAAAACAAAACATTGAAAACTATAGATTTAATCGTTACCATCTACAAATGTCCCCTGGCTTTTATGTTAGGATGAGTCACAGTATATATAGGTCTACATATATATATATATATGTAGATATTTTGTAATTATCAGCGTAGCCTATTCTTTTGGATTGGGACCCATTTTTGTAAACGGGCGACAGGGGTTGCTTGGTTTTTGGATTTGTTTCTTGAATGCCTTTTTATATCCTTTCATCATTCTCAATGAAAGAAGGGAGGTTTCTTATAAAAAAAGGAAAATTCCTCTTTTAATTCTCTTCTATAGACGATTTTCATTACTTATTCAGCATCAAGTACATGTTTAAGATAGAAAAGGATTGTGATTCTCCCGCATCAAGAATATCCCAACTCAAATAGCTCTATGACTTATCTTTTGATGAGCAAAAATTAGGGTAATGTTTACTTATTTACGATTCTTTTTGGCTTATAGGAAGCAGTAAGTGCTCCCAAGGAACCAGTAACAAGCAGCAGCTATGGCAGGCTAGACACCTCAGGCATGAGGTCTTCTTACTCCCAGTTGGATGCTGCAGGTTCATCCTATACTTCATCCTCTTTATCTTCACAATTATATGGTGGATATGGATCTTCTGGGTTAGGAGGCTACAGTACCTTCAGGCTCTGAACTGATTGATCTGCAGATTCGTACCCACTCGGATTTTATCCGCCTCGGATTAATTCTTGTTAAGATAACGGATGAATTATTTTGGAACCTAGTCGTTGTAAAGTCAGCCTAAAGTAGTTAAAAGCGTTTTTATTACCCTCTCTGGCATATTGAATCTGATTCAGATGGGTAGATTTGTCTCGTGTTTTCTTTTTCAGTGTTAAATGTGTTTGTTTTTAGGTTTGTTTAATCAACCGCTTGAGGTCCTCAAATTTTCAGGACATCTTTTCCCAGTTATCTTGGAGAATTCAAATTATAACTTAAACACTGAAAAACTGGACTGCATCTTAGAGTTCTTAAGTTAATAGATTGGTATGGTCTTTTAATATCTG

mRNA sequence

TTAATAATTGATGAATAATAAATTAAAAAGATAAAAGTAATTTACATATAAATTAAAATTAATTAACGAATTTATTTCCTCTTTTCCCTTTCTCTTCCTTAATTTTATTAAAACCTCTGCAACTCTTAACCCTAACTCAATAGACTCTTCATCTTTCTCGATGGCCACCAACACAGCTACAGATAATGGCTCCACTGATGCCAACGCCCTCAATTTCAACCCCGAAAGCTCCCCACTTGCCTCTGTAGCTGCTGCAGAACCAGACTCTATGGAAGCCGGTGGCGCTGAATCCGACCTCGATCCCTCTAACCAAGACTACTTGTCTGCTCCGGCTTCGGATTCTGCAGACCATGATGAAAGCCCCAACCATACCGACGCTTCCGATAAAAAGTGGCCCGGATGGCCCGGAGACTGCGTGTTTCGGCTTATTGTACCGGTCGTTAAAGTTGGAAGCATTATTGGGCGCAAGGGCGATCTTATCAAGAAGATGTGCGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGTACTCCTGATCGTGTTGTGCTAATTTCAGGAAAAGAAGACCCTGAGGCACCCCTTTCCCCTGCTATGGATGCAGTTATAAGAGTCTTCAAACGTGTGTTCTTATTTTCTGAGAATGAAGACGAGGCTAAAACTTCATTTTGTTCAATTCGGCTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATAAAATCTATACAGGAGAGTACAGGAGCCTCTATAAGAGTATTATCAGGAGATGAGATGCCATTCTATGCTGGTGTAGACGAGAGAATGGTTGAATTGCAGGGAGAATCCTTGAAGGTTCTCAAGGCCCTAGAGGCAGTGGTGGGCCACTTAAGGAAGTTTTTAGTTGATCGTAGTGTTCTTCCTCTGTTTGAAAAGAGTTTTAATACACCTCCCTCACAAGATCGCCAAATGGATGCCTGGGCGGACAAGTCATCACTTCTTACTGCATCTCAAAGTGTGATCTCTGCCGAGTATCCTTCATCTACAAAAAGAGAATCCCTATATCTTGACCGAGAAGCTTATCTTGATTCGTATATTCCATCCTCTGGTATTTCTCTATATGGGCAAGATCGAGTACTTCCTACAATTCGATCATCTGGTGTTGGTCGCTCTGGGGGACCTATTGTAACTCAGGTTACTCAGACAATGCAGATCCCGTTATCTTATGCTGAGGATATCATTGGGGTTGGAGGAACAAATATTGCATTCATCCGTCGCAATAGTGGTGCCATCTTAACCATACAAGAGAGCAGGGGATTACCTGACGAGATCACTGTGGAAATAAAAGGCACTTCAGCACAAGTTCAGATGGCTCAACAATTAATTCAGGAAGCAGTAAGTGCTCCCAAGGAACCAGTAACAAGCAGCAGCTATGGCAGGCTAGACACCTCAGGCATGAGGTCTTCTTACTCCCAGTTGGATGCTGCAGGTTCATCCTATACTTCATCCTCTTTATCTTCACAATTATATGGTGGATATGGATCTTCTGGGTTAGGAGGCTACAGTACCTTCAGGCTCTGAACTGATTGATCTGCAGATTCGTACCCACTCGGATTTTATCCGCCTCGGATTAATTCTTGTTAAGATAACGGATGAATTATTTTGGAACCTAGTCGTTGTAAAGTCAGCCTAAAGTAGTTAAAAGCGTTTTTATTACCCTCTCTGGCATATTGAATCTGATTCAGATGGGTAGATTTGTCTCGTGTTTTCTTTTTCAGTGTTAAATGTGTTTGTTTTTAGGTTTGTTTAATCAACCGCTTGAGGTCCTCAAATTTTCAGGACATCTTTTCCCAGTTATCTTGGAGAATTCAAATTATAACTTAAACACTGAAAAACTGGACTGCATCTTAGAGTTCTTAAGTTAATAGATTGGTATGGTCTTTTAATATCTG

Coding sequence (CDS)

ATGGCCACCAACACAGCTACAGATAATGGCTCCACTGATGCCAACGCCCTCAATTTCAACCCCGAAAGCTCCCCACTTGCCTCTGTAGCTGCTGCAGAACCAGACTCTATGGAAGCCGGTGGCGCTGAATCCGACCTCGATCCCTCTAACCAAGACTACTTGTCTGCTCCGGCTTCGGATTCTGCAGACCATGATGAAAGCCCCAACCATACCGACGCTTCCGATAAAAAGTGGCCCGGATGGCCCGGAGACTGCGTGTTTCGGCTTATTGTACCGGTCGTTAAAGTTGGAAGCATTATTGGGCGCAAGGGCGATCTTATCAAGAAGATGTGCGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGTACTCCTGATCGTGTTGTGCTAATTTCAGGAAAAGAAGACCCTGAGGCACCCCTTTCCCCTGCTATGGATGCAGTTATAAGAGTCTTCAAACGTGTGTTCTTATTTTCTGAGAATGAAGACGAGGCTAAAACTTCATTTTGTTCAATTCGGCTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATAAAATCTATACAGGAGAGTACAGGAGCCTCTATAAGAGTATTATCAGGAGATGAGATGCCATTCTATGCTGGTGTAGACGAGAGAATGGTTGAATTGCAGGGAGAATCCTTGAAGGTTCTCAAGGCCCTAGAGGCAGTGGTGGGCCACTTAAGGAAGTTTTTAGTTGATCGTAGTGTTCTTCCTCTGTTTGAAAAGAGTTTTAATACACCTCCCTCACAAGATCGCCAAATGGATGCCTGGGCGGACAAGTCATCACTTCTTACTGCATCTCAAAGTGTGATCTCTGCCGAGTATCCTTCATCTACAAAAAGAGAATCCCTATATCTTGACCGAGAAGCTTATCTTGATTCGTATATTCCATCCTCTGGTATTTCTCTATATGGGCAAGATCGAGTACTTCCTACAATTCGATCATCTGGTGTTGGTCGCTCTGGGGGACCTATTGTAACTCAGGTTACTCAGACAATGCAGATCCCGTTATCTTATGCTGAGGATATCATTGGGGTTGGAGGAACAAATATTGCATTCATCCGTCGCAATAGTGGTGCCATCTTAACCATACAAGAGAGCAGGGGATTACCTGACGAGATCACTGTGGAAATAAAAGGCACTTCAGCACAAGTTCAGATGGCTCAACAATTAATTCAGGAAGCAGTAAGTGCTCCCAAGGAACCAGTAACAAGCAGCAGCTATGGCAGGCTAGACACCTCAGGCATGAGGTCTTCTTACTCCCAGTTGGATGCTGCAGGTTCATCCTATACTTCATCCTCTTTATCTTCACAATTATATGGTGGATATGGATCTTCTGGGTTAGGAGGCTACAGTACCTTCAGGCTCTGA

Protein sequence

MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEPVTSSSYGRLDTSGMRSSYSQLDAAGSSYTSSSLSSQLYGGYGSSGLGGYSTFRL

Homology

[Close]

BLAST of Carg23938 vs. NCBI nr
Match: XP_023546861.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 871.7 bits (2251), Expect = 1.1e-249
Identity = 466/474 (98.31%), Postives = 468/474 (98.73%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNTATDNGSTDAN LNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANVLNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAG DERMVELQGESLKVLKALEA
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEA 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLT+SQSVISAEYPSSTKRE
Sbjct: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTSSQSVISAEYPSSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED
Sbjct: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEAVSAPKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEP 420

Query: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRLDTSGMR  XXXXXXXX  YTSSSLSSQLYGGYGSSGLGGYSTFRL
Sbjct: 421 VTSSSYGRLDTSGMRSSXXXXXXXXSSYTSSSLSSQLYGGYGSSGLGGYSTFRL 474

[Close]

BLAST of Carg23938 vs. NCBI nr
Match: XP_022929700.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 869.4 bits (2245), Expect = 5.7e-249
Identity = 469/474 (98.95%), Postives = 472/474 (99.58%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAG DERMVELQGESLKVLKALEA
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEA 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVDRSVLPLFEKSFN PPSQDRQMDAWADKSSLLT+SQSVISAEYPSSTKRE
Sbjct: 241 VVGHLRKFLVDRSVLPLFEKSFNIPPSQDRQMDAWADKSSLLTSSQSVISAEYPSSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SLYLDREAYLDSYIPSSGISLYGQ+RVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED
Sbjct: 301 SLYLDREAYLDSYIPSSGISLYGQERVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEAVSAPKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEP 420

Query: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL
Sbjct: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 474

[Close]

BLAST of Carg23938 vs. NCBI nr
Match: XP_022996845.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 857.8 bits (2215), Expect = 1.7e-245
Identity = 464/474 (97.89%), Postives = 466/474 (98.31%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAG DERMVELQGESLKVLKALEA
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLKVLKALEA 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE
Sbjct: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED
Sbjct: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEAVSAPKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVSAPKEP 420

Query: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRL+ SGMRXXXXXXXXXXXX      SSQLYGGYGSSGLGGYSTFRL
Sbjct: 421 VTSSSYGRLEASGMRXXXXXXXXXXXXXXXXXXSSQLYGGYGSSGLGGYSTFRL 474

[Close]

BLAST of Carg23938 vs. NCBI nr
Match: XP_022965514.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 756.1 bits (1951), Expect = 7.0e-215
Identity = 403/474 (85.02%), Postives = 428/474 (90.30%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQ YLSAPASD
Sbjct: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQVYLSAPASD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SVPH-ESPNHAVASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+RVFKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERM+ELQGE+LKVLKALEA
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMLELQGETLKVLKALEA 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQD Q DAWADKSSLL+AS+SVIS EYP S+KRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDCQTDAWADKSSLLSASRSVISNEYPPSSKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SL++DRE +LDS+I SSGISLYG DRVLP IRSSGVGRSG PIVTQVTQTMQIPLSYAED
Sbjct: 301 SLFIDRETHLDSHISSSGISLYGPDRVLPAIRSSGVGRSGVPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEP 420
           IIGVGG NIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEA+S PKEP
Sbjct: 361 IIGVGGANIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAISGPKEP 420

Query: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VT+SSYGRLDT+G+R            YTSSSLSSQ YGGY SSGLGGYSTFRL
Sbjct: 421 VTTSSYGRLDTAGLRSSYSQLGASGSSYTSSSLSSQSYGGYVSSGLGGYSTFRL 470

[Close]

BLAST of Carg23938 vs. NCBI nr
Match: XP_023538336.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 729.9 bits (1883), Expect = 5.4e-207
Identity = 390/474 (82.28%), Postives = 413/474 (87.13%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATN  T+NGSTDA+ALN +P+   LA  AAAEPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNATTENGSTDADALNSSPQ---LACEAAAEPDSTEAGGAESDIDPSNQDYLSAPASD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
              H ESPNH  ASDKKWPGWPGDCVFR+IVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  YVPH-ESPNHAGASDKKWPGWPGDCVFRIIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVELQGE+LKVLKALEA
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLKVLKALEA 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQDRQ DAWADKSSLL+ASQSVIS EYP S+KRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTDAWADKSSLLSASQSVISNEYPPSSKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SL+ DRE +LDS+I SSGISLYG DRVLP IRSSGVGRSG PIVTQVTQTMQIPLSYAED
Sbjct: 301 SLFFDRETHLDSHISSSGISLYGPDRVLPAIRSSGVGRSGVPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEP 420
           IIGVGG NIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEA+S PKEP
Sbjct: 361 IIGVGGANIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAISGPKEP 420

Query: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRLDT+G+R            YT S                GYSTFRL
Sbjct: 421 VTSSSYGRLDTTGLRSSYSQLGASGSSYTPSXXXXXXXXXXXXXXXXGYSTFRL 470

[Close]

BLAST of Carg23938 vs. TAIR10
Match: AT4G26000.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 435.6 bits (1119), Expect = 3.8e-122
Identity = 242/427 (56.67%), Postives = 312/427 (73.07%), Query Frame = 0


Query: 54  LSAPASDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEE 113
           L+ P S +A     P+  D+++++WPGWPGDCVFR+IVPV KVG+IIGRKGD IKKMCEE
Sbjct: 43  LNQPDSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEE 102

Query: 114 TRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDE----AK 173
           TRARI+VLDG V TPDR+VLISGKE+PEA +SPAMDAV+RVF+RV    +N+D+    A 
Sbjct: 103 TRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAG 162

Query: 174 TSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQG 233
           + F S+RLLVASTQAINLIGKQGSLIKSI E++GAS+R+LS +E PFYA  DER+V+LQG
Sbjct: 163 SVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQG 222

Query: 234 ESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWAD-KSSLLTASQSV 293
           E+LK+LKALEA+VGHLR+FLVD +V+PLFEK +    SQ RQ +  A+ KSSL T S ++
Sbjct: 223 EALKILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNL 282

Query: 294 ISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVT 353
           +  ++    +RE L+L+R++ +DS +  SG+S+Y QD VL    S G+ R     VTQV+
Sbjct: 283 MEPDFSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVS 342

Query: 354 QTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQ 413
           QTMQIP SYAEDIIGV G NIA+IRR SGA +TI+ES   PD+ITVEIKGT++QVQ A+Q
Sbjct: 343 QTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQ 402

Query: 414 LIQEAVSAPKEPVT-SSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQ--LYGGYGSSG 473
           LIQE +   KEPV+ S  Y R+D+  +               S+ + ++   Y     S 
Sbjct: 403 LIQEFIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRPTAYSQ 462

[Close]

BLAST of Carg23938 vs. TAIR10
Match: AT3G04610.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-74
Identity = 159/366 (43.44%), Postives = 217/366 (59.29%), Query Frame = 0


Query: 75  DKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLI 134
           +K+WPGWPG+ VFR++VP  KVGSIIGRKGD+IKK+ EETRARI++LDG  GT +R V++
Sbjct: 177 EKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMV 236

Query: 135 SGKEDPEAPLSPAMDAVIRVFKRVF--LFSENEDEAKTSFCSIRLLVASTQAINLIGKQG 194
           SGKE+PE+ L P+MD ++RV  R+   L  E       S  S RLLV ++QA +LIGKQG
Sbjct: 237 SGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQG 296

Query: 195 SLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDR 254
             +K+IQE++   +RVL  +++P +A  D+R+VE+ GE   V +ALE +  HLRKFLVDR
Sbjct: 297 GTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDR 356

Query: 255 SVLPLFEKSFNTPPSQDRQM----DAWADKSS-------LLTASQSVISAEYPSSTKRES 314
           S++P FE     P  Q   M     +W                                 
Sbjct: 357 SIIPFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGXXXXXXXXXXXXXXXXXXXXXX 416

Query: 315 LYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDI 374
                        P  GIS YG++  +    +  V  +   +  QVTQ MQIPLSYA+ +
Sbjct: 417 XXXXXXXXXXEKQPHQGISAYGREPPM----NVHVSSAPPMVAQQVTQQMQIPLSYADAV 476

Query: 375 IGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVS-----A 423
           IG  G+NI++ RR SGA +TIQE+RG+P E+TVE+ GT +QVQ A QLIQ  ++     A
Sbjct: 477 IGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAPA 536

[Close]

BLAST of Carg23938 vs. TAIR10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-22
Identity = 61/174 (35.06%), Postives = 98/174 (56.32%), Query Frame = 0


Query: 84  DCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDP--- 143
           D VFR + PV K+GS+IGR GD++K++  +TR++IR+ +   G  +RV+ I    D    
Sbjct: 49  DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNA 108

Query: 144 ----EAPLSPAMDAVIRVFKRVF---LFSENEDEAKTSFCSIRLLVASTQAINLIGKQGS 203
               E  LSPA DA+ R+  RV      SE+  E +    + +LLV S Q   ++G+ G 
Sbjct: 109 FGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQ-VTAKLLVPSDQIGCILGRGGQ 168

Query: 204 LIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRK 248
           ++++I+  TGA IR++    MP  A   + ++++ GE L V KAL  +   L +
Sbjct: 169 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221

[Close]

BLAST of Carg23938 vs. TAIR10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-22
Identity = 91/345 (26.38%), Postives = 149/345 (43.19%), Query Frame = 0


Query: 84  DCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAP 143
           +  FRL+ P  KVGS+IG+ G +++ +  E+ A I+V D    + +R+++IS +E+ E  
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334

Query: 144 LSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTG 203
            S A D V+RV  R+         A  +    RLLV S     L+GK G LI  ++ +TG
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFEPSAAVVA----RLLVHSPYIGRLLGKGGHLISEMRRATG 394

Query: 204 ASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFN 263
           ASIRV + D+   Y    + +V++ G    V  AL  ++  LR+ +     LP F+    
Sbjct: 395 ASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFP-GRLP-FQGMGG 454

Query: 264 TPP------------SQDRQMDAWADKSSLLTASQSVISAEYPSSTKRESLYLDREAYLD 323
            PP                      D+               P   +             
Sbjct: 455 PPPXXXXXXXXXXXXXXXXXXXXXXDRYHSPVGPFHERHCHGPGFDRPPXXXXXXXXXXX 514

Query: 324 SYIPSSGISLYGQDRVLP------TIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVG 383
            + P  GI  +    V P       +R+  +G S  P++T     + IP +Y   + G  
Sbjct: 515 XWTPQPGIDGHPGGMVPPDVNHGFALRNEPIG-SENPVMTSANVEIVIPQAYLGHVYGEN 574

Query: 384 GTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLI 411
            +N+ +I++ SGA + + + +    E  V + GTS Q   AQ L+
Sbjct: 575 CSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLL 612

[Close]

BLAST of Carg23938 vs. TAIR10
Match: AT5G53060.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-19
Identity = 104/411 (25.30%), Postives = 191/411 (46.47%), Query Frame = 0


Query: 18  NFNPES-SPLASVAAAEPDSM-EAGGAESDLDPSNQDYLSAPASDSADHDESPNHTDASD 77
           NF   S SP  S AAA  D M +     SD  P      +  +S  +++ E        +
Sbjct: 259 NFQGRSHSPERSFAAAGDDYMPQLRRQSSDRFPRGNFRNNNFSSRQSNYAEEAPAVPVGE 318

Query: 78  KKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLIS 137
                +  + VF+++ P  K+  ++G    +I  +  E    +RV D   G+ ++++ IS
Sbjct: 319 NV---YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITIS 378

Query: 138 GKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLI 197
            +E P+ P  PA +A++ +  ++     ++D   T+    RLLV S  +I L GK GS +
Sbjct: 379 SEEAPDDPFFPAQEALLHIQTQIIDLIPDKDNLITT----RLLVPSRDSICLEGKAGS-V 438

Query: 198 KSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDRSVL 257
             I   TG S+++L+ +E+P  A +++ ++++ GE   +  A EA+V  L   L      
Sbjct: 439 SEISRLTGTSVQILAREEIPRCASINDVVIQITGE---IRAAREALV-ELTLLLRSHMFK 498

Query: 258 PLFEKSFNTPP---SQDRQMDAWADKSSLLTASQSVISAEYPSST----KRESLYLDREA 317
            L +K   TPP   S    ++  A    + +++ ++ S E P+S+    ++ S  L +  
Sbjct: 499 ELSQK--ETPPASTSTTGPLEGVAGVMEVASSNNTIQSREGPTSSNLNLQQVSTILPQFK 558

Query: 318 YLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTN 377
                +  +G S + ++  + T       R   P+VT+ T  + +P +    ++      
Sbjct: 559 EGFGSVAKAGESEHREEVPVTT------SRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNK 618

Query: 378 IAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKE 420
           +A I   SGA +TI E R    +  + I GT  Q + AQ L+Q  + + +E
Sbjct: 619 LAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILSIQE 649

[Close]

BLAST of Carg23938 vs. Swiss-Prot
Match: sp|Q9SZH4|PEP_ARATH (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 6.8e-121
Identity = 242/427 (56.67%), Postives = 312/427 (73.07%), Query Frame = 0


Query: 54  LSAPASDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEE 113
           L+ P S +A     P+  D+++++WPGWPGDCVFR+IVPV KVG+IIGRKGD IKKMCEE
Sbjct: 43  LNQPDSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEE 102

Query: 114 TRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDE----AK 173
           TRARI+VLDG V TPDR+VLISGKE+PEA +SPAMDAV+RVF+RV    +N+D+    A 
Sbjct: 103 TRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAG 162

Query: 174 TSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQG 233
           + F S+RLLVASTQAINLIGKQGSLIKSI E++GAS+R+LS +E PFYA  DER+V+LQG
Sbjct: 163 SVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQG 222

Query: 234 ESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWAD-KSSLLTASQSV 293
           E+LK+LKALEA+VGHLR+FLVD +V+PLFEK +    SQ RQ +  A+ KSSL T S ++
Sbjct: 223 EALKILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKSSLHTISSNL 282

Query: 294 ISAEYPSSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVT 353
           +  ++    +RE L+L+R++ +DS +  SG+S+Y QD VL    S G+ R     VTQV+
Sbjct: 283 MEPDFSLLARREPLFLERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVS 342

Query: 354 QTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQ 413
           QTMQIP SYAEDIIGV G NIA+IRR SGA +TI+ES   PD+ITVEIKGT++QVQ A+Q
Sbjct: 343 QTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQ 402

Query: 414 LIQEAVSAPKEPVT-SSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQ--LYGGYGSSG 473
           LIQE +   KEPV+ S  Y R+D+  +               S+ + ++   Y     S 
Sbjct: 403 LIQEFIINHKEPVSVSGGYARIDSGYVPAYPPQLSNRQEPLPSTYMGTEPVQYRPTAYSQ 462

[Close]

BLAST of Carg23938 vs. Swiss-Prot
Match: sp|Q9SR13|FLK_ARATH (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.8e-73
Identity = 159/366 (43.44%), Postives = 217/366 (59.29%), Query Frame = 0


Query: 75  DKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLI 134
           +K+WPGWPG+ VFR++VP  KVGSIIGRKGD+IKK+ EETRARI++LDG  GT +R V++
Sbjct: 177 EKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMV 236

Query: 135 SGKEDPEAPLSPAMDAVIRVFKRVF--LFSENEDEAKTSFCSIRLLVASTQAINLIGKQG 194
           SGKE+PE+ L P+MD ++RV  R+   L  E       S  S RLLV ++QA +LIGKQG
Sbjct: 237 SGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQG 296

Query: 195 SLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDR 254
             +K+IQE++   +RVL  +++P +A  D+R+VE+ GE   V +ALE +  HLRKFLVDR
Sbjct: 297 GTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDR 356

Query: 255 SVLPLFEKSFNTPPSQDRQM----DAWADKSS-------LLTASQSVISAEYPSSTKRES 314
           S++P FE     P  Q   M     +W                                 
Sbjct: 357 SIIPFFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGXXXXXXXXXXXXXXXXXXXXXX 416

Query: 315 LYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDI 374
                        P  GIS YG++  +    +  V  +   +  QVTQ MQIPLSYA+ +
Sbjct: 417 XXXXXXXXXXEKQPHQGISAYGREPPM----NVHVSSAPPMVAQQVTQQMQIPLSYADAV 476

Query: 375 IGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVS-----A 423
           IG  G+NI++ RR SGA +TIQE+RG+P E+TVE+ GT +QVQ A QLIQ  ++     A
Sbjct: 477 IGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFMAEAGAPA 536

[Close]

BLAST of Carg23938 vs. Swiss-Prot
Match: sp|P57721|PCBP3_HUMAN (Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-18
Identity = 94/336 (27.98%), Postives = 155/336 (46.13%), Query Frame = 0


Query: 88  RLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPA 147
           RL++   +VGSIIG+KG+ +KKM EE+ ARI + +G    P+R+V I+G   P   +  A
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 108

Query: 148 MDAVIRVFKRVFLFS-ENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASI 207
              +   F+   + S  N         ++RL+V ++Q  +LIGK GS IK I+ESTGA +
Sbjct: 109 FAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 168

Query: 208 RVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPP 267
           +V +GD +P      ER V + G    +++ ++ +   + +     + +P   K  +TP 
Sbjct: 169 QV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV 228

Query: 268 SQDRQMDAWADKSSLLTASQSVISAEYPSS-TKRESLYLDREAY-----LDSYIPSSGIS 327
                   +A   +     Q  I   +P   TK   L + +  +      +   P   + 
Sbjct: 229 -------IFAGGQAYTIQGQYAI--PHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLP 288

Query: 328 LYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAIL 387
           L+  +     +     G    P  +  T  + IP      IIG  GT I  IR+ SGA +
Sbjct: 289 LHSSEEA-QNLMGQSSGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 348

Query: 388 TIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSA 417
            I  +     E  + I GT A + +AQ LI   +++
Sbjct: 349 KIANATEGSSERQITITGTPANISLAQYLINARLTS 363

[Close]

BLAST of Carg23938 vs. Swiss-Prot
Match: sp|P57722|PCBP3_MOUSE (Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-18
Identity = 94/336 (27.98%), Postives = 155/336 (46.13%), Query Frame = 0


Query: 88  RLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEDPEAPLSPA 147
           RL++   +VGSIIG+KG+ +KKM EE+ ARI + +G    P+R+V I+G   P   +  A
Sbjct: 49  RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTITG---PTDAIFKA 108

Query: 148 MDAVIRVFKRVFLFS-ENEDEAKTSFCSIRLLVASTQAINLIGKQGSLIKSIQESTGASI 207
              +   F+   + S  N         ++RL+V ++Q  +LIGK GS IK I+ESTGA +
Sbjct: 109 FAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 168

Query: 208 RVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDRSVLPLFEKSFNTPP 267
           +V +GD +P      ER V + G    +++ ++ +   + +     + +P   K  +TP 
Sbjct: 169 QV-AGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPV 228

Query: 268 SQDRQMDAWADKSSLLTASQSVISAEYPSS-TKRESLYLDREAY-----LDSYIPSSGIS 327
                   +A   +     Q  I   +P   TK   L + +  +      +   P   + 
Sbjct: 229 -------IFAGGQAYTIQGQYAI--PHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLP 288

Query: 328 LYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAIL 387
           L+  +     +     G    P  +  T  + IP      IIG  GT I  IR+ SGA +
Sbjct: 289 LHSSEEA-QNLMGQSSGLDASPPAS--THELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 348

Query: 388 TIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSA 417
            I  +     E  + I GT A + +AQ LI   +++
Sbjct: 349 KIANATEGSSERQITITGTPANISLAQYLINARLTS 363

[Close]

BLAST of Carg23938 vs. Swiss-Prot
Match: sp|Q8W4B1|RCF3_ARATH (RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN=RCF3 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-18
Identity = 104/411 (25.30%), Postives = 191/411 (46.47%), Query Frame = 0


Query: 18  NFNPES-SPLASVAAAEPDSM-EAGGAESDLDPSNQDYLSAPASDSADHDESPNHTDASD 77
           NF   S SP  S AAA  D M +     SD  P      +  +S  +++ E        +
Sbjct: 259 NFQGRSHSPERSFAAAGDDYMPQLRRQSSDRFPRGNFRNNNFSSRQSNYAEEAPAVPVGE 318

Query: 78  KKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLIS 137
                +  + VF+++ P  K+  ++G    +I  +  E    +RV D   G+ ++++ IS
Sbjct: 319 NV---YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITIS 378

Query: 138 GKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVASTQAINLIGKQGSLI 197
            +E P+ P  PA +A++ +  ++     ++D   T+    RLLV S  +I L GK GS +
Sbjct: 379 SEEAPDDPFFPAQEALLHIQTQIIDLIPDKDNLITT----RLLVPSRDSICLEGKAGS-V 438

Query: 198 KSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLRKFLVDRSVL 257
             I   TG S+++L+ +E+P  A +++ ++++ GE   +  A EA+V  L   L      
Sbjct: 439 SEISRLTGTSVQILAREEIPRCASINDVVIQITGE---IRAAREALV-ELTLLLRSHMFK 498

Query: 258 PLFEKSFNTPP---SQDRQMDAWADKSSLLTASQSVISAEYPSST----KRESLYLDREA 317
            L +K   TPP   S    ++  A    + +++ ++ S E P+S+    ++ S  L +  
Sbjct: 499 ELSQK--ETPPASTSTTGPLEGVAGVMEVASSNNTIQSREGPTSSNLNLQQVSTILPQFK 558

Query: 318 YLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTN 377
                +  +G S + ++  + T       R   P+VT+ T  + +P +    ++      
Sbjct: 559 EGFGSVAKAGESEHREEVPVTT------SRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNK 618

Query: 378 IAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKE 420
           +A I   SGA +TI E R    +  + I GT  Q + AQ L+Q  + + +E
Sbjct: 619 LAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILSIQE 649

[Close]

BLAST of Carg23938 vs. TrEMBL
Match: tr|A0A0A0LMH4|A0A0A0LMH4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 4.5e-202
Identity = 388/474 (81.86%), Postives = 406/474 (85.65%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNT T+NGSTDA     NP SS L S+AAAEPDS EAG  +S   PSNQDY S P SD
Sbjct: 1   MATNTTTENGSTDAIP---NPLSSTLPSLAAAEPDSTEAGDDDSXXXPSNQDYSSVPPSD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SA H+ S NHT  SDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SAAHEPS-NHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+ E+PLSPAMDAVIRVFKRV   SENEDEAK SFCSIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVELQGESLKVLKALE 
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEG 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQDRQ + WADKSSLLTASQS+ISAEY  STKRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYAPSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360
           SL+LDREA+ DS+I SSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED
Sbjct: 301 SLFLDREAHFDSHISSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAED 360

Query: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEP 420
           IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEAV+APKEP
Sbjct: 361 IIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNAPKEP 420

Query: 421 VTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           VTSSSYGRLDT+G+R            +                  GGY+TFRL
Sbjct: 421 VTSSSYGRLDTTGLRSSYSQLAASGSSFXXXXXXXXXXXXXXXXXXGGYTTFRL 470

[Close]

BLAST of Carg23938 vs. TrEMBL
Match: tr|A0A1S4E0X0|A0A1S4E0X0_CUCME (RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo OX=3656 GN=LOC103492560 PE=4 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 2.8e-196
Identity = 382/478 (79.92%), Postives = 404/478 (84.52%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60
           MATNT TDNGSTDA A   NP+SS L S+AAAE DS E G  +SD+DPSNQDY S P SD
Sbjct: 1   MATNTTTDNGSTDAIA---NPQSSTLPSLAAAEADSTEVGDDDSDIDPSNQDYSSLPPSD 60

Query: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120
           SA H+ S +HT ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV
Sbjct: 61  SAAHEPS-SHTGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180
           LDGAVGTPDRVVLISGKE+ ++PLSPAMDAVIRVFKRV   SENEDEAK SF SIRLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEELDSPLSPAMDAVIRVFKRVSGLSENEDEAKASFSSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 240
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVELQGESLKVLKALE 
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEG 240

Query: 241 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 300
           VVGHLRKFLVD SVLPLFEKSFNTP SQDRQ + WADKSSLLTASQS+ISAEYP STKRE
Sbjct: 241 VVGHLRKFLVDHSVLPLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAEYPPSTKRE 300

Query: 301 SLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRS----GGPIVTQVTQTMQIPLS 360
           SL+LDRE +LDS+I SSGISLYGQDRVLPTIRSSGVGRS       ++  VTQTMQIPLS
Sbjct: 301 SLFLDRETHLDSHISSSGISLYGQDRVLPTIRSSGVGRSXXXXXXXLIYSVTQTMQIPLS 360

Query: 361 YAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSA 420
           YAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTS+QVQMAQQLIQEAV+A
Sbjct: 361 YAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSSQVQMAQQLIQEAVNA 420

Query: 421 PKEPVTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           PKEPVTSSSYGRLDT+G+R           X                    GY+TFRL
Sbjct: 421 PKEPVTSSSYGRLDTTGLRSSYSQLAASGSXXXXXXXXXXXXXXXXXXXXXGYTTFRL 474

[Close]

BLAST of Carg23938 vs. TrEMBL
Match: tr|W9SIR6|W9SIR6_9ROSA (Poly(RC)-binding protein 3 OS=Morus notabilis OX=981085 GN=L484_005636 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 2.8e-156
Identity = 319/480 (66.46%), Postives = 366/480 (76.25%), Query Frame = 0


Query: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPA-- 60
           MATN  T NG T A   +  P   P  + AAA   + +A   E      N++  S PA  
Sbjct: 1   MATNEPTANGVTKAPKSDSQP--IPSDATAAASTANEKAPVTEPGHATGNRNMESEPAPX 60

Query: 61  ----SDSADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEET 120
                  A +  +   TDA DKKW GWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEET
Sbjct: 61  XXXXXXPASNAGTTATTDA-DKKWLGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEET 120

Query: 121 RARIRVLDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCS 180
           RARIRVLDGAVGTPDR+VLISGKE+PEA LSPAMDAVIRVFKRV   SENE  A  +FCS
Sbjct: 121 RARIRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRVFKRVSGLSENE-AAGVAFCS 180

Query: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKV 240
           IRLLVASTQAINLIGKQGSLIKSIQESTGAS+RVL+GDE+PFYA  DER+VELQGE LKV
Sbjct: 181 IRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLTGDEVPFYAAADERIVELQGEGLKV 240

Query: 241 LKALEAVVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYP 300
           LKALEAV+GHLRKFLVD SV+PLFEKS+N+  SQ+RQ+D WADKS L  ++Q+ +   YP
Sbjct: 241 LKALEAVIGHLRKFLVDHSVIPLFEKSYNSTISQERQVDTWADKSMLQASTQTGVGTNYP 300

Query: 301 SSTKRESLYLDREAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIP 360
            + KRE  +L+RE  L+  +PSSGIS+YGQD  LP IR +G GR+G PIVTQ+ QTMQIP
Sbjct: 301 ITAKREPYFLERETQLEPQLPSSGISMYGQDTSLPGIRPTGFGRAGAPIVTQIAQTMQIP 360

Query: 361 LSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAV 420
           LSYAEDIIG+ G+NIA+IRR SGAILT+QESRGLPDEITVEIKGTS+QVQ+AQQLIQE +
Sbjct: 361 LSYAEDIIGIEGSNIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQLAQQLIQEVI 420

Query: 421 SAPKEPVTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLYGGYGSSGLGGYSTFRL 475
           +  KEPV  SSYGR+DT+ +R             TS    S   GGYGSSGLGGYSTFRL
Sbjct: 421 NNHKEPV-PSSYGRIDTA-LRSNYSQLSSSYPPTTSLPPRSYSGGGYGSSGLGGYSTFRL 474

[Close]

BLAST of Carg23938 vs. TrEMBL
Match: tr|M5XYS8|M5XYS8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G074800 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 4.9e-156
Identity = 310/444 (69.82%), Postives = 350/444 (78.83%), Query Frame = 0


Query: 67  SPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVG 126
           S + T  +DK+WPGWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEETRARIRVLDGAVG
Sbjct: 73  SGDATSIADKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVG 132

Query: 127 TPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTS------FCSIRLLVA 186
           TPDR+VLISG+E+PEAPLSPAMDAVIR+FKR+   +++E +AK S      FCSIRLLVA
Sbjct: 133 TPDRIVLISGREEPEAPLSPAMDAVIRIFKRISGLADSEGDAKVSGPAGVAFCSIRLLVA 192

Query: 187 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEA 246
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDE+PFYA  +ER+VELQGE+LKVLKA+EA
Sbjct: 193 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAAEERIVELQGEALKVLKAVEA 252

Query: 247 VVGHLRKFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRE 306
           VV HLRKFLVD SVLPLFEK++N   SQ+RQ D WADKS L TASQ+ +S  Y  S KRE
Sbjct: 253 VVAHLRKFLVDHSVLPLFEKTYNATISQERQPDTWADKSLLHTASQTGVSTNYSLSAKRE 312

Query: 307 SLYLDREAYLDSYIPSSGISLYG----------------------------QDRVLPTIR 366
           SL+LDRE  L+S +PS+GISLYG                                  +IR
Sbjct: 313 SLFLDRETQLESQLPSAGISLYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIR 372

Query: 367 SSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEI 426
           SSG+GR G PIVTQ+ QTMQIPLSYAEDIIGV G+NIAFIRR+SGAILT+QESRGLPDEI
Sbjct: 373 SSGIGRPGAPIVTQIAQTMQIPLSYAEDIIGVEGSNIAFIRRSSGAILTVQESRGLPDEI 432

Query: 427 TVEIKGTSAQVQMAQQLIQEAVSAPKEPVTSSSYGRLDTSGMRXXXXXXXXXXXXYTSSS 475
           TVEIKGTS+QVQMAQQLIQE +++ KEPVT SSYGR+DT GMR            Y SSS
Sbjct: 433 TVEIKGTSSQVQMAQQLIQEVINSRKEPVT-SSYGRIDT-GMR--SSYSQLGASSYPSSS 492

[Close]

BLAST of Carg23938 vs. TrEMBL
Match: tr|F6GXK2|F6GXK2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0052g00030 PE=4 SV=1)

HSP 1 Score: 555.4 bits (1430), Expect = 1.2e-154
Identity = 300/409 (73.35%), Postives = 340/409 (83.13%), Query Frame = 0


Query: 73  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVV 132
           AS+KKWPGWPGDCVFRLIVPV+KVGSIIGRKG+LIKKMCEETRARIRVLDGAVGT DR+V
Sbjct: 66  ASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIV 125

Query: 133 LISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAK------TSFCSIRLLVASTQAIN 192
           LISG+E+PEAPLSPAMDAVIRVFKRV   SE+E + K       +FCSIRLLVASTQAIN
Sbjct: 126 LISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAIN 185

Query: 193 LIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGVDERMVELQGESLKVLKALEAVVGHLR 252
           LIGKQGSLIKSIQESTGAS+RVLSGDE+PFYA  DER+VELQGE+LKV KALEAVVGHLR
Sbjct: 186 LIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLR 245

Query: 253 KFLVDRSVLPLFEKSFNTPPSQDRQMDAWADKSSLLTASQSVISAEYPSSTKRESLYLDR 312
           KFLVD SVLPLFE+++N   SQDRQ D WADKS L   SQ+ + ++Y    KRESLYLDR
Sbjct: 246 KFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYSLPAKRESLYLDR 305

Query: 313 EAYLDSYIPSSGISLYGQDRVLPTIRSSGVGRSGGPIVTQVTQTMQIPLSYAEDIIGVGG 372
           E  ++     SG+ +YGQ+  L  IRSSG+GR+G PIVTQ+ QTMQIPLSYAEDIIG+GG
Sbjct: 306 ETQME----HSGLPMYGQEHGLSGIRSSGLGRAGAPIVTQIAQTMQIPLSYAEDIIGIGG 365

Query: 373 TNIAFIRRNSGAILTIQESRGLPDEITVEIKGTSAQVQMAQQLIQEAVSAPKEPVTSSSY 432
            NIA+IRR SGAILT+QESRGLPDEITVEIKGTS+QVQ AQQLIQE +S  KEPV  SSY
Sbjct: 366 ANIAYIRRTSGAILTVQESRGLPDEITVEIKGTSSQVQTAQQLIQEFISNHKEPV-PSSY 425

Query: 433 GRLDTSGMRXXXXXXXXXXXXYTSSSLSSQLY-GGYGSSGLGGYSTFRL 475
           G++D SG+R            Y+SSSLSSQ Y GGYGSSG+GGYS++RL
Sbjct: 426 GKMD-SGLR--SSYSQLGNTSYSSSSLSSQPYGGGYGSSGVGGYSSYRL 466

The following BLAST results are available for this feature:

BLAST of Carg23938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546861.1	1.1e-249	98.31	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo...	[more]
XP_022929700.1	5.7e-249	98.95	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]
XP_022996845.1	1.7e-245	97.89	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]
XP_022965514.1	7.0e-215	85.02	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]
XP_023538336.1	5.4e-207	82.28	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of Carg23938 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26000.1	3.8e-122	56.67	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	1.0e-74	43.44	RNA-binding KH domain-containing protein	[more]
AT5G15270.2	2.6e-22	35.06	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	7.6e-22	26.38	RNA-binding KH domain-containing protein	[more]
AT5G53060.1	1.2e-19	25.30	RNA-binding KH domain-containing protein	[more]

BLAST of Carg23938 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZH4\|PEP_ARATH	6.8e-121	56.67	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9SR13\|FLK_ARATH	1.8e-73	43.44	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
sp\|P57721\|PCBP3_HUMAN	1.3e-18	27.98	Poly(rC)-binding protein 3 OS=Homo sapiens OX=9606 GN=PCBP3 PE=2 SV=2	[more]
sp\|P57722\|PCBP3_MOUSE	1.3e-18	27.98	Poly(rC)-binding protein 3 OS=Mus musculus OX=10090 GN=Pcbp3 PE=1 SV=3	[more]
sp\|Q8W4B1\|RCF3_ARATH	2.2e-18	25.30	RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg23938 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMH4\|A0A0A0LMH4_CUCSA	4.5e-202	81.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1	[more]
tr\|A0A1S4E0X0\|A0A1S4E0X0_CUCME	2.8e-196	79.92	RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|W9SIR6\|W9SIR6_9ROSA	2.8e-156	66.46	Poly(RC)-binding protein 3 OS=Morus notabilis OX=981085 GN=L484_005636 PE=4 SV=1	[more]
tr\|M5XYS8\|M5XYS8_PRUPE	4.9e-156	69.82	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G074800 PE=4 SV=1	[more]
tr\|F6GXK2\|F6GXK2_VITVI	1.2e-154	73.35	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0052g00030 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23938-RA	Carg23938-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 83..156 e-value: 1.5E-9 score: 47.8 coord: 171..246 e-value: 3.2E-10 score: 50.0 coord: 345..415 e-value: 4.2E-11 score: 52.9
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 348..412 e-value: 1.3E-11 score: 44.0 coord: 87..139 e-value: 4.6E-11 score: 42.3 coord: 175..241 e-value: 6.6E-11 score: 41.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 342..421 e-value: 6.4E-15 score: 56.5
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 84..154 e-value: 2.1E-14 score: 54.8
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 172..249 e-value: 1.1E-14 score: 55.7
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 77..139
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 342..415
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 168..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 56..474
None	No IPR available	PANTHER	PTHR10288:SF132	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER	coord: 56..474
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 172..241 score: 13.795
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 84..151 score: 13.879
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 346..410 score: 14.278
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 174..242 e-value: 4.16459E-17 score: 74.8203
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 86..155 e-value: 2.42578E-19 score: 81.3687
None	No IPR available	CDD	cd00105	KH-I	coord: 348..411 e-value: 2.50657E-11 score: 58.7255

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23938	Cla022779	Watermelon (97103) v1	carwmB0616
Carg23938	Csa2G061550	Cucumber (Chinese Long) v2	carcuB0643
Carg23938	MELO3C003974	Melon (DHL92) v3.5.1	carmeB0619
Carg23938	ClCG11G011750	Watermelon (Charleston Gray)	carwcgB0601
Carg23938	CSPI02G06420	Wild cucumber (PI 183967)	carcpiB0650
Carg23938	Cucsa.089000	Cucumber (Gy14) v1	carcgyB0692
Carg23938	CmaCh05G007150	Cucurbita maxima (Rimu)	carcmaB0872
Carg23938	CmaCh12G009130	Cucurbita maxima (Rimu)	carcmaB0870
Carg23938	CmoCh05G007520	Cucurbita moschata (Rifu)	carcmoB0849
Carg23938	CmoCh12G009180	Cucurbita moschata (Rifu)	carcmoB0847
Carg23938	Lsi11G007930	Bottle gourd (USVL1VR-Ls)	carlsiB563
Carg23938	Cp4.1LG11g06100	Cucurbita pepo (Zucchini)	carcpeB0879
Carg23938	Cp4.1LG07g07550	Cucurbita pepo (Zucchini)	carcpeB0880
Carg23938	CsGy2G006570	Cucumber (Gy14) v2	carcgybB0616
Carg23938	MELO3C003974.2	Melon (DHL92) v3.6.1	carmedB0626
Carg23938	CsaV3_2G008740	Cucumber (Chinese Long) v3	carcucB0651
Carg23938	Cla97C11G217730	Watermelon (97103) v2	carwmbB0644
Carg23938	Bhi06G001068	Wax gourd	carwgoB0735

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23938	Carg24193	Silver-seed gourd	carcarB547

The following block(s) are covering this gene:

None