Carg24193 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24193
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding KH domain-containing protein PEPPER
Location	Cucurbita_argyrosperma_scaffold_225 : 115817 .. 120848 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAATTTTATTATTTCAATAATTTACAAAAATAAAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAACCTGCATTTCCTTACTTTCTTCCTCTCTTCCTTCGTCCTCTTTAAACCTCTGAAAATCTTAACCCTAACTTCTTCCTCCTTCTTCATCCTTCTTCATCTTCCTCCATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGAGTGTTTTTTTTTATTTTTAATTAATTAATTTATTTAGCAATGGAAATGGCTTTGTTACTCATGGTTACGTAGGGATGACGAGTTGAATCTCTATCTTTATATTGGTTTAAACTGGATTAAATGATTCATAGTCTAAAAATATCTCCATTTTCGTGCCCTCAGGTTTCCAGAAAACCAAGGCCGTTCTTCCATCTTTGGCTGGTTCCATCAAATACTAGTTAGTCATAAAAACTATTTCCCACTTCTTTCACAGCTGCCGTCCGATAATAGGTCAAGTAGTTGTATAAATGGAGCTTCTTGTGGTCGAAAGGAACATATATTATAGAATTGAGGTCTGTTCCATGGTGGCGCAATGCTCTTATCACTTAGAACTAGAGTTAGATTTGGGAGGCAAAAGGGTTTTTTTTTTTTACTATATAATTATTTGTTAGGCTTAGTTATTATGGAGTTTTTTCCCCAAATAGTTTAGGTTTTATTTGAGCTCTTTTTGTGGGTTCTTTTTCTTTGCATGCCCTTGTATTTTCTTTAAAATTTTCAAGGAAACCCCGGTTTTCAATTGAAAAAAAACAAAGACTTGAGGCAAAATATCACAGCGATCTGTCTATTAACTTCCATAATCTTGTTGTTTTTGGATAGGCTGCTTTTACATTATTTTGTTTACTGTTTATTTAAGATTATGCACCTTATACTTAGAGGAGTGCCCAAGTGATTGTGACTAGGTTCATTGAAGAACTGTAATATATATAGATCAGAGGTATAAACTTTCCTTTTAGAAGGTTGTTGCAATACCATTTTTGGATGCTTCACTTTGATTTGAAAGAAAATTTTGGATGCATTCTTGTACAATTTCTTTTGAGTAGGAGATCTTGTTTTATCTTGTTCGTTCAGCTTTTAATGTTTAGTTTTTACTTCAGGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGGTATGCTTTCGTTCTCTGTATTTCAATTCACTTGTCAGGCTCTTTTACTGATCGGTTTTGGACTTAGCTACATGAAATCTACCTGATAGCTAAATTTTAGAGACATCAGGAAGGCTATTGTTGAGGGAAAGACTATTAAGCACACACTTAAAAACCTCACATTAAGGGAAGGATTATTTAAAAGAATAATAATGTCAGAAACCTGGAGATCAATAGAAAACTCCCATCATTGTGAGAAATGCAAATGGGTCTAAGAATTGATCCACCTTACTAAGCTTCGGTTTGGCAGTGTTTACGATAAGGTACATTGTTGTTATTCTTTAACCCTTTTGATCTCACTCCAATTTTATATTGATCAACTATTCGACCAGAGGGGTGATTCCGTTAGGAAAATTCGATCAAACGTTTGTAAGAAGTGGAAATTTGGGATGCCTCATTGCAAGATTGCAACCTCACAAGTTGTTCTATATTAGAGTTTAGAATTGGATAGTTCGTAGAGACAGAATACTGAAAGACCAGTGTTAGGCCACCCTTCCACATAAACAGTTAGACTCCAATTGTGGCCAAGTTAGGAGTTCAAGTTTAAAGTAAGTACTCATCTCATTGACTATGAGTCCTTGAAAATACTAATATCCAAGGGGATCATTTGTGTCGATGGGGATTACAACTTTACCTTTTAAGGTTCCTTTTGGTTAAAAGAAACCCCTTCTCATGGTTGTCTGATTGAGCTTCCTTACTGGTAAGAGCTTACCATGTTTCTCCCCAAAGGAGAGGGGTCCTTGAGGTCAAAACCCCCTTTATTCATTAGCCCATTGAAAAGCCTTCCAGTGAAGGCATCTATCGTGTTATTTTGACATGTTTGATTTGAAGGATTAGAGTTGGTAATTAAAGTGAAGAAGAATTTCCATGATCTATCGTAGGTGTCTTTTGTTCAAATCAAACAACAAAACAAAATCAATTGGGTAGAAACTACCGGGTGAAAGGGAGTATTCGTACAAGTCTATTGTCAACTAGCGAAAGACCAATGGCAGTTGAATCTATTGAGAACAAAGTGTAGCTCTGATACCAACTGTCAAGCTTATTGGTCGTTAGGGGAATGGATTCACAATTTGTTCTCAATAAAATTGTGAACCCATTCCCCTAACGGCCAATAAACTTGAGAAAAATTTCAGTCCCAATTCATCCCTAGGAATGTTTCTCAGTAGTCAGTTCTATTCCGATATGCTAGTGATATTTCCATGAAGACTACAATGTAGTACTTAGGCTGCCATGTACCGTTTCTATGATGGGCAACCATAAGTCATTCCCCAGTTAAGAGAATCATAATGCTCGAATCTATTTTAACGTTGTTAACCAAGTTTTCGTCATTGGAAATAGCAGACAGGTAGTTTATGTGGGGTTAATTGTTGGAGCAGGATCGGGTTCTTTCTTTTTTCTTTTTTGATTGAAAGTGGAAATAGAACTACATTGCTCAGCTTAGTATCATGGTTGCTCACATGCCTTTCCCTAGCTGCAAGCTACTTGTCTCATTACTCATTGCGCTTGGTGACGGTCACCCCCATAACATTGATCTTTGGAATGATTTAACTTGCACATACACTTCGTCACTTACAACCGTTGTCTTCAACAATACGTAGATGTTGATGTTCAAATATTTGACCATTTGTGTCGATGTTTCCTTGACTAGTTGAGCTATGCTTAGATCGATGGTAGATAGTAGTCTTGTCACCACATTTGAACTTGTTGGTATAGGTGGCATGTCAACCTATTGTGAGCTAACCTTAGAGAAGCTTACTTAATCTCTGATTCACTAACATCTTTCTGTTGCTGATACATGGTAAAGATGACCTAAAACTAAAAGTACATGACAATAGCTAGATAAATTAAGTGTTATTTCTTTCCTCAATTATGCTGTGATAAATCAAAGTAACCAAGTATGATGACTATTAACTTCAAGCCTTGAGATTCAGTCGACAGCTGCAAGCAAATACATTTCCTACTATAGTCATTCGTCTATGAGTACTCTCTGAATGTTCCCTTACTCATCTACATTCGATGCTTGCAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGATCATAGTGTTCTTCCTCTGTTTGAAAAGAGTGTAAGTTTTTTCCTCTTAGGTTATGTTCAACCTCCTCTTTTACCATACTTTAGGACTGCCAATGAATTGTTGCAACTTTTTTTTAATAGTTCAATACACCTGCCTCACAAGATCGCCAAACGGATGCCTGGGCTGACAAGTCCTCACTTCTTTCTGCATCTCAAAGTGTAATTTCCACCGAGTATCCTCCATCTTCAAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTTCATCCTCTGGTATTTCTCTCTATGGACCAGATCGAGTGCTTCCTGCAATTCGATCATCAGGTGTTGGTCGCTCCGGTGTGCCTATTGTCACTCAGGTTGGTATATGTAGTTATTGGTTGAAGGAAATGGTCTATGTTGACTCAGGCCTTGTGAGGCTGCAAACTATACCATCATTGCATGTCCATTTTTCTTTTTCCAGTCTTGATGTCCAGACAAGCTGGAAGCTTGTTAGCTTTACATGTCCATCGTGCCTTGGAAACACTATGTCCAAAATGTTTGGCATATTGCATACAAATATTATTTAGCATAATGCTGAATGGAGGCCGTGGGGTCACACAGTAGTTACCGAGTTCGTCTTTATCATCTTTGACCGAGTCACCTCTTTGTGGTTCCTGTCAGGTCACGCAGACAATGCAAATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAGCAAATATCGCATTCATCCGTCGCAATAGTGGTGCAATCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCACTGTGGAAATAAAAGGCACTTCCTCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAATTTCCCCGTTTGACTATTAACTTTCTGGTTATTGCTTGTTACGGTCCATAGCGTTGCGCTGCGATACTCTGTTTCCCATGTCATGCAAAAAGTTACTTATATTTCATTGTACAACTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACTCTCTTATAAGGGTGTTTTGTTCT

mRNA sequence

TTTAAAATTTTATTATTTCAATAATTTACAAAAATAAAAAGAAAAAAAGAAAAAAGAAAAAAGAAAAAAAAAACCTGCATTTCCTTACTTTCTTCCTCTCTTCCTTCGTCCTCTTTAAACCTCTGAAAATCTTAACCCTAACTTCTTCCTCCTTCTTCATCCTTCTTCATCTTCCTCCATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGATCATAGTGTTCTTCCTCTGTTTGAAAAGAGTTTCAATACACCTGCCTCACAAGATCGCCAAACGGATGCCTGGGCTGACAAGTCCTCACTTCTTTCTGCATCTCAAAGTGTAATTTCCACCGAGTATCCTCCATCTTCAAAAAGAGAATCTCTGTTTCTTGACCGAGAAACTCATCTTGATTCTCATATTTCATCCTCTGGTATTTCTCTCTATGGACCAGATCGAGTGCTTCCTGCAATTCGATCATCAGGTGTTGGTCGCTCCGGTGTGCCTATTGTCACTCAGGTCACGCAGACAATGCAAATCCCGTTATCTTATGCTGAGGACATCATTGGGGTTGGAGGAGCAAATATCGCATTCATCCGTCGCAATAGTGGTGCAATCTTAACCATACAAGAGAGCAGGGGATTACCGGATGAAATCACTGTGGAAATAAAAGGCACTTCCTCACAAGTTCAGATGGCTCAACAATTAATTCAGGTAATATTTAATTTCCCCGTTTGACTATTAACTTTCTGGTTATTGCTTGTTACGGTCCATAGCGTTGCGCTGCGATACTCTGTTTCCCATGTCATGCAAAAAGTTACTTATATTTCATTGTACAACTGTAACGGCCCAGATCCACCGCTAGCAGATATTGTCATCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACTCTCTTATAAGGGTGTTTTGTTCT

Coding sequence (CDS)

ATGGCCACCAACACAACTACAGAGAATGGCTCCACTGATGCCGACGCCCTCAATTCAAGCCCCCAACTTGCCTTTGAAGCTGCTCCCGAACCGGACTCTACGGAAGCCGGTGGCGCCGAATCCGACATTGATCCCTCTAACCAAGACTATTTATCGGCACCCGCTTCGGATTCTGTACCTCACGAAAGTCCCAATCATGCTGGCGCTTCCGATAAAAAGTGGCCTGGATGGCCCGGAGACTGCGTCTTCCGGCTTATTGTACCGGTCGTTAAAGTCGGCAGCATTATTGGGCGCAGGGGCGATCTTATCAAGAAGATCTGTGAGGAAACTAGGGCTAGAATTCGTGTTCTTGATGGTGCTGTTGGCACTCCTGATCGCGTCGTGCTAATTTCAGGAAAGGAAGAGCCTGAGGCACCCCTTTCCCCTGCAATGGATGCAGTTTTAAGAATCTTTAAACGTGTGTCTGGATTTTCTGAGAATGAAGATGAGGCTAAAGCTTCATTCTGTTCGGTCCGGTTACTGGTGGCATCAACTCAAGCAATCAATCTAATTGGAAAGCAGGGTTCATTAATCAAATCCATACAGGAGAGTACAGGGGCTTCTGTGAGAGTTTTATCAGGAGATGAGATGCCATTCTATGCTGGTCCGGATGAGAGAATGGTGGAACTTGCAGGGAGAAACCTTAAAGGTTCTCAAGGCTCTAGAGGCAGTGGTGGGCCACCTAAGGAAGTTTTTAGTTGA

Protein sequence

MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGGPPKEVFS

Homology

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BLAST of Carg24193 vs. NCBI nr
Match: XP_022965514.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 432.2 bits (1110), Expect = 1.2e-117
Identity = 222/229 (96.94%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQ YLSAPASDSVP
Sbjct: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQVYLSAPASDSVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHA ASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAVASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERM+EL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMLELQGETLK 229

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BLAST of Carg24193 vs. NCBI nr
Match: XP_022938096.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 7.8e-117
Identity = 220/229 (96.07%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDADALNSS QLAFEAAPEPDSTEA GAES IDPSNQDYLSAPASDS+P
Sbjct: 1   MATNTTTENGSTDADALNSSAQLAFEAAPEPDSTEASGAESGIDPSNQDYLSAPASDSLP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAP SPAMDAVLR+FKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPFSPAMDAVLRVFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

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BLAST of Carg24193 vs. NCBI nr
Match: XP_023538336.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 7.8e-117
Identity = 221/229 (96.51%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATN TTENGSTDADALNSSPQLA EAA EPDSTEAGGAESDIDPSNQDYLSAPASD VP
Sbjct: 1   MATNATTENGSTDADALNSSPQLACEAAAEPDSTEAGGAESDIDPSNQDYLSAPASDYVP 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HESPNHAGASDKKWPGWPGDCVFR+IVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA
Sbjct: 61  HESPNHAGASDKKWPGWPGDCVFRIIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVEL G  LK
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELQGETLK 229

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BLAST of Carg24193 vs. NCBI nr
Match: XP_022929700.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata])

HSP 1 Score: 384.4 bits (986), Expect = 2.9e-103
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SVPH-ESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLK 233

[Close]

BLAST of Carg24193 vs. NCBI nr
Match: XP_022996845.1 (RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima])

HSP 1 Score: 384.4 bits (986), Expect = 2.9e-103
Identity = 200/233 (85.84%), Postives = 213/233 (91.42%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQ---LAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASD 60
           MATNT T+NGSTDA+ALN +P+   LA  AA EPDS EAGGAESD+DPSNQDYLSAPASD
Sbjct: 1   MATNTATDNGSTDANALNFNPESSPLASVAAAEPDSMEAGGAESDLDPSNQDYLSAPASD 60

Query: 61  SVPH-ESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRV 120
           S  H ESPNH  ASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRV
Sbjct: 61  SADHDESPNHTDASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRV 120

Query: 121 LDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVA 180
           LDGAVGTPDRVVLISGKE+PEAPLSPAMDAV+R+FKRV  FSENEDEAK SFCS+RLLVA
Sbjct: 121 LDGAVGTPDRVVLISGKEDPEAPLSPAMDAVIRVFKRVFLFSENEDEAKTSFCSIRLLVA 180

Query: 181 STQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           STQAINLIGKQGSLIKSIQESTGAS+RVLSGDEMPFYAG DERMVEL G +LK
Sbjct: 181 STQAINLIGKQGSLIKSIQESTGASIRVLSGDEMPFYAGADERMVELQGESLK 233

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BLAST of Carg24193 vs. TAIR10
Match: AT4G26000.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 244.2 bits (622), Expect = 8.4e-65
Identity = 120/170 (70.59%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 64  PNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGT 123
           P+   +++++WPGWPGDCVFR+IVPV KVG+IIGR+GD IKK+CEETRARI+VLDG V T
Sbjct: 57  PDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNT 116

Query: 124 PDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDE----AKASFCSVRLLVASTQ 183
           PDR+VLISGKEEPEA +SPAMDAVLR+F+RVSG  +N+D+    A + F SVRLLVASTQ
Sbjct: 117 PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176

Query: 184 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           AINLIGKQGSLIKSI E++GASVR+LS +E PFYA  DER+V+L G  LK
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226

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BLAST of Carg24193 vs. TAIR10
Match: AT3G04610.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-44
Identity = 90/170 (52.94%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 58  SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVL 117
           S P E     G  +K+WPGWPG+ VFR++VP  KVGSIIGR+GD+IKKI EETRARI++L
Sbjct: 165 SEPEEDAT-VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL 224

Query: 118 DGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKR-VSGFSENEDEA-KASFCSVRLLV 177
           DG  GT +R V++SGKEEPE+ L P+MD +LR+  R V G      +A   S  S RLLV
Sbjct: 225 DGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLV 284

Query: 178 ASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAG 226
            ++QA +LIGKQG  +K+IQE++   VRVL  +++P +A  D+R+VE+ G
Sbjct: 285 PASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333

[Close]

BLAST of Carg24193 vs. TAIR10
Match: AT1G51580.1 (RNA-binding KH domain-containing protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-17
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 0


Query: 60  PHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDG 119
           P+  P   G  ++  P    +  FRL+ P  KVGS+IG+ G +++ +  E+ A I+V D 
Sbjct: 257 PNPMPEDVGPFNR--PVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDP 316

Query: 120 AVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQ 179
              + +R+++IS +E  E   S A D V+R+  R+         A  +    RLLV S  
Sbjct: 317 THDSEERIIVISARENLERRHSLAQDGVMRVHNRIVEIGFEPSAAVVA----RLLVHSPY 376

Query: 180 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGS----- 239
              L+GK G LI  ++ +TGAS+RV + D+   Y    + +V++ G NLK  Q +     
Sbjct: 377 IGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIG-NLKTVQDALFQIL 436

Query: 240 --------------RGSGGPP 242
                         +G GGPP
Sbjct: 437 CRLREAMFPGRLPFQGMGGPP 450

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BLAST of Carg24193 vs. TAIR10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-17
Identity = 50/142 (35.21%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL+ PV  + S+IG+ G LI ++ +ETRA I+V        D ++ IS +E  E   SP 
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPT 346

Query: 144 MDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVR 203
           ++AV+R+  + S   E  D    SF + RLLV S++   ++GK G++I  ++  T A++R
Sbjct: 347 IEAVMRLQPKCSDKVE-RDSGLVSF-TTRLLVPSSRIGCILGKGGAIITEMRRMTKANIR 406

Query: 204 VLSGDEMPFYAGPDERMVELAG 226
           +L  + +P  A  D+ MV+++G
Sbjct: 407 ILGKENLPKVASDDDEMVQISG 426

[Close]

BLAST of Carg24193 vs. TAIR10
Match: AT1G14170.3 (RNA-binding KH domain-containing protein)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-16
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 86  IVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPAMD 145
           I P   VG +IG+ G  I +I +ET A IRV        D ++ IS KE  E   SPA++
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYE-DQSPAVN 333

Query: 146 AVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASVRVL 205
           A +R+ +R S   +   +A     S RLLV+S+Q   LIGK G++I  ++  T A++R+L
Sbjct: 334 AAIRLQQRCS--EKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRIL 393

Query: 206 SGDEMPFYAGPDERMVELAG 226
             +++P  A  DE MV++ G
Sbjct: 394 QKEDVPKIAREDEEMVQITG 410

[Close]

BLAST of Carg24193 vs. Swiss-Prot
Match: sp|Q9SZH4|PEP_ARATH (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-63
Identity = 120/170 (70.59%), Postives = 145/170 (85.29%), Query Frame = 0


Query: 64  PNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGT 123
           P+   +++++WPGWPGDCVFR+IVPV KVG+IIGR+GD IKK+CEETRARI+VLDG V T
Sbjct: 57  PDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNT 116

Query: 124 PDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDE----AKASFCSVRLLVASTQ 183
           PDR+VLISGKEEPEA +SPAMDAVLR+F+RVSG  +N+D+    A + F SVRLLVASTQ
Sbjct: 117 PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQ 176

Query: 184 AINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           AINLIGKQGSLIKSI E++GASVR+LS +E PFYA  DER+V+L G  LK
Sbjct: 177 AINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226

[Close]

BLAST of Carg24193 vs. Swiss-Prot
Match: sp|Q9SR13|FLK_ARATH (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.0e-43
Identity = 90/170 (52.94%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 58  SVPHESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVL 117
           S P E     G  +K+WPGWPG+ VFR++VP  KVGSIIGR+GD+IKKI EETRARI++L
Sbjct: 165 SEPEEDAT-VGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKIL 224

Query: 118 DGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKR-VSGFSENEDEA-KASFCSVRLLV 177
           DG  GT +R V++SGKEEPE+ L P+MD +LR+  R V G      +A   S  S RLLV
Sbjct: 225 DGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLV 284

Query: 178 ASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAG 226
            ++QA +LIGKQG  +K+IQE++   VRVL  +++P +A  D+R+VE+ G
Sbjct: 285 PASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVG 333

[Close]

BLAST of Carg24193 vs. Swiss-Prot
Match: sp|F4KDN0|HEN4_ARATH (KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.8e-14
Identity = 40/148 (27.03%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 80  DCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAP 139
           D VF+++      G +IG  G +++ +  ET A I V +      +R++ ++  E PE  
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510

Query: 140 LSPAMDAVLRIFKRVSGFSENE--DEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQES 199
            SPA  A++ IF R+   + N+  D    S  + RL+V ++Q   ++GK G ++  ++++
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570

Query: 200 TGASVRVLSGDEMPFYAGPDERMVELAG 226
           TGA++++L  ++ P     ++++V++ G
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITG 598

[Close]

BLAST of Carg24193 vs. Swiss-Prot
Match: sp|Q5E9A3|PCBP1_BOVIN (Poly(rC)-binding protein 1 OS=Bos taurus OX=9913 GN=PCBP1 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL++   +VGSIIG++G+ +K+I EE+ ARI + +G    P+R++ ++G   P   +  A
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 76

Query: 144 MDAVL-RIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASV 203
              ++ ++ + ++    N   A     ++RL+V +TQ  +LIGK G  IK I+ESTGA V
Sbjct: 77  FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 136

Query: 204 RVLSGDEMPFYAGPDERMVELAG 226
           +V +GD +P      ER + +AG
Sbjct: 137 QV-AGDMLP---NSTERAITIAG 150

[Close]

BLAST of Carg24193 vs. Swiss-Prot
Match: sp|Q15365|PCBP1_HUMAN (Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 51/143 (35.66%), Postives = 86/143 (60.14%), Query Frame = 0


Query: 84  RLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVLISGKEEPEAPLSPA 143
           RL++   +VGSIIG++G+ +K+I EE+ ARI + +G    P+R++ ++G   P   +  A
Sbjct: 17  RLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLTG---PTNAIFKA 76

Query: 144 MDAVL-RIFKRVSGFSENEDEAKASFCSVRLLVASTQAINLIGKQGSLIKSIQESTGASV 203
              ++ ++ + ++    N   A     ++RL+V +TQ  +LIGK G  IK I+ESTGA V
Sbjct: 77  FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 136

Query: 204 RVLSGDEMPFYAGPDERMVELAG 226
           +V +GD +P      ER + +AG
Sbjct: 137 QV-AGDMLP---NSTERAITIAG 150

[Close]

BLAST of Carg24193 vs. TrEMBL
Match: tr|A0A0A0LMH4|A0A0A0LMH4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 5.9e-97
Identity = 193/239 (80.75%), Postives = 202/239 (84.52%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTTENGSTDA     S  L   AA EPDSTEAG  +S   PSNQDY S P SDS  
Sbjct: 1   MATNTTTENGSTDAIPNPLSSTLPSLAAAEPDSTEAGDDDSXXXPSNQDYSSVPPSDSAA 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HE  NH G SDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRVLDGA
Sbjct: 61  HEPSNHTGPSDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEE E+PLSPAMDAV+R+FKRVSG SENEDEAKASFCS+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELESPLSPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGG 240
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAG DERMVEL G +LK  +   G  G
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVG 239

[Close]

BLAST of Carg24193 vs. TrEMBL
Match: tr|A0A1S4E0X0|A0A1S4E0X0_CUCME (RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo OX=3656 GN=LOC103492560 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 1.3e-96
Identity = 192/239 (80.33%), Postives = 204/239 (85.36%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSPQLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSVP 60
           MATNTTT+NGSTDA A   S  L   AA E DSTE G  +SDIDPSNQDY S P SDS  
Sbjct: 1   MATNTTTDNGSTDAIANPQSSTLPSLAAAEADSTEVGDDDSDIDPSNQDYSSLPPSDSAA 60

Query: 61  HESPNHAGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGA 120
           HE  +H GASDKKWPGWPGDCVFRLIVPVVKVGSIIGR+GDLIKK+CEETRARIRVLDGA
Sbjct: 61  HEPSSHTGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGA 120

Query: 121 VGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRLLVASTQA 180
           VGTPDRVVLISGKEE ++PLSPAMDAV+R+FKRVSG SENEDEAKASF S+RLLVASTQA
Sbjct: 121 VGTPDRVVLISGKEELDSPLSPAMDAVIRVFKRVSGLSENEDEAKASFSSIRLLVASTQA 180

Query: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLKGSQGSRGSGG 240
           INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAG DERMVEL G +LK  +   G  G
Sbjct: 181 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVG 239

[Close]

BLAST of Carg24193 vs. TrEMBL
Match: tr|F6GXK2|F6GXK2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0052g00030 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.1e-70
Identity = 137/169 (81.07%), Postives = 153/169 (90.53%), Query Frame = 0


Query: 67  AGASDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDR 126
           A AS+KKWPGWPGDCVFRLIVPV+KVGSIIGR+G+LIKK+CEETRARIRVLDGAVGT DR
Sbjct: 64  APASEKKWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDR 123

Query: 127 VVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKA------SFCSVRLLVASTQA 186
           +VLISG+EEPEAPLSPAMDAV+R+FKRV+G SE+E + KA      +FCS+RLLVASTQA
Sbjct: 124 IVLISGREEPEAPLSPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQA 183

Query: 187 INLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           INLIGKQGSLIKSIQESTGASVRVLSGDE+PFYA  DER+VEL G  LK
Sbjct: 184 INLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALK 232

[Close]

BLAST of Carg24193 vs. TrEMBL
Match: tr|M5XYS8|M5XYS8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G074800 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.2e-70
Identity = 134/166 (80.72%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 70  SDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRARIRVLDGAVGTPDRVVL 129
           +DK+WPGWPGDCVFRLIVPV+KVGSIIGR+G+LIKK+CEETRARIRVLDGAVGTPDR+VL
Sbjct: 80  ADKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVL 139

Query: 130 ISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKAS------FCSVRLLVASTQAINL 189
           ISG+EEPEAPLSPAMDAV+RIFKR+SG +++E +AK S      FCS+RLLVASTQAINL
Sbjct: 140 ISGREEPEAPLSPAMDAVIRIFKRISGLADSEGDAKVSGPAGVAFCSIRLLVASTQAINL 199

Query: 190 IGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           IGKQGSLIKSIQESTGASVRVLSGDE+PFYA  +ER+VEL G  LK
Sbjct: 200 IGKQGSLIKSIQESTGASVRVLSGDEVPFYAAAEERIVELQGEALK 245

[Close]

BLAST of Carg24193 vs. TrEMBL
Match: tr|W9SIR6|W9SIR6_9ROSA (Poly(RC)-binding protein 3 OS=Morus notabilis OX=981085 GN=L484_005636 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.2e-70
Identity = 157/236 (66.53%), Postives = 177/236 (75.00%), Query Frame = 0


Query: 1   MATNTTTENGSTDADALNSSP-QLAFEAAPEPDSTEAGGAESDIDPSNQDYLSAPASDSV 60
           MATN  T NG T A   +S P      AA    + +A   E      N++  S PA    
Sbjct: 1   MATNEPTANGVTKAPKSDSQPIPSDATAAASTANEKAPVTEPGHATGNRNMESEPAPXXX 60

Query: 61  PHESP-NHAGA-----SDKKWPGWPGDCVFRLIVPVVKVGSIIGRRGDLIKKICEETRAR 120
               P ++AG      +DKKW GWPGDCVFRLIVPV+KVGSIIGR+G+LIKK+CEETRAR
Sbjct: 61  XXXXPASNAGTTATTDADKKWLGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRAR 120

Query: 121 IRVLDGAVGTPDRVVLISGKEEPEAPLSPAMDAVLRIFKRVSGFSENEDEAKASFCSVRL 180
           IRVLDGAVGTPDR+VLISGKEEPEA LSPAMDAV+R+FKRVSG SENE  A  +FCS+RL
Sbjct: 121 IRVLDGAVGTPDRIVLISGKEEPEAALSPAMDAVIRVFKRVSGLSENE-AAGVAFCSIRL 180

Query: 181 LVASTQAINLIGKQGSLIKSIQESTGASVRVLSGDEMPFYAGPDERMVELAGRNLK 230
           LVASTQAINLIGKQGSLIKSIQESTGASVRVL+GDE+PFYA  DER+VEL G  LK
Sbjct: 181 LVASTQAINLIGKQGSLIKSIQESTGASVRVLTGDEVPFYAAADERIVELQGEGLK 235

The following BLAST results are available for this feature:

BLAST of Carg24193 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965514.1	1.2e-117	96.94	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]
XP_022938096.1	7.8e-117	96.07	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]
XP_023538336.1	7.8e-117	96.51	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo...	[more]
XP_022929700.1	2.9e-103	85.84	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]	[more]
XP_022996845.1	2.9e-103	85.84	RNA-binding KH domain-containing protein PEPPER-like [Cucurbita maxima]	[more]

BLAST of Carg24193 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26000.1	8.4e-65	70.59	RNA-binding KH domain-containing protein	[more]
AT3G04610.1	1.6e-44	52.94	RNA-binding KH domain-containing protein	[more]
AT1G51580.1	1.7e-17	30.85	RNA-binding KH domain-containing protein	[more]
AT5G15270.2	3.8e-17	35.21	RNA-binding KH domain-containing protein	[more]
AT1G14170.3	2.5e-16	37.86	RNA-binding KH domain-containing protein	[more]

BLAST of Carg24193 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SZH4\|PEP_ARATH	1.5e-63	70.59	RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9SR13\|FLK_ARATH	3.0e-43	52.94	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]
sp\|F4KDN0\|HEN4_ARATH	3.8e-14	27.03	KH domain-containing protein HEN4 OS=Arabidopsis thaliana OX=3702 GN=HEN4 PE=1 S...	[more]
sp\|Q5E9A3\|PCBP1_BOVIN	1.4e-13	35.66	Poly(rC)-binding protein 1 OS=Bos taurus OX=9913 GN=PCBP1 PE=2 SV=1	[more]
sp\|Q15365\|PCBP1_HUMAN	1.4e-13	35.66	Poly(rC)-binding protein 1 OS=Homo sapiens OX=9606 GN=PCBP1 PE=1 SV=2	[more]

BLAST of Carg24193 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMH4\|A0A0A0LMH4_CUCSA	5.9e-97	80.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G061550 PE=4 SV=1	[more]
tr\|A0A1S4E0X0\|A0A1S4E0X0_CUCME	1.3e-96	80.33	RNA-binding KH domain-containing protein PEPPER OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|F6GXK2\|F6GXK2_VITVI	2.1e-70	81.07	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0052g00030 PE=4 SV=...	[more]
tr\|M5XYS8\|M5XYS8_PRUPE	6.2e-70	80.72	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G074800 PE=4 SV=1	[more]
tr\|W9SIR6\|W9SIR6_9ROSA	6.2e-70	66.53	Poly(RC)-binding protein 3 OS=Morus notabilis OX=981085 GN=L484_005636 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036612	KH_dom_type_1_sf
IPR004088	KH_dom_type_1
IPR004087	KH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24193-RA	Carg24193-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 167..233 e-value: 0.009 score: 25.2 coord: 79..152 e-value: 6.2E-11 score: 52.3
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 171..227 e-value: 4.5E-9 score: 35.9 coord: 83..135 e-value: 8.3E-12 score: 44.7
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 165..232 e-value: 3.4E-12 score: 47.9
IPR036612	K Homology domain, type 1 superfamily	GENE3D	G3DSA:3.30.1370.10		coord: 80..154 e-value: 6.7E-15 score: 56.3
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 74..155
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 165..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..246
None	No IPR available	PANTHER	PTHR10288:SF132	RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER	coord: 47..229
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 47..229
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 80..147 score: 14.194
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 168..225 score: 11.594
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 170..225 e-value: 3.00433E-14 score: 64.0347
None	No IPR available	CDD	cd02396	PCBP_like_KH	coord: 82..151 e-value: 1.68611E-20 score: 81.3687

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24193	Cla022779	Watermelon (97103) v1	carwmB0994
Carg24193	Csa2G061550	Cucumber (Chinese Long) v2	carcuB1009
Carg24193	MELO3C003974	Melon (DHL92) v3.5.1	carmeB0970
Carg24193	ClCG11G011750	Watermelon (Charleston Gray)	carwcgB0969
Carg24193	CSPI02G06420	Wild cucumber (PI 183967)	carcpiB1033
Carg24193	Cucsa.089000	Cucumber (Gy14) v1	carcgyB1112
Carg24193	CmaCh05G007150	Cucurbita maxima (Rimu)	carcmaB1379
Carg24193	CmaCh12G009130	Cucurbita maxima (Rimu)	carcmaB1378
Carg24193	CmoCh05G007520	Cucurbita moschata (Rifu)	carcmoB1334
Carg24193	CmoCh12G009180	Cucurbita moschata (Rifu)	carcmoB1333
Carg24193	Lsi11G007930	Bottle gourd (USVL1VR-Ls)	carlsiB908
Carg24193	Cp4.1LG11g06100	Cucurbita pepo (Zucchini)	carcpeB1381
Carg24193	Cp4.1LG07g07550	Cucurbita pepo (Zucchini)	carcpeB1382
Carg24193	CsGy2G006570	Cucumber (Gy14) v2	carcgybB0982
Carg24193	MELO3C003974.2	Melon (DHL92) v3.6.1	carmedB0980
Carg24193	CsaV3_2G008740	Cucumber (Chinese Long) v3	carcucB1039
Carg24193	Cla97C11G217730	Watermelon (97103) v2	carwmbB1048
Carg24193	Bhi06G001068	Wax gourd	carwgoB1164

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24193	Carg23938	Silver-seed gourd	carcarB547

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24193	Cucumber (Gy14) v2	carcgybB0981
Carg24193	Wild cucumber (PI 183967)	carcpiB1032
Carg24193	Cucumber (Chinese Long) v2	carcuB1008
Carg24193	Cucumber (Chinese Long) v3	carcucB1038
Carg24193	Bottle gourd (USVL1VR-Ls)	carlsiB909
Carg24193	Melon (DHL92) v3.5.1	carmeB0969
Carg24193	Melon (DHL92) v3.6.1	carmedB0979
Carg24193	Watermelon (Charleston Gray)	carwcgB0970
Carg24193	Watermelon (97103) v1	carwmB0995
Carg24193	Watermelon (97103) v2	carwmbB1049
Carg24193	Wax gourd	carwgoB1165