CmaCh04G015270 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G015270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 7732208 .. 7732691 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCAAAGCAGAGCTCAACACACAAGTAGCAGAAGAAGATGATAGTTACTATGCTGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTCGAACGACCTCCCAAAACTGCAGCAAAACGAGGTGCAGAACAAAGCGGTCGTTGTCACCCACAGGCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGAACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCCAATTCAAAAGATACAGTATTTTCAGTATGTTCCTGTCTTGACTTTCGAGTTTCATAAGCACAAGGCAATATTTAACATAACATCACTTCTTGATTTTGTGTTGCAGGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAAGACCAAGGATCATCCATGTTTTCAGGAGGCTAA

mRNA sequence

ATGGATTTCAAAGCAGAGCTCAACACACAAGTAGCAGAAGAAGATGATAGTTACTATGCTGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTCGAACGACCTCCCAAAACTGCAGCAAAACGAGGTGCAGAACAAAGCGGTCGTTGTCACCCACAGGCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGAACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCCAATTCAAAAGATACAGTATTTTCAGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAAGACCAAGGATCATCCATGTTTTCAGGAGGCTAA

Coding sequence (CDS)

ATGGATTTCAAAGCAGAGCTCAACACACAAGTAGCAGAAGAAGATGATAGTTACTATGCTGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTCGAACGACCTCCCAAAACTGCAGCAAAACGAGGTGCAGAACAAAGCGGTCGTTGTCACCCACAGGCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGAACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCCAATTCAAAAGATACAGTATTTTCAGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAAGACCAAGGATCATCCATGTTTTCAGGAGGCTAA

Protein sequence

MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHPQAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHRLNRQDQGSSMFSGG

Homology

[Close]

BLAST of CmaCh04G015270 vs. TrEMBL
Match: A0A0A0KT55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-46
Identity = 92/120 (76.67%), Postives = 104/120 (86.67%), Query Frame = 1


Query: 1   MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGR-CHP 60
           MDFKAELNTQ+ EE+D YYAEIRKQI LLLT YDDD++VE+ PKTAAK GAE   R C P
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHR 120
           Q ERN+S C NGND +EPVWHVNSWENGNGTGVFIPQAV++K+Y +FRR+RKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

[Close]

BLAST of CmaCh04G015270 vs. TrEMBL
Match: A0A067FRN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042679mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHP--------QAERNL 73
           EDD +YAE+R+QI+LL    D DED     K ++   A + G  H         Q     
Sbjct: 16  EDDVFYAELRRQILLLTADEDGDEDHFLERKHSSSISAGKRGSSHGLTSFSSALQPGSYF 75

Query: 74  SWCLNGNDLEE-PVWHVNSWENGNGTGVFIPQAVQFKRYS 105
           +WC + N+    P W VN W  GNGTGVFIP  V+ +R++
Sbjct: 76  NWCESENNSNTAPTWLVNLWRYGNGTGVFIPHIVKSRRHN 115

[Close]

BLAST of CmaCh04G015270 vs. TrEMBL
Match: A0A061EB05_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-07
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 1


Query: 13  EEDDSYYAEIRKQIILLLTTYDDDEDVERP----PKTAAKRGAEQS-GRCHPQAERN--- 72
           +EDD +YA+IR++I+LL  T DDDED +      P    K G+ ++ G      +     
Sbjct: 17  DEDDVFYADIRRRILLL--TADDDEDCQETKSFHPVCNGKPGSNRAVGNLSSSLQYGGYF 76

Query: 73  LSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHE 114
            SW     D   P W  N W NGNGTGVFIP  V+ +R+    RM K +
Sbjct: 77  SSWESENTD-SVPTWLANLWRNGNGTGVFIPHIVKSRRHHRPGRMNKRK 122

[Close]

BLAST of CmaCh04G015270 vs. TrEMBL
Match: B9ST25_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 13  EEDDSYYAEIRKQIILLLTTYDDDEDVERPPKT--AAKRGAEQSGRCHP---QAERNLSW 72
           E +D +YAE+R+QI LLLT   DD D  R  K+  + K G+ +     P   Q E   +W
Sbjct: 28  EAEDVFYAELRRQI-LLLTADSDDFDKIRCEKSLPSCKPGSNRLTGSFPVRLQPESYFNW 87

Query: 73  CLNGNDLEE-PVWHVNSWENGNGTGVFIPQAVQFKR 103
               N  +  P W VN W NGNGTGVFIP+A +  R
Sbjct: 88  WERQNTNDSVPTWLVNLWRNGNGTGVFIPRAAKAGR 122

[Close]

BLAST of CmaCh04G015270 vs. TrEMBL
Match: A0A0L9UTD4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g130400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHPQAERNLSWCLNGND 73
           +DDS+YAEIR+ I L LT+ D+D  VE   K   + G   S R    A+ + SW    + 
Sbjct: 6   DDDSFYAEIRRHI-LQLTSEDEDLSVE---KAFGEGGVGGSTRPPALAKHSCSWETQSS- 65

Query: 74  LEEPVWHVNSWENGNGTGVFIPQAVQFKRY 104
              P   VN W++G GTGVFIP+AV  K+Y
Sbjct: 66  -RSPHLTVNLWKSGRGTGVFIPRAVTAKKY 89

[Close]

BLAST of CmaCh04G015270 vs. NCBI nr
Match: gi|778705924|ref|XP_011655764.1| (PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 5.8e-46
Identity = 92/120 (76.67%), Postives = 104/120 (86.67%), Query Frame = 1


Query: 1   MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGR-CHP 60
           MDFKAELNTQ+ EE+D YYAEIRKQI LLLT YDDD++VE+ PKTAAK GAE   R C P
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHR 120
           Q ERN+S C NGND +EPVWHVNSWENGNGTGVFIPQAV++K+Y +FRR+RKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

[Close]

BLAST of CmaCh04G015270 vs. NCBI nr
Match: gi|659091473|ref|XP_008446569.1| (PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 6.6e-42
Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 1


Query: 1   MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCH-P 60
           MDFKAELNTQ+ EE+D YYAEIRKQIILLLT YDDDE  E+PP+TAAK GA+   R   P
Sbjct: 58  MDFKAELNTQITEEEDCYYAEIRKQIILLLTAYDDDE--EQPPRTAAKPGAKVQQRDRWP 117

Query: 61  QAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHR 120
           Q + NLS C NG D EEPVWHVNSWENGNGTGVFIPQAV++K+Y + RR+RKHERKEKHR
Sbjct: 118 QIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCVLRRLRKHERKEKHR 175

[Close]

BLAST of CmaCh04G015270 vs. NCBI nr
Match: gi|641851173|gb|KDO70044.1| (hypothetical protein CISIN_1g042679mg [Citrus sinensis])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHP--------QAERNL 73
           EDD +YAE+R+QI+LL    D DED     K ++   A + G  H         Q     
Sbjct: 16  EDDVFYAELRRQILLLTADEDGDEDHFLERKHSSSISAGKRGSSHGLTSFSSALQPGSYF 75

Query: 74  SWCLNGNDLEE-PVWHVNSWENGNGTGVFIPQAVQFKRYS 105
           +WC + N+    P W VN W  GNGTGVFIP  V+ +R++
Sbjct: 76  NWCESENNSNTAPTWLVNLWRYGNGTGVFIPHIVKSRRHN 115

[Close]

BLAST of CmaCh04G015270 vs. NCBI nr
Match: gi|1009155409|ref|XP_015895698.1| (PREDICTED: uncharacterized protein LOC107429511 [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 49/121 (40.50%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 13  EEDDSYYAEIRKQIILLLTTYDDDEDVERPPK-------------TAAKRGAEQS-GRCH 72
           EEDD +YAEIR+QI+LL  T DDDE+VE                 +A+K   + S GRC+
Sbjct: 34  EEDDIFYAEIRRQILLL--TADDDEEVEEEENFHESRNSIHPNSWSASKESLKGSKGRCY 93

Query: 73  P-QAERNLSWCLNGNDLEE--PVWHVNSWEN-GNGTGVFIPQAVQFKRYSIFRRMRKHER 116
           P +   N +   N     +  P W  N W+N GNGTGVFIPQ    KR    R+M +   
Sbjct: 94  PCEYNCNFNRWENKKVAADSIPNWLANLWKNNGNGTGVFIPQTNTSKRNQRLRKMNRERT 152

[Close]

BLAST of CmaCh04G015270 vs. NCBI nr
Match: gi|763813261|gb|KJB80113.1| (hypothetical protein B456_013G081200 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 39/104 (37.50%), Postives = 48/104 (46.15%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHPQAERNLSWCLNGND 73
           EDD +YAEIR+QI+LL    DDD        +   RGA  +  C  +     SWC     
Sbjct: 8   EDDGFYAEIRRQILLLTAEDDDDYQQTETNNSPPTRGA--ANLCRLRHASYFSWCAGEKT 67

Query: 74  LEEPVWHVNSWENGN----GTGVFIPQAVQFKRYSIFRRMRKHE 114
              P W  N W N N    GTGVFIP     +R+    RM K +
Sbjct: 68  SSAPTWLSNLWRNDNSNRTGTGVFIPHINNSRRWRRPSRMSKRK 109

The following BLAST results are available for this feature:

BLAST of CmaCh04G015270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT55_CUCSA	4.0e-46	76.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1	[more]
A0A067FRN8_CITSI	1.2e-08	39.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042679mg PE=4 SV=1	[more]
A0A061EB05_THECC	8.2e-07	38.53	Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1	[more]
B9ST25_RICCO	1.1e-06	42.71	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1	[more]
A0A0L9UTD4_PHAAN	2.4e-06	43.33	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g130400 PE=4 SV=1	[more]

BLAST of CmaCh04G015270 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705924\|ref\|XP_011655764.1\|	5.8e-46	76.67	PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus]	[more]
gi\|659091473\|ref\|XP_008446569.1\|	6.6e-42	74.17	PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo]	[more]
gi\|641851173\|gb\|KDO70044.1\|	1.7e-08	39.00	hypothetical protein CISIN_1g042679mg [Citrus sinensis]	[more]
gi\|1009155409\|ref\|XP_015895698.1\|	1.8e-07	40.50	PREDICTED: uncharacterized protein LOC107429511 [Ziziphus jujuba]	[more]
gi\|763813261\|gb\|KJB80113.1\|	2.4e-07	37.50	hypothetical protein B456_013G081200 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G015270.1	CmaCh04G015270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34956	FAMILY NOT NAMED	coord: 5..109 score: 8.8
None	No IPR available	PANTHER	PTHR34956:SF1	SUBFAMILY NOT NAMED	coord: 5..109 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G015270	Cucsa.283780	Cucumber (Gy14) v1	cgycmaB0806
CmaCh04G015270	Cla020376	Watermelon (97103) v1	cmawmB706
CmaCh04G015270	Csa5G608470	Cucumber (Chinese Long) v2	cmacuB730
CmaCh04G015270	MELO3C012226	Melon (DHL92) v3.5.1	cmameB658
CmaCh04G015270	ClCG05G022920	Watermelon (Charleston Gray)	cmawcgB662
CmaCh04G015270	CSPI05G25060	Wild cucumber (PI 183967)	cmacpiB737
CmaCh04G015270	CmoCh04G015970	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G015270	Lsi04G002780	Bottle gourd (USVL1VR-Ls)	cmalsiB682
CmaCh04G015270	Cp4.1LG01g13430	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G015270	MELO3C012226.2	Melon (DHL92) v3.6.1	cmamedB745
CmaCh04G015270	CsaV3_5G034090	Cucumber (Chinese Long) v3	cmacucB0867
CmaCh04G015270	Cla97C05G104800	Watermelon (97103) v2	cmawmbB766
CmaCh04G015270	Bhi07G001127	Wax gourd	cmawgoB0906
CmaCh04G015270	CsGy5G024540	Cucumber (Gy14) v2	cgybcmaB655
CmaCh04G015270	Carg01825	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G015270	Cucumber (Chinese Long) v3	cmacucB0817
CmaCh04G015270	Watermelon (97103) v2	cmawmbB758
CmaCh04G015270	Watermelon (97103) v2	cmawmbB771
CmaCh04G015270	Wax gourd	cmawgoB0850
CmaCh04G015270	Wax gourd	cmawgoB0893
CmaCh04G015270	Cucurbita maxima (Rimu)	cmacmaB114
CmaCh04G015270	Cucurbita maxima (Rimu)	cmacmaB165
CmaCh04G015270	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G015270	Cucurbita maxima (Rimu)	cmacmaB406
CmaCh04G015270	Cucumber (Gy14) v1	cgycmaB0801
CmaCh04G015270	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G015270	Cucurbita moschata (Rifu)	cmacmoB712
CmaCh04G015270	Wild cucumber (PI 183967)	cmacpiB695
CmaCh04G015270	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G015270	Cucumber (Chinese Long) v2	cmacuB686
CmaCh04G015270	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G015270	Melon (DHL92) v3.5.1	cmameB673
CmaCh04G015270	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G015270	Watermelon (Charleston Gray)	cmawcgB666
CmaCh04G015270	Watermelon (97103) v1	cmawmB699
CmaCh04G015270	Watermelon (97103) v1	cmawmB746
CmaCh04G015270	Cucurbita pepo (Zucchini)	cmacpeB696
CmaCh04G015270	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G015270	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G015270	Bottle gourd (USVL1VR-Ls)	cmalsiB693
CmaCh04G015270	Cucumber (Gy14) v2	cgybcmaB131
CmaCh04G015270	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G015270	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G015270	Melon (DHL92) v3.6.1	cmamedB755
CmaCh04G015270	Silver-seed gourd	carcmaB0836
CmaCh04G015270	Silver-seed gourd	carcmaB1442
CmaCh04G015270	Silver-seed gourd	carcmaB1443