CmoCh04G015970 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 8145238 .. 8145724 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCAAAGCAGAGCTCAACACACAGGTAGCAGAAGAAGATGATGGTTACTATGCCGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTTGAACGACCTCCCAAAACTGCAGCAAAACGAGGGGCAGAACAAAGCGGCCGTCGTCACCCACAGTCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGGACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCAAATACAAAAGATACAGTATTTTCAGTATGTTCCTGTCTTGTCTTTCGAGTTTCATAAGCACAAGGCAATACTTAACATAACATCACTTCTTGATTTTGTGTTGCAGGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAACAAGACCAAGGATCATCCGTGTTTTCAGGAGGCTAA

mRNA sequence

ATGGATTTCAAAGCAGAGCTCAACACACAGGTAGCAGAAGAAGATGATGGTTACTATGCCGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTTGAACGACCTCCCAAAACTGCAGCAAAACGAGGGGCAGAACAAAGCGGCCGTCGTCACCCACAGTCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGGACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCAAATACAAAAGATACAGTATTTTCAGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAACAAGACCAAGGATCATCCGTGTTTTCAGGAGGCTAA

Coding sequence (CDS)

ATGGATTTCAAAGCAGAGCTCAACACACAGGTAGCAGAAGAAGATGATGGTTACTATGCCGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTTGAACGACCTCCCAAAACTGCAGCAAAACGAGGGGCAGAACAAAGCGGCCGTCGTCACCCACAGTCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGGACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCAAATACAAAAGATACAGTATTTTCAGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAACAAGACCAAGGATCATCCGTGTTTTCAGGAGGCTAA
Homology
[Close]
BLAST of CmoCh04G015970 vs. TrEMBL
Match: A0A0A0KT55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.9e-44
Identity = 92/120 (76.67%), Postives = 102/120 (85.00%), Query Frame = 1 

Query: 1   MDFKAELNTQVAEEDDGYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRR-HP 60
           MDFKAELNTQ+ EE+D YYAEIRKQI LLLT YDDD++VE+ PKTAAK GAE   R   P
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QSERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRKHERKEKHR 120
           Q ERN+S C NGND + PVWHVNSWENGNGTGVFIPQAVKYK+Y +FRR+RKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

[Close]
BLAST of CmoCh04G015970 vs. TrEMBL
Match: A0A067FRN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042679mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-09
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 1 

Query: 14  EDDGYYAEIRKQIILLLTTYDDDED--VERPPKT---AAKRGAEQ-----SGRRHPQSER 73
           EDD +YAE+R+QI+LL    D DED  +ER   +   A KRG+       S    P S  
Sbjct: 16  EDDVFYAELRRQILLLTADEDGDEDHFLERKHSSSISAGKRGSSHGLTSFSSALQPGSYF 75

Query: 74  NLSWCLNGNDLE-GPVWHVNSWENGNGTGVFIPQAVKYKRYS 105
           N  WC + N+    P W VN W  GNGTGVFIP  VK +R++
Sbjct: 76  N--WCESENNSNTAPTWLVNLWRYGNGTGVFIPHIVKSRRHN 115

[Close]
BLAST of CmoCh04G015970 vs. TrEMBL
Match: A0A0D2TXF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G081200 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 41/104 (39.42%), Postives = 48/104 (46.15%), Query Frame = 1 

Query: 14  EDDGYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRRHPQSERNLSWCLNGND 73
           EDDG+YAEIR+QI+LL    DDD        +   RGA    R    S    SWC     
Sbjct: 8   EDDGFYAEIRRQILLLTAEDDDDYQQTETNNSPPTRGAANLCRLRHAS--YFSWCAGEKT 67

Query: 74  LEGPVWHVNSWENGN----GTGVFIPQAVKYKRYSIFRRMRKHE 114
              P W  N W N N    GTGVFIP     +R+    RM K +
Sbjct: 68  SSAPTWLSNLWRNDNSNRTGTGVFIPHINNSRRWRRPSRMSKRK 109

[Close]
BLAST of CmoCh04G015970 vs. TrEMBL
Match: A0A061EB05_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 1 

Query: 13  EEDDGYYAEIRKQIILLLTTYDDDEDVERP----PKTAAKRGAEQSGRRHPQSERN---- 72
           +EDD +YA+IR++I+LL  T DDDED +      P    K G+ ++      S +     
Sbjct: 17  DEDDVFYADIRRRILLL--TADDDEDCQETKSFHPVCNGKPGSNRAVGNLSSSLQYGGYF 76

Query: 73  LSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRKHE 114
            SW     D   P W  N W NGNGTGVFIP  VK +R+    RM K +
Sbjct: 77  SSWESENTD-SVPTWLANLWRNGNGTGVFIPHIVKSRRHHRPGRMNKRK 122

[Close]
BLAST of CmoCh04G015970 vs. TrEMBL
Match: B9ST25_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 42/96 (43.75%), Postives = 53/96 (55.21%), Query Frame = 1 

Query: 13  EEDDGYYAEIRKQIILLLTTYDDDEDVERPPKT--AAKRGAEQSGRRHP---QSERNLSW 72
           E +D +YAE+R+QI LLLT   DD D  R  K+  + K G+ +     P   Q E   +W
Sbjct: 28  EAEDVFYAELRRQI-LLLTADSDDFDKIRCEKSLPSCKPGSNRLTGSFPVRLQPESYFNW 87

Query: 73  CLNGNDLEG-PVWHVNSWENGNGTGVFIPQAVKYKR 103
               N  +  P W VN W NGNGTGVFIP+A K  R
Sbjct: 88  WERQNTNDSVPTWLVNLWRNGNGTGVFIPRAAKAGR 122

[Close]
BLAST of CmoCh04G015970 vs. NCBI nr
Match: gi|778705924|ref|XP_011655764.1| (PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 4.2e-44
Identity = 92/120 (76.67%), Postives = 102/120 (85.00%), Query Frame = 1 

Query: 1   MDFKAELNTQVAEEDDGYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRR-HP 60
           MDFKAELNTQ+ EE+D YYAEIRKQI LLLT YDDD++VE+ PKTAAK GAE   R   P
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QSERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRKHERKEKHR 120
           Q ERN+S C NGND + PVWHVNSWENGNGTGVFIPQAVKYK+Y +FRR+RKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

[Close]
BLAST of CmoCh04G015970 vs. NCBI nr
Match: gi|659091473|ref|XP_008446569.1| (PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 93/132 (70.45%), Postives = 104/132 (78.79%), Query Frame = 1 

Query: 1   MDFKAELNTQVAEEDDGYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGR-RHP 60
           MDFKAELNTQ+ EE+D YYAEIRKQIILLLT YDDDE  E+PP+TAAK GA+   R R P
Sbjct: 58  MDFKAELNTQITEEEDCYYAEIRKQIILLLTAYDDDE--EQPPRTAAKPGAKVQQRDRWP 117

Query: 61  QSERNLSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKRYSIFRRMRKHERKEKHR 120
           Q + NLS C NG D E PVWHVNSWENGNGTGVFIPQAVKYK+Y + RR+RKHERKEKHR
Sbjct: 118 QIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCVLRRLRKHERKEKHR 177

Query: 121 LNRQQDQGSSVF 132
               + +  S F
Sbjct: 178 QKNIETEDHSCF 187

[Close]
BLAST of CmoCh04G015970 vs. NCBI nr
Match: gi|641851173|gb|KDO70044.1| (hypothetical protein CISIN_1g042679mg [Citrus sinensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 1 

Query: 14  EDDGYYAEIRKQIILLLTTYDDDED--VERPPKT---AAKRGAEQ-----SGRRHPQSER 73
           EDD +YAE+R+QI+LL    D DED  +ER   +   A KRG+       S    P S  
Sbjct: 16  EDDVFYAELRRQILLLTADEDGDEDHFLERKHSSSISAGKRGSSHGLTSFSSALQPGSYF 75

Query: 74  NLSWCLNGNDLE-GPVWHVNSWENGNGTGVFIPQAVKYKRYS 105
           N  WC + N+    P W VN W  GNGTGVFIP  VK +R++
Sbjct: 76  N--WCESENNSNTAPTWLVNLWRYGNGTGVFIPHIVKSRRHN 115

[Close]
BLAST of CmoCh04G015970 vs. NCBI nr
Match: gi|763813261|gb|KJB80113.1| (hypothetical protein B456_013G081200 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 41/104 (39.42%), Postives = 48/104 (46.15%), Query Frame = 1 

Query: 14  EDDGYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRRHPQSERNLSWCLNGND 73
           EDDG+YAEIR+QI+LL    DDD        +   RGA    R    S    SWC     
Sbjct: 8   EDDGFYAEIRRQILLLTAEDDDDYQQTETNNSPPTRGAANLCRLRHAS--YFSWCAGEKT 67

Query: 74  LEGPVWHVNSWENGN----GTGVFIPQAVKYKRYSIFRRMRKHE 114
              P W  N W N N    GTGVFIP     +R+    RM K +
Sbjct: 68  SSAPTWLSNLWRNDNSNRTGTGVFIPHINNSRRWRRPSRMSKRK 109

[Close]
BLAST of CmoCh04G015970 vs. NCBI nr
Match: gi|1021514731|ref|XP_016200822.1| (PREDICTED: uncharacterized protein LOC107641992 [Arachis ipaensis])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 41/103 (39.81%), Postives = 55/103 (53.40%), Query Frame = 1 

Query: 7   LNTQVAEEDDGYYAEIRKQIILLLTTYDDDEDVERP----PKTAAKRGAEQSGRRHPQSE 66
           +  Q+  +DD +YAEIRKQI+LL  T +D+ED+           AK G+ +S      S+
Sbjct: 1   MEIQLQFDDDTFYAEIRKQILLL--TSEDNEDLAETRLFGSVGVAKGGSTRSVYYKSDSQ 60

Query: 67  RN---LSWCLNGNDLEGPVWHVNSWENGNGTGVFIPQAVKYKR 103
           R     SW         P W VN W++  GTGVFIPQAV Y +
Sbjct: 61  RPSNFCSWETGSTAGSPPEWVVNLWKSRKGTGVFIPQAVAYSK 101

The following BLAST results are available for this feature:
BLAST of CmoCh04G015970 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT55_CUCSA2.9e-4476.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1[more]
A0A067FRN8_CITSI8.9e-0944.12Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042679mg PE=4 SV=1[more]
A0A0D2TXF6_GOSRA1.7e-0739.42Uncharacterized protein OS=Gossypium raimondii GN=B456_013G081200 PE=4 SV=1[more]
A0A061EB05_THECC1.1e-0639.45Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1[more]
B9ST25_RICCO1.1e-0643.75Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1[more]
BLAST of CmoCh04G015970 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778705924|ref|XP_011655764.1|4.2e-4476.67PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus][more]
gi|659091473|ref|XP_008446569.1|1.3e-4270.45PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo][more]
gi|641851173|gb|KDO70044.1|1.3e-0844.12hypothetical protein CISIN_1g042679mg [Citrus sinensis][more]
gi|763813261|gb|KJB80113.1|2.4e-0739.42hypothetical protein B456_013G081200 [Gossypium raimondii][more]
gi|1021514731|ref|XP_016200822.1|1.6e-0639.81PREDICTED: uncharacterized protein LOC107641992 [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015970.1CmoCh04G015970.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34956FAMILY NOT NAMEDcoord: 5..109
score: 1.7
NoneNo IPR availablePANTHERPTHR34956:SF1SUBFAMILY NOT NAMEDcoord: 5..109
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G015970Cucsa.283780Cucumber (Gy14) v1cgycmoB0799
CmoCh04G015970CmaCh04G015270Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G015970Cla020376Watermelon (97103) v1cmowmB693
CmoCh04G015970Csa5G608470Cucumber (Chinese Long) v2cmocuB721
CmoCh04G015970MELO3C012226Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015970ClCG05G022920Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015970CSPI05G25060Wild cucumber (PI 183967)cmocpiB729
CmoCh04G015970Lsi04G002780Bottle gourd (USVL1VR-Ls)cmolsiB675
CmoCh04G015970Cp4.1LG01g13430Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015970MELO3C012226.2Melon (DHL92) v3.6.1cmomedB740
CmoCh04G015970CsaV3_5G034090Cucumber (Chinese Long) v3cmocucB0853
CmoCh04G015970Cla97C05G104800Watermelon (97103) v2cmowmbB729
CmoCh04G015970Bhi07G001127Wax gourdcmowgoB0908
CmoCh04G015970CsGy5G024540Cucumber (Gy14) v2cgybcmoB632
CmoCh04G015970Carg01825Silver-seed gourdcarcmoB1138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015970Watermelon (97103) v1cmowmB703
CmoCh04G015970Cucurbita pepo (Zucchini)cmocpeB649
CmoCh04G015970Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015970Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015970Bottle gourd (USVL1VR-Ls)cmolsiB686
CmoCh04G015970Cucumber (Gy14) v2cgybcmoB123
CmoCh04G015970Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015970Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015970Melon (DHL92) v3.6.1cmomedB752
CmoCh04G015970Silver-seed gourdcarcmoB0814
CmoCh04G015970Silver-seed gourdcarcmoB1396
CmoCh04G015970Silver-seed gourdcarcmoB1397
CmoCh04G015970Cucumber (Chinese Long) v3cmocucB0803
CmoCh04G015970Watermelon (97103) v2cmowmbB738
CmoCh04G015970Watermelon (97103) v2cmowmbB745
CmoCh04G015970Wax gourdcmowgoB0847
CmoCh04G015970Wax gourdcmowgoB0892
CmoCh04G015970Cucurbita moschata (Rifu)cmocmoB126
CmoCh04G015970Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015970Cucurbita moschata (Rifu)cmocmoB342
CmoCh04G015970Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015970Cucurbita maxima (Rimu)cmacmoB424
CmoCh04G015970Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015970Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015970Melon (DHL92) v3.5.1cmomeB650
CmoCh04G015970Watermelon (Charleston Gray)cmowcgB663