Csa5G608470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G608470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 23475735 .. 23476475 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGTGTAAACATAACACTGAAATGAATCCCCCTTTTTCTCTATGTATCTGTTCACAATTCTGTTTCCCTGCAGAGTACTTCATTGGGTCTCATTTCACTATAAAATTCCAAATACAGTCTAGTCTAACTTCACCATAACCATGGATTTCAAAGCAGAGCTCAACACACAAATAACAGAAGAAGAAGATTGTTACTATGCTGAGATTAGGAAGCAGATCAGTCTACTTTTGACAGCATATGATGATGACGATGAGGTCGAACAGCTTCCCAAAACTGCAGCCAAACCAGGAGCAGAAGTTCGACAAAGAGATTGTTGGCCACAGCTAGAGAGAAATATGAGTTTGTGCCCAAATGGGAATGATTTTGATGAACCTGTTTGGCATGTAAATTCATGGGAGAATGGGAATGGAACGGGGGTTTTCATTCCTCAAGCAGTCAAATACAAAAAATATTGTGTTTTCAGTATGTTCCTATTTTAACTTTGGAGTTTCGTAATTATAAAGGTAATATTTAACATAACATAACATCACCTTATGTTTTGTCTTGCAGGAAGGTTGAGAAAGCATGAGAGAAAAGAGAAACACAGACAAAAGAACATCGAAACCGAGGACCATCCTTGTTTTTAAAAGGATAAATTGCAAAAAAATACCCCTCAAGTTTGTCCATGGTATAAAAAACATCCCTTTTCAAAAGCTACAACAATACCTTCTAACCTTTCATAATATGAATCCTACGAAAATT

mRNA sequence

ATGGATTTCAAAGCAGAGCTCAACACACAAATAACAGAAGAAGAAGATTGTTACTATGCTGAGATTAGGAAGCAGATCAGTCTACTTTTGACAGCATATGATGATGACGATGAGGTCGAACAGCTTCCCAAAACTGCAGCCAAACCAGGAGCAGAAGTTCGACAAAGAGATTGTTGGCCACAGCTAGAGAGAAATATGAGTTTGTGCCCAAATGGGAATGATTTTGATGAACCTGTTTGGCATGTAAATTCATGGGAGAATGGGAATGGAACGGGGGTTTTCATTCCTCAAGCAGTCAAATACAAAAAATATTGTGTTTTCAGAAGGTTGAGAAAGCATGAGAGAAAAGAGAAACACAGACAAAAGAACATCGAAACCGAGGACCATCCTTGTTTTTAA

Coding sequence (CDS)

ATGGATTTCAAAGCAGAGCTCAACACACAAATAACAGAAGAAGAAGATTGTTACTATGCTGAGATTAGGAAGCAGATCAGTCTACTTTTGACAGCATATGATGATGACGATGAGGTCGAACAGCTTCCCAAAACTGCAGCCAAACCAGGAGCAGAAGTTCGACAAAGAGATTGTTGGCCACAGCTAGAGAGAAATATGAGTTTGTGCCCAAATGGGAATGATTTTGATGAACCTGTTTGGCATGTAAATTCATGGGAGAATGGGAATGGAACGGGGGTTTTCATTCCTCAAGCAGTCAAATACAAAAAATATTGTGTTTTCAGAAGGTTGAGAAAGCATGAGAGAAAAGAGAAACACAGACAAAAGAACATCGAAACCGAGGACCATCCTTGTTTTTAA

Protein sequence

MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWPQLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHRQKNIETEDHPCF*

Homology

[Close]

BLAST of Csa5G608470 vs. TrEMBL
Match: A0A0A0KT55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.6e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60
           MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120
           QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

Query: 121 QKNIETEDHPCF 133
           QKNIETEDHPCF
Sbjct: 121 QKNIETEDHPCF 132

[Close]

BLAST of Csa5G608470 vs. TrEMBL
Match: B9ST25_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-07
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 13  EEEDCYYAEIRKQISLLLTAYDDDDEV---EQLPKTAAKPGAEVRQRDCWP---QLERNM 72
           E ED +YAE+R+QI LL    DD D++   + LP  + KPG+  R    +P   Q E   
Sbjct: 28  EAEDVFYAELRRQILLLTADSDDFDKIRCEKSLP--SCKPGSN-RLTGSFPVRLQPESYF 87

Query: 73  SLCPNGNDFDE-PVWHVNSWENGNGTGVFIPQAVK 101
           +     N  D  P W VN W NGNGTGVFIP+A K
Sbjct: 88  NWWERQNTNDSVPTWLVNLWRNGNGTGVFIPRAAK 119

[Close]

BLAST of Csa5G608470 vs. TrEMBL
Match: A0A061EB05_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 13  EEEDCYYAEIRKQISLLLTAYDDDDEVEQL---PKTAAKPGAEVRQRDCWPQLERN--MS 72
           +E+D +YA+IR++I LLLTA DD+D  E     P    KPG+     +    L+     S
Sbjct: 17  DEDDVFYADIRRRI-LLLTADDDEDCQETKSFHPVCNGKPGSNRAVGNLSSSLQYGGYFS 76

Query: 73  LCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHE 115
              + N    P W  N W NGNGTGVFIP  VK +++    R+ K +
Sbjct: 77  SWESENTDSVPTWLANLWRNGNGTGVFIPHIVKSRRHHRPGRMNKRK 122

[Close]

BLAST of Csa5G608470 vs. TrEMBL
Match: A0A0B2PD60_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035782 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-07
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1


Query: 14  EEDCYYAEIRKQISLLLTAYDDDDEVEQ-----LPKTAAKPGAEVRQRDCWPQLERNMSL 73
           EED +YAEIR+QI LLLT+ D++D +E      +  T           +C      N SL
Sbjct: 16  EEDTFYAEIRRQI-LLLTSEDNEDLLETRSFNPINVTNGGSNRSAYSFNCASPSASNFSL 75

Query: 74  CPNGNDFDEPVWHVNSWENGNGTGVFIPQ 98
               +    P+W VN W+NG GTGVFIPQ
Sbjct: 76  WERHSSGSPPLWLVNLWKNGKGTGVFIPQ 103

[Close]

BLAST of Csa5G608470 vs. TrEMBL
Match: I1LEY3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G276000 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-07
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1


Query: 14  EEDCYYAEIRKQISLLLTAYDDDDEVEQ-----LPKTAAKPGAEVRQRDCWPQLERNMSL 73
           EED +YAEIR+QI LLLT+ D++D +E      +  T           +C      N SL
Sbjct: 16  EEDTFYAEIRRQI-LLLTSEDNEDLLETRSFNPINVTNGGSNRSAYSFNCASPSASNFSL 75

Query: 74  CPNGNDFDEPVWHVNSWENGNGTGVFIPQ 98
               +    P+W VN W+NG GTGVFIPQ
Sbjct: 76  WERHSSGSPPLWLVNLWKNGKGTGVFIPQ 103

[Close]

BLAST of Csa5G608470 vs. NCBI nr
Match: gi|778705924|ref|XP_011655764.1| (PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.3e-74
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 1


Query: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60
           MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120
           QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

Query: 121 QKNIETEDHPCF 133
           QKNIETEDHPCF
Sbjct: 121 QKNIETEDHPCF 132

[Close]

BLAST of Csa5G608470 vs. NCBI nr
Match: gi|659091473|ref|XP_008446569.1| (PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 1.5e-62
Identity = 115/132 (87.12%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60
           MDFKAELNTQITEEEDCYYAEIRKQI LLLTAYDDD+E  Q P+TAAKPGA+V+QRD WP
Sbjct: 58  MDFKAELNTQITEEEDCYYAEIRKQIILLLTAYDDDEE--QPPRTAAKPGAKVQQRDRWP 117

Query: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120
           Q++ N+SLCPNG DF+EPVWHVNSWENGNGTGVFIPQAVKYKKYCV RRLRKHERKEKHR
Sbjct: 118 QIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCVLRRLRKHERKEKHR 177

Query: 121 QKNIETEDHPCF 133
           QKNIETEDH CF
Sbjct: 178 QKNIETEDHSCF 187

[Close]

BLAST of Csa5G608470 vs. NCBI nr
Match: gi|747049550|ref|XP_011070825.1| (PREDICTED: uncharacterized protein LOC105156403 [Sesamum indicum])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = 1


Query: 11  ITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPG-----AEVRQRDCWPQLERN 70
           + E++D +Y E+RKQ+ L LTA DD+D  E       K G       VR   C+     N
Sbjct: 38  LEEDDDVFYDELRKQV-LQLTAEDDEDAYENNILQGRKQGLHTGPCSVRLPRCYYNWPGN 97

Query: 71  MSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHRQKNIE 126
              C        P W +N W +GNGTGVFIPQ V+ K      R R+ + ++    K +E
Sbjct: 98  KEDCAAA-----PAWMLNLWRSGNGTGVFIPQTVQRK-----NRSRRKKNEKGRTYKRVE 146

[Close]

BLAST of Csa5G608470 vs. NCBI nr
Match: gi|1000946622|ref|XP_015580855.1| (PREDICTED: uncharacterized protein LOC8269713 [Ricinus communis])

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 13  EEEDCYYAEIRKQISLLLTAYDDDDEV---EQLPKTAAKPGAEVRQRDCWP---QLERNM 72
           E ED +YAE+R+QI LL    DD D++   + LP  + KPG+  R    +P   Q E   
Sbjct: 28  EAEDVFYAELRRQILLLTADSDDFDKIRCEKSLP--SCKPGSN-RLTGSFPVRLQPESYF 87

Query: 73  SLCPNGNDFDE-PVWHVNSWENGNGTGVFIPQAVK 101
           +     N  D  P W VN W NGNGTGVFIP+A K
Sbjct: 88  NWWERQNTNDSVPTWLVNLWRNGNGTGVFIPRAAK 119

[Close]

BLAST of Csa5G608470 vs. NCBI nr
Match: gi|223531423|gb|EEF33257.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 13  EEEDCYYAEIRKQISLLLTAYDDDDEV---EQLPKTAAKPGAEVRQRDCWP---QLERNM 72
           E ED +YAE+R+QI LL    DD D++   + LP  + KPG+  R    +P   Q E   
Sbjct: 28  EAEDVFYAELRRQILLLTADSDDFDKIRCEKSLP--SCKPGSN-RLTGSFPVRLQPESYF 87

Query: 73  SLCPNGNDFDE-PVWHVNSWENGNGTGVFIPQAVK 101
           +     N  D  P W VN W NGNGTGVFIP+A K
Sbjct: 88  NWWERQNTNDSVPTWLVNLWRNGNGTGVFIPRAAK 119

The following BLAST results are available for this feature:

BLAST of Csa5G608470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT55_CUCSA	1.6e-74	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1	[more]
B9ST25_RICCO	2.8e-07	44.21	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1	[more]
A0A061EB05_THECC	3.7e-07	38.32	Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1	[more]
A0A0B2PD60_GLYSO	6.3e-07	41.57	Uncharacterized protein OS=Glycine soja GN=glysoja_035782 PE=4 SV=1	[more]
I1LEY3_SOYBN	6.3e-07	41.57	Uncharacterized protein OS=Glycine max GN=GLYMA_10G276000 PE=4 SV=1	[more]

BLAST of Csa5G608470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705924\|ref\|XP_011655764.1\|	2.3e-74	100.00	PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus]	[more]
gi\|659091473\|ref\|XP_008446569.1\|	1.5e-62	87.12	PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo]	[more]
gi\|747049550\|ref\|XP_011070825.1\|	2.4e-07	35.00	PREDICTED: uncharacterized protein LOC105156403 [Sesamum indicum]	[more]
gi\|1000946622\|ref\|XP_015580855.1\|	4.1e-07	44.21	PREDICTED: uncharacterized protein LOC8269713 [Ricinus communis]	[more]
gi\|223531423\|gb\|EEF33257.1\|	4.1e-07	44.21	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU147006	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G608470.1	Csa5G608470.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU147006	CU147006	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34956	FAMILY NOT NAMED	coord: 5..104 score: 1.5
None	No IPR available	PANTHER	PTHR34956:SF1	SUBFAMILY NOT NAMED	coord: 5..104 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G608470	Cla020376	Watermelon (97103) v1	cuwmB401
Csa5G608470	MELO3C012226	Melon (DHL92) v3.5.1	cumeB377
Csa5G608470	ClCG05G022920	Watermelon (Charleston Gray)	cuwcgB394
Csa5G608470	Lsi04G002780	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G608470	MELO3C012226.2	Melon (DHL92) v3.6.1	cumedB359
Csa5G608470	Cla97C05G104800	Watermelon (97103) v2	cuwmbB383
Csa5G608470	Bhi07G001127	Wax gourd	cuwgoB512
Csa5G608470	CSPI05G25060	Wild cucumber (PI 183967)	cpicuB239
Csa5G608470	Cucsa.283780	Cucumber (Gy14) v1	cgycuB410
Csa5G608470	CmaCh04G015270	Cucurbita maxima (Rimu)	cmacuB730
Csa5G608470	CmoCh04G015970	Cucurbita moschata (Rifu)	cmocuB721
Csa5G608470	Cp4.1LG01g13430	Cucurbita pepo (Zucchini)	cpecuB422
Csa5G608470	CsGy5G024540	Cucumber (Gy14) v2	cgybcuB223
Csa5G608470	Carg01825	Silver-seed gourd	carcuB0862

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G608470	Silver-seed gourd	carcuB0496
Csa5G608470	Silver-seed gourd	carcuB0626
Csa5G608470	Silver-seed gourd	carcuB0857
Csa5G608470	Silver-seed gourd	carcuB1057
Csa5G608470	Watermelon (97103) v2	cuwmbB377
Csa5G608470	Watermelon (97103) v2	cuwmbB390
Csa5G608470	Watermelon (97103) v2	cuwmbB401
Csa5G608470	Wax gourd	cuwgoB482
Csa5G608470	Wax gourd	cuwgoB495
Csa5G608470	Cucumber (Chinese Long) v2	cucuB031
Csa5G608470	Cucumber (Chinese Long) v2	cucuB030
Csa5G608470	Cucumber (Gy14) v1	cgycuB304
Csa5G608470	Cucurbita maxima (Rimu)	cmacuB135
Csa5G608470	Cucurbita maxima (Rimu)	cmacuB417
Csa5G608470	Cucurbita maxima (Rimu)	cmacuB764
Csa5G608470	Cucurbita moschata (Rifu)	cmocuB406
Csa5G608470	Cucurbita moschata (Rifu)	cmocuB755
Csa5G608470	Melon (DHL92) v3.5.1	cumeB392
Csa5G608470	Watermelon (Charleston Gray)	cuwcgB376
Csa5G608470	Watermelon (Charleston Gray)	cuwcgB400
Csa5G608470	Watermelon (Charleston Gray)	cuwcgB412
Csa5G608470	Watermelon (97103) v1	cuwmB377
Csa5G608470	Watermelon (97103) v1	cuwmB425
Csa5G608470	Watermelon (97103) v1	cuwmB441
Csa5G608470	Cucurbita pepo (Zucchini)	cpecuB041
Csa5G608470	Cucurbita pepo (Zucchini)	cpecuB434
Csa5G608470	Cucurbita pepo (Zucchini)	cpecuB682
Csa5G608470	Bottle gourd (USVL1VR-Ls)	culsiB346
Csa5G608470	Bottle gourd (USVL1VR-Ls)	culsiB383
Csa5G608470	Cucumber (Gy14) v2	cgybcuB033
Csa5G608470	Melon (DHL92) v3.6.1	cumedB335
Csa5G608470	Melon (DHL92) v3.6.1	cumedB375
Csa5G608470	Melon (DHL92) v3.6.1	cumedB379