CmaCh04G015270.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G015270.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 7732208 .. 7732691 (-)
Sequence length	402

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCAAAGCAGAGCTCAACACACAAGTAGCAGAAGAAGATGATAGTTACTATGCTGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTCGAACGACCTCCCAAAACTGCAGCAAAACGAGGTGCAGAACAAAGCGGTCGTTGTCACCCACAGGCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGAACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCCAATTCAAAAGATACAGTATTTTCAGTATGTTCCTGTCTTGACTTTCGAGTTTCATAAGCACAAGGCAATATTTAACATAACATCACTTCTTGATTTTGTGTTGCAGGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAAGACCAAGGATCATCCATGTTTTCAGGAGGCTAA

mRNA sequence

ATGGATTTCAAAGCAGAGCTCAACACACAAGTAGCAGAAGAAGATGATAGTTACTATGCTGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTCGAACGACCTCCCAAAACTGCAGCAAAACGAGGTGCAGAACAAAGCGGTCGTTGTCACCCACAGGCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGAACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCCAATTCAAAAGATACAGTATTTTCAGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAAGACCAAGGATCATCCATGTTTTCAGGAGGCTAA

Coding sequence (CDS)

ATGGATTTCAAAGCAGAGCTCAACACACAAGTAGCAGAAGAAGATGATAGTTACTATGCTGAGATTAGGAAACAAATCATTCTACTTTTGACAACATACGATGACGACGAAGACGTCGAACGACCTCCCAAAACTGCAGCAAAACGAGGTGCAGAACAAAGCGGTCGTTGTCACCCACAGGCAGAGAGAAACTTGAGTTGGTGTCTAAATGGGAATGATTTAGAAGAACCTGTTTGGCATGTCAATTCATGGGAGAATGGGAATGGAACAGGAGTTTTCATCCCTCAAGCAGTCCAATTCAAAAGATACAGTATTTTCAGAAGGATGAGAAAGCATGAGAGAAAAGAAAAACACAGACTAAACAGACAAGACCAAGGATCATCCATGTTTTCAGGAGGCTAA

Protein sequence

MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHPQAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHRLNRQDQGSSMFSGG

Homology

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BLAST of CmaCh04G015270.1 vs. TrEMBL
Match: A0A0A0KT55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-46
Identity = 92/120 (76.67%), Postives = 104/120 (86.67%), Query Frame = 1


Query: 1   MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGR-CHP 60
           MDFKAELNTQ+ EE+D YYAEIRKQI LLLT YDDD++VE+ PKTAAK GAE   R C P
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHR 120
           Q ERN+S C NGND +EPVWHVNSWENGNGTGVFIPQAV++K+Y +FRR+RKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

[Close]

BLAST of CmaCh04G015270.1 vs. TrEMBL
Match: A0A067FRN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042679mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHP--------QAERNL 73
           EDD +YAE+R+QI+LL    D DED     K ++   A + G  H         Q     
Sbjct: 16  EDDVFYAELRRQILLLTADEDGDEDHFLERKHSSSISAGKRGSSHGLTSFSSALQPGSYF 75

Query: 74  SWCLNGNDLEE-PVWHVNSWENGNGTGVFIPQAVQFKRYS 105
           +WC + N+    P W VN W  GNGTGVFIP  V+ +R++
Sbjct: 76  NWCESENNSNTAPTWLVNLWRYGNGTGVFIPHIVKSRRHN 115

[Close]

BLAST of CmaCh04G015270.1 vs. TrEMBL
Match: A0A061EB05_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-07
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 1


Query: 13  EEDDSYYAEIRKQIILLLTTYDDDEDVERP----PKTAAKRGAEQS-GRCHPQAERN--- 72
           +EDD +YA+IR++I+LL  T DDDED +      P    K G+ ++ G      +     
Sbjct: 17  DEDDVFYADIRRRILLL--TADDDEDCQETKSFHPVCNGKPGSNRAVGNLSSSLQYGGYF 76

Query: 73  LSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHE 114
            SW     D   P W  N W NGNGTGVFIP  V+ +R+    RM K +
Sbjct: 77  SSWESENTD-SVPTWLANLWRNGNGTGVFIPHIVKSRRHHRPGRMNKRK 122

[Close]

BLAST of CmaCh04G015270.1 vs. TrEMBL
Match: B9ST25_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 13  EEDDSYYAEIRKQIILLLTTYDDDEDVERPPKT--AAKRGAEQSGRCHP---QAERNLSW 72
           E +D +YAE+R+QI LLLT   DD D  R  K+  + K G+ +     P   Q E   +W
Sbjct: 28  EAEDVFYAELRRQI-LLLTADSDDFDKIRCEKSLPSCKPGSNRLTGSFPVRLQPESYFNW 87

Query: 73  CLNGNDLEE-PVWHVNSWENGNGTGVFIPQAVQFKR 103
               N  +  P W VN W NGNGTGVFIP+A +  R
Sbjct: 88  WERQNTNDSVPTWLVNLWRNGNGTGVFIPRAAKAGR 122

[Close]

BLAST of CmaCh04G015270.1 vs. TrEMBL
Match: A0A0L9UTD4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g130400 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-06
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHPQAERNLSWCLNGND 73
           +DDS+YAEIR+ I L LT+ D+D  VE   K   + G   S R    A+ + SW    + 
Sbjct: 6   DDDSFYAEIRRHI-LQLTSEDEDLSVE---KAFGEGGVGGSTRPPALAKHSCSWETQSS- 65

Query: 74  LEEPVWHVNSWENGNGTGVFIPQAVQFKRY 104
              P   VN W++G GTGVFIP+AV  K+Y
Sbjct: 66  -RSPHLTVNLWKSGRGTGVFIPRAVTAKKY 89

[Close]

BLAST of CmaCh04G015270.1 vs. NCBI nr
Match: gi|778705924|ref|XP_011655764.1| (PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 5.8e-46
Identity = 92/120 (76.67%), Postives = 104/120 (86.67%), Query Frame = 1


Query: 1   MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGR-CHP 60
           MDFKAELNTQ+ EE+D YYAEIRKQI LLLT YDDD++VE+ PKTAAK GAE   R C P
Sbjct: 1   MDFKAELNTQITEEEDCYYAEIRKQISLLLTAYDDDDEVEQLPKTAAKPGAEVRQRDCWP 60

Query: 61  QAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHR 120
           Q ERN+S C NGND +EPVWHVNSWENGNGTGVFIPQAV++K+Y +FRR+RKHERKEKHR
Sbjct: 61  QLERNMSLCPNGNDFDEPVWHVNSWENGNGTGVFIPQAVKYKKYCVFRRLRKHERKEKHR 120

[Close]

BLAST of CmaCh04G015270.1 vs. NCBI nr
Match: gi|659091473|ref|XP_008446569.1| (PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 6.6e-42
Identity = 89/120 (74.17%), Postives = 100/120 (83.33%), Query Frame = 1


Query: 1   MDFKAELNTQVAEEDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCH-P 60
           MDFKAELNTQ+ EE+D YYAEIRKQIILLLT YDDDE  E+PP+TAAK GA+   R   P
Sbjct: 58  MDFKAELNTQITEEEDCYYAEIRKQIILLLTAYDDDE--EQPPRTAAKPGAKVQQRDRWP 117

Query: 61  QAERNLSWCLNGNDLEEPVWHVNSWENGNGTGVFIPQAVQFKRYSIFRRMRKHERKEKHR 120
           Q + NLS C NG D EEPVWHVNSWENGNGTGVFIPQAV++K+Y + RR+RKHERKEKHR
Sbjct: 118 QIKGNLSLCPNGKDFEEPVWHVNSWENGNGTGVFIPQAVKYKKYCVLRRLRKHERKEKHR 175

[Close]

BLAST of CmaCh04G015270.1 vs. NCBI nr
Match: gi|641851173|gb|KDO70044.1| (hypothetical protein CISIN_1g042679mg [Citrus sinensis])

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-08
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHP--------QAERNL 73
           EDD +YAE+R+QI+LL    D DED     K ++   A + G  H         Q     
Sbjct: 16  EDDVFYAELRRQILLLTADEDGDEDHFLERKHSSSISAGKRGSSHGLTSFSSALQPGSYF 75

Query: 74  SWCLNGNDLEE-PVWHVNSWENGNGTGVFIPQAVQFKRYS 105
           +WC + N+    P W VN W  GNGTGVFIP  V+ +R++
Sbjct: 76  NWCESENNSNTAPTWLVNLWRYGNGTGVFIPHIVKSRRHN 115

[Close]

BLAST of CmaCh04G015270.1 vs. NCBI nr
Match: gi|1009155409|ref|XP_015895698.1| (PREDICTED: uncharacterized protein LOC107429511 [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 49/121 (40.50%), Postives = 63/121 (52.07%), Query Frame = 1


Query: 13  EEDDSYYAEIRKQIILLLTTYDDDEDVERPPK-------------TAAKRGAEQS-GRCH 72
           EEDD +YAEIR+QI+LL  T DDDE+VE                 +A+K   + S GRC+
Sbjct: 34  EEDDIFYAEIRRQILLL--TADDDEEVEEEENFHESRNSIHPNSWSASKESLKGSKGRCY 93

Query: 73  P-QAERNLSWCLNGNDLEE--PVWHVNSWEN-GNGTGVFIPQAVQFKRYSIFRRMRKHER 116
           P +   N +   N     +  P W  N W+N GNGTGVFIPQ    KR    R+M +   
Sbjct: 94  PCEYNCNFNRWENKKVAADSIPNWLANLWKNNGNGTGVFIPQTNTSKRNQRLRKMNRERT 152

[Close]

BLAST of CmaCh04G015270.1 vs. NCBI nr
Match: gi|763813261|gb|KJB80113.1| (hypothetical protein B456_013G081200 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 39/104 (37.50%), Postives = 48/104 (46.15%), Query Frame = 1


Query: 14  EDDSYYAEIRKQIILLLTTYDDDEDVERPPKTAAKRGAEQSGRCHPQAERNLSWCLNGND 73
           EDD +YAEIR+QI+LL    DDD        +   RGA  +  C  +     SWC     
Sbjct: 8   EDDGFYAEIRRQILLLTAEDDDDYQQTETNNSPPTRGA--ANLCRLRHASYFSWCAGEKT 67

Query: 74  LEEPVWHVNSWENGN----GTGVFIPQAVQFKRYSIFRRMRKHE 114
              P W  N W N N    GTGVFIP     +R+    RM K +
Sbjct: 68  SSAPTWLSNLWRNDNSNRTGTGVFIPHINNSRRWRRPSRMSKRK 109

The following BLAST results are available for this feature:

BLAST of CmaCh04G015270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT55_CUCSA	4.0e-46	76.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608470 PE=4 SV=1	[more]
A0A067FRN8_CITSI	1.2e-08	39.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042679mg PE=4 SV=1	[more]
A0A061EB05_THECC	8.2e-07	38.53	Uncharacterized protein OS=Theobroma cacao GN=TCM_011844 PE=4 SV=1	[more]
B9ST25_RICCO	1.1e-06	42.71	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353710 PE=4 SV=1	[more]
A0A0L9UTD4_PHAAN	2.4e-06	43.33	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan06g130400 PE=4 SV=1	[more]

BLAST of CmaCh04G015270.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778705924\|ref\|XP_011655764.1\|	5.8e-46	76.67	PREDICTED: uncharacterized protein LOC105435583 [Cucumis sativus]	[more]
gi\|659091473\|ref\|XP_008446569.1\|	6.6e-42	74.17	PREDICTED: uncharacterized protein LOC103489264 [Cucumis melo]	[more]
gi\|641851173\|gb\|KDO70044.1\|	1.7e-08	39.00	hypothetical protein CISIN_1g042679mg [Citrus sinensis]	[more]
gi\|1009155409\|ref\|XP_015895698.1\|	1.8e-07	40.50	PREDICTED: uncharacterized protein LOC107429511 [Ziziphus jujuba]	[more]
gi\|763813261\|gb\|KJB80113.1\|	2.4e-07	37.50	hypothetical protein B456_013G081200 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh04G015270	CmaCh04G015270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh04G015270.1	CmaCh04G015270.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G015270.1.CDS.2	CmaCh04G015270.1.CDS.2	CDS
CmaCh04G015270.1.CDS.1	CmaCh04G015270.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh04G015270.1.exon.2	CmaCh04G015270.1.exon.2	exon
CmaCh04G015270.1.exon.1	CmaCh04G015270.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34956	FAMILY NOT NAMED	coord: 5..109 score: 8.8
None	No IPR available	PANTHER	PTHR34956:SF1	SUBFAMILY NOT NAMED	coord: 5..109 score: 8.8