CmaCh01G018850 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G018850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S9
LocationCma_Chr01 : 12354740 .. 12356679 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGTTAAATTACTTTTTTTATATGGAGTAAATTGAGAATTGGGCGTTATCAAGTATTCGAGGACAATATGGTCAATTCGCACACATTATCCCCTTTCACCTGCTCACCATTCTCTCTACATCCACCGCAGTTTCAATTTTTGGGAGAAGCTGGATAGAGCACGAGAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATACCAAACGCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACTCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGTCCTCTATCTTTCCCTTATTCGTGTACTTGCGTTTGGTTTCGTCCATTTTAGTTTTACTATTTTTGGCAGTGGATGTTCTTTGGACGATTTAGGGTTGTTGTTTCTTCTGCTGGATTCGACTAGGTTCGTTTAATGGTAATGCGAATGTTTTTTTTTGGATTAAACCGAAGATTGTAATTATAGGATCGTGATTTCTGTCTTTGATGTGCAAATTCTTGATCCATTTAGAGATGGAAGTGATTATTCAGTGTCTTTTCACTGTCTTTATAATTGATCTGCAGCAATTATTGTATTGAATTGAGATTGTGGAATAAACTTAGAACAACATTATCTACATTCTGGAGCATGCAGGTCTCTTAACGAGTAATTAAATTTAAGCTTTCGCTTCTTCATCTCATGTGTTGAACATAGTTTAGATTCCATTGCTTGTTGCCAAATTCGAAGGGATTGTGGAATAAGTGTTTTCATCAATCACAAGTTGGGATAAAAGATTGCTGCGATTGTATCCATGTGTTTGAGTTTGAGTTTCCAGTGGAATAGTTCTTAGTGCTAAAAGGCATGTCTATTAGGGGGATCGAGTAGTTCATTTATTCTTTCTCAGTGGATTTGGGAGTGAAAATGTGCTTTTGTTCTTCCACTTCCATCACATGTGGGAATCTTTACTTTCTGATGATGTTAGATCACATTGCAAATCCTTAGTTTGTCAGTGTTCATCTACATCTGTTCTTCAAGATGTTAAGATATTGAGTAAATTTAGTGAACAAGTGTGTTTCATTTCTTGTTAGGATGCCATTTTGCCTTGAATGTTTATTGGGTTTTCCTGGTATTGATGCTTGGATAACCCCATTCAAATTATGAGTGTGGTTTAAGTAGAGAGAGTTGTACTCACCTCTGGGTTGGAATATGCAATGTGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAGGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGTCAGGCTCAGGCGATCTCCCTTGGCATTGCTCGCGCTCTGCTAAAGGTGAGTGCTGATCACAGACCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACCCTCTTTTCCTTATTTGTACAACCCAGATGTTATTTTGTACTTTCTTTCCTCTCTAATCTAGTGTTACCTTAAAATTAAAATATTTCTCCTTATGAGCTCTAAGCTAGAACGAGGATATGTATTAAAAACGCAACCCATAATTGATCATCATAACTTTTTTTGAACGTATTTTTTGTCCATATATTTTACCTTTTGAATACTCC

mRNA sequence

TTTTGTTAAATTACTTTTTTTATATGGAGTAAATTGAGAATTGGGCGTTATCAAGTATTCGAGGACAATATGGTCAATTCGCACACATTATCCCCTTTCACCTGCTCACCATTCTCTCTACATCCACCGCAGTTTCAATTTTTGGGAGAAGCTGGATAGAGCACGAGAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATACCAAACGCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACTCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAGGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGTCAGGCTCAGGCGATCTCCCTTGGCATTGCTCGCGCTCTGCTAAAGGTGAGTGCTGATCACAGACCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACCCTCTTTTCCTTATTTGTACAACCCAGATGTTATTTTGTACTTTCTTTCCTCTCTAATCTAGTGTTACCTTAAAATTAAAATATTTCTCCTTATGAGCTCTAAGCTAGAACGAGGATATGTATTAAAAACGCAACCCATAATTGATCATCATAACTTTTTTTGAACGTATTTTTTGTCCATATATTTTACCTTTTGAATACTCC

Coding sequence (CDS)

ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATACCAAACGCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACTCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAGGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGTCAGGCTCAGGCGATCTCCCTTGGCATTGCTCGCGCTCTGCTAAAGGTGAGTGCTGATCACAGACCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA

Protein sequence

MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR
Homology
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BLAST of CmaCh01G018850 vs. Swiss-Prot
Match: RR9_ARATH (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.8e-78
Identity = 160/206 (77.67%), Postives = 178/206 (86.41%), Query Frame = 1 

Query: 4   SVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN +SFPR+ S+    +KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHR PLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

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BLAST of CmaCh01G018850 vs. Swiss-Prot
Match: RR9_SPIOL (30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-70
Identity = 143/196 (72.96%), Postives = 165/196 (84.18%), Query Frame = 1 

Query: 13  SSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSA----VETAELKNYVKS 72
           +SLSF+S ++  P  L   R+K   +S+     PLV++A++ +A     ETA+L+ +VKS
Sbjct: 2   ASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEVAETADLEKFVKS 61

Query: 73  RLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLT 132
           RLPGGFAAQT+IGTGRRK A+ARVVLQEGTGK IINYRDAKEYLQGNPLWLQYVK PL T
Sbjct: 62  RLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLAT 121

Query: 133 LGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERK 192
           LGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVSA HR PLK+EGLLTRDSR+VERK
Sbjct: 122 LGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERK 181

Query: 193 KAGLKKARKAPQFSKR 205
           K GLKKARKAPQFSKR
Sbjct: 182 KPGLKKARKAPQFSKR 197

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BLAST of CmaCh01G018850 vs. Swiss-Prot
Match: RS9_THEEB (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.4e-36
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1 

Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 133 QYSKR 137

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BLAST of CmaCh01G018850 vs. Swiss-Prot
Match: RR9_MESVI (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-35
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1 

Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 200 QFSKR 205
           QFSKR
Sbjct: 133 QFSKR 137

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BLAST of CmaCh01G018850 vs. Swiss-Prot
Match: RS9_NOSP7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-35
Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 1 

Query: 81  GTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVK 140
           GTGRRK+AVARV L  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 141 AEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
           AEGGGL+GQA ++ LG+ARAL ++  D+RPPLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 201 FSKR 205
           +SKR
Sbjct: 135 YSKR 138

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BLAST of CmaCh01G018850 vs. TrEMBL
Match: A0A0A0LDS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854240 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.2e-86
Identity = 179/204 (87.75%), Postives = 191/204 (93.63%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P+ALSFPRSKSL+IS S S S LVV+ASA + VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CmaCh01G018850 vs. TrEMBL
Match: A0A0B2PTZ1_GLYSO (30S ribosomal protein S9, chloroplastic OS=Glycine soja GN=glysoja_008704 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.5e-79
Identity = 167/207 (80.68%), Postives = 185/207 (89.37%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHS---KSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN LSF R++SL +S S   K+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRAPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

[Close]
BLAST of CmaCh01G018850 vs. TrEMBL
Match: C6SXF0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G247300 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 167/207 (80.68%), Postives = 185/207 (89.37%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHS---KSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN LSF R++SL +S S   K+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

[Close]
BLAST of CmaCh01G018850 vs. TrEMBL
Match: A5BPF9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11750 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-79
Identity = 170/209 (81.34%), Postives = 181/209 (86.60%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSA---- 60
           MA S+SSL  SLSSLSFSS +SQ P++LSF RS SL ISH    S L V ASA +     
Sbjct: 1   MAISMSSLTSSLSSLSFSSHISQRPSSLSFVRSNSLSISHLTKTSSLAVVASAAAVASPL 60

Query: 61  -VETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGN 120
            +ETA+LK YVKSRLPGGFAAQT+IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGN
Sbjct: 61  ELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 120

Query: 121 PLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKE 180
           PLWLQYVKVPL+TLGYESSYDVFVKA GGGLSGQAQAISLGIARALLKVS DHR PL+KE
Sbjct: 121 PLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKE 180

Query: 181 GLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           GLLTRDSRVVERKK GLKKARKAPQFSKR
Sbjct: 181 GLLTRDSRVVERKKVGLKKARKAPQFSKR 209

[Close]
BLAST of CmaCh01G018850 vs. TrEMBL
Match: A0A0B2QI75_GLYSO (30S ribosomal protein S9, chloroplastic OS=Glycine soja GN=glysoja_009318 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-78
Identity = 164/204 (80.39%), Postives = 182/204 (89.22%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60
           MA S+S+L  SLSSLSFSS +SQ P  LSF R++SL +S S S S LVV+A+A +  ET 
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPCTLSFARTESLSLSVSPSPSSLVVTATALAEPETE 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK YVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKKYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180
           Y+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGLLTR
Sbjct: 121 YIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRAPLRQEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 DSRVVERKKVGLKKARKAPQYSKR 204

[Close]
BLAST of CmaCh01G018850 vs. TAIR10
Match: AT1G74970.1 (AT1G74970.1 ribosomal protein S9)

HSP 1 Score: 291.2 bits (744), Expect = 5.0e-79
Identity = 160/206 (77.67%), Postives = 178/206 (86.41%), Query Frame = 1 

Query: 4   SVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN +SFPR+ S+    +KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHR PLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]
BLAST of CmaCh01G018850 vs. TAIR10
Match: AT3G49080.1 (AT3G49080.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 9.2e-17
Identity = 59/153 (38.56%), Postives = 82/153 (53.59%), Query Frame = 1 

Query: 52  SATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEY 111
           S+ + +E    ++  K+R+          GTGRRK ++ARV +Q G GK  +N ++   Y
Sbjct: 279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVY 338

Query: 112 LQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPP 171
                     ++ PL        +D+    +GGG +GQ  AI LGI+RAL     D R  
Sbjct: 339 FPMLDHRAALLR-PLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTS 398

Query: 172 LKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           L+  G LTRDSRVVERKK G  KARK+ Q+ KR
Sbjct: 399 LRAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 430

[Close]
BLAST of CmaCh01G018850 vs. NCBI nr
Match: gi|659133236|ref|XP_008466625.1| (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 2.9e-89
Identity = 185/204 (90.69%), Postives = 194/204 (95.10%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P ALSFPRSKSL+IS S S SPL+VSASA +AVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CmaCh01G018850 vs. NCBI nr
Match: gi|449460125|ref|XP_004147796.1| (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 1.8e-86
Identity = 179/204 (87.75%), Postives = 191/204 (93.63%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P+ALSFPRSKSL+IS S S S LVV+ASA + VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]
BLAST of CmaCh01G018850 vs. NCBI nr
Match: gi|734351331|gb|KHN12741.1| (30S ribosomal protein S9, chloroplastic [Glycine soja])

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 167/207 (80.68%), Postives = 185/207 (89.37%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHS---KSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN LSF R++SL +S S   K+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRAPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

[Close]
BLAST of CmaCh01G018850 vs. NCBI nr
Match: gi|225458416|ref|XP_002283650.1| (PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera])

HSP 1 Score: 303.5 bits (776), Expect = 2.7e-79
Identity = 170/209 (81.34%), Postives = 181/209 (86.60%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSA---- 60
           MA S+SSL  SLSSLSFSS +SQ P++LSF RS SL ISH    S L V ASA +     
Sbjct: 1   MAISMSSLTSSLSSLSFSSHISQRPSSLSFVRSNSLSISHLTKTSSLAVVASAAAVASPL 60

Query: 61  -VETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGN 120
            +ETA+LK YVKSRLPGGFAAQT+IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGN
Sbjct: 61  ELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 120

Query: 121 PLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKE 180
           PLWLQYVKVPL+TLGYESSYDVFVKA GGGLSGQAQAISLGIARALLKVS DHR PL+KE
Sbjct: 121 PLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKE 180

Query: 181 GLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           GLLTRDSRVVERKK GLKKARKAPQFSKR
Sbjct: 181 GLLTRDSRVVERKKVGLKKARKAPQFSKR 209

[Close]
BLAST of CmaCh01G018850 vs. NCBI nr
Match: gi|351723489|ref|NP_001235745.1| (uncharacterized protein LOC100305975 [Glycine max])

HSP 1 Score: 303.5 bits (776), Expect = 2.7e-79
Identity = 167/207 (80.68%), Postives = 185/207 (89.37%), Query Frame = 1 

Query: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHS---KSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN LSF R++SL +S S   K+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

The following BLAST results are available for this feature:
BLAST of CmaCh01G018850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR9_ARATH8.8e-7877.6730S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=... [more]
RR9_SPIOL1.4e-7072.9630S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9... [more]
RS9_THEEB8.4e-3663.2030S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI ... [more]
RR9_MESVI1.4e-3566.4030S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1[more]
RS9_NOSP73.2e-3562.1030S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) G... [more]
BLAST of CmaCh01G018850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDS0_CUCSA1.2e-8687.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854240 PE=3 SV=1[more]
A0A0B2PTZ1_GLYSO1.5e-7980.6830S ribosomal protein S9, chloroplastic OS=Glycine soja GN=glysoja_008704 PE=3 S... [more]
C6SXF0_SOYBN1.9e-7980.68Uncharacterized protein OS=Glycine max GN=GLYMA_17G247300 PE=2 SV=1[more]
A5BPF9_VITVI1.9e-7981.34Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11750 PE=3 SV=... [more]
A0A0B2QI75_GLYSO1.2e-7880.3930S ribosomal protein S9, chloroplastic OS=Glycine soja GN=glysoja_009318 PE=3 S... [more]
BLAST of CmaCh01G018850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74970.15.0e-7977.67 ribosomal protein S9[more]
AT3G49080.19.2e-1738.56 Ribosomal protein S5 domain 2-like superfamily protein[more]
BLAST of CmaCh01G018850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133236|ref|XP_008466625.1|2.9e-8990.69PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo][more]
gi|449460125|ref|XP_004147796.1|1.8e-8687.75PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis sativus][more]
gi|734351331|gb|KHN12741.1|2.1e-7980.6830S ribosomal protein S9, chloroplastic [Glycine soja][more]
gi|225458416|ref|XP_002283650.1|2.7e-7981.34PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera][more]
gi|351723489|ref|NP_001235745.1|2.7e-7980.68uncharacterized protein LOC100305975 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR020568Ribosomal_S5_D2-typ_fold
IPR020574Ribosomal_S9_CS
IPR023035Ribosomal_S9_bac/plastid
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G018850.1CmaCh01G018850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 1..204
score: 8.6E
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 83..204
score: 1.3
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3DG3DSA:3.30.230.10coord: 78..204
score: 1.0
IPR020568Ribosomal protein S5 domain 2-type foldunknownSSF54211Ribosomal protein S5 domain 2-likecoord: 78..204
score: 2.96
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 143..161
scor
IPR023035Ribosomal protein S9, bacterial/plastidHAMAPMF_00532_BRibosomal_S9_Bcoord: 74..204
score: 32
NoneNo IPR availablePANTHERPTHR21569:SF230S RIBOSOMAL PROTEIN S9, CHLOROPLASTICcoord: 1..204
score: 8.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G018850Cucsa.342080Cucumber (Gy14) v1cgycmaB0934
CmaCh01G018850Cla020737Watermelon (97103) v1cmawmB440
CmaCh01G018850Csa3G854240Cucumber (Chinese Long) v2cmacuB444
CmaCh01G018850MELO3C003890Melon (DHL92) v3.5.1cmameB424
CmaCh01G018850ClCG05G019240Watermelon (Charleston Gray)cmawcgB411
CmaCh01G018850CSPI03G42420Wild cucumber (PI 183967)cmacpiB447
CmaCh01G018850CmoCh01G019480Cucurbita moschata (Rifu)cmacmoB469
CmaCh01G018850Lsi04G016340Bottle gourd (USVL1VR-Ls)cmalsiB424
CmaCh01G018850Cp4.1LG02g07370Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G018850MELO3C003890.2Melon (DHL92) v3.6.1cmamedB487
CmaCh01G018850CsaV3_3G044840Cucumber (Chinese Long) v3cmacucB0536
CmaCh01G018850Cla97C05G100770Watermelon (97103) v2cmawmbB479
CmaCh01G018850Bhi11G002148Wax gourdcmawgoB0551
CmaCh01G018850CsGy3G039930Cucumber (Gy14) v2cgybcmaB358
CmaCh01G018850Carg17124Silver-seed gourdcarcmaB1293
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G018850Cucumber (Gy14) v2cgybcmaB199
CmaCh01G018850Melon (DHL92) v3.6.1cmamedB464
CmaCh01G018850Melon (DHL92) v3.6.1cmamedB475
CmaCh01G018850Silver-seed gourdcarcmaB0136
CmaCh01G018850Cucumber (Chinese Long) v3cmacucB0524
CmaCh01G018850Cucumber (Chinese Long) v3cmacucB0589
CmaCh01G018850Watermelon (97103) v2cmawmbB504
CmaCh01G018850Wax gourdcmawgoB0576
CmaCh01G018850Cucurbita maxima (Rimu)cmacmaB051
CmaCh01G018850Cucurbita maxima (Rimu)cmacmaB182
CmaCh01G018850Cucurbita moschata (Rifu)cmacmoB435
CmaCh01G018850Cucurbita moschata (Rifu)cmacmoB483
CmaCh01G018850Cucurbita maxima (Rimu)cmacmaB415
CmaCh01G018850Cucumber (Gy14) v1cgycmaB0639
CmaCh01G018850Cucurbita moschata (Rifu)cmacmoB453
CmaCh01G018850Melon (DHL92) v3.5.1cmameB412
CmaCh01G018850Cucurbita pepo (Zucchini)cmacpeB507
CmaCh01G018850Cucurbita pepo (Zucchini)cmacpeB516
CmaCh01G018850Bottle gourd (USVL1VR-Ls)cmalsiB456