CsGy3G039930 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G039930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	30S ribosomal protein S9
Location	Chr3 : 37511531 .. 37514058 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTGTAAATTGAGAGGAGGATATAGTAAATTCACACACATTATCCCCTTCGAGCTTCATCATCTCACCCGTTCTTGCATACACTGCAGTTTCAATACCTTCATTCTGGATAGACAATGGCTACTTCTATATCCTCTCTTGCATTTTCTCTATCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTCTCCTTTCCCCGTTCAAAATCTCTTCTGATTTCCCCTTCCTCCTCTACTTCCTCACTTGTCGTAACTGCCTCCGCCGCTGCCGTTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTTGCCGCTCAGACGCTTTTTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGTGAAGGCACTGGCAAAGTTATTATCAATTACCGCGAAGCTAAGGTTCTCTATCTTTTCCTTTCTTCGCCTACTTTCCTTTAATTTAATCCGTTTTCTCTTTCTAATTTTTGGTGCTGGCTGTTCTTTGGACGATCTAGGGATTTTGTTTCTTTTGCTGAATTCGACTAGGTTCGTTTGATGGCAATGCAAATGTTTTCTTTCCTTTTTTTTATTAAACCAACAATTGTTGTTATATGTTCCTGATTAGCCTCTTCTATATGCGATGGAACTGATACTTTTCTTTAAGCTTTCCCCCACCGACTCTGTTATCGATCTGCGACGTTTATTATGTTGAAGTGGAAATGAACTTGAGAATAACAGTTTTTACATTCTAGAATTAAATTCTAAGGCTATTGTTTCTTCGTCTAGTGCGGTGAATTTATATTAGAAGATTCCATCGCTTGGTACTAAATTCGGATAAAGGACTGATGCGCATATCTAGTGCTTCTTGTAAGTTTGAGTTTGAGCTTCCAGTGAAATGGTTCATAATGCCAAAACACATATCTATTTCGGGGATTGAGTAGTTCCTTTTCTTTCTAAGTTGGTGTGGGAGGGAAAATGTGCCATCGTTCTTCCACTTACATCACATATGGAAATCCTTAGATAAATTAGATCAATTGCAAATCCTTCGTTTGCCATTTTCCAGTGTTCGTTTGTCATAGTGTTTCTGGAGATAGCAACTATAATCTTAGGACCTTACTTAAACAGGATCTGTTTTATTGGTTGTACAACTCTCTCCTTTAGGTTCTAAAGAGATGGAAATCATAGTATCAAGTCCTGTACGGGTGTAACTAATACCTACATTTGTTCCTTAATATGTTAAGATGTTTGTTTCACCTATAAATAAGTGAATTTAGCACAATTTTGCTTTCTTTCTTCCATTGAGAGGGAGTGGCGGGATTTGAACCTCAAGGCTTTTGTTCGAATGTATATGTCTTTCAAGCTTTGCTCATAGTGAAGAAACGTGTTCCGTTTCTTGTTAGGATGCCGCTTTCCCGTACATGTCTATAAGGTTTTTCTTTCGTTGTGTACAATAAGTGGGATTGTGAAGATTTATTACTGCTGAGATCAGGTTTTTCTAGCATTGATTCTTGAATTATCTCGTCTATACCCTTTCTGGAGTAAGTAGAAGATTCACCCAAATATTCACTGAGGCTCTAGCTCTTTTATTTATTTAAGACAACTTGTTATAACAACAACCAATTGGTTTTGTATGAAGTTTTTAAGCTGTAACTCACCTCTACATTGGAATACACTATTTGTTGCAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATATGAAAGTAGCTACGATGTATTCGTGAAGGCTGAAGGAGGCGGGCTATCTGGCCAGGCACAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACGCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGAGGTTCATTTTTCCTCTTCAATTGTTTTACGTTCCCTCGTTTCCTACTTTATTTGTACAACCCAGATGTTTTCTTCTACTTTTCTTTTACTCCCTGATGTAGTGTTATTCCAACATTTCTCCATATGGGGGGGAAGAAAGAAGTCAACCCAAAATTGATCATTCTAATTCTTTTAAAACAAACATCTCCCCGTTCGAAAAGCCCTCCTGAACAAGCAGAAAAGTAATAGAGAAATTGGGAATAATCATCAAAGGAAAAGAAATCCACAACTTGAAAATTTCATTATGTGAAAAATTATTACTTTTATATTATAGTTATCTATTGTATAAGAGTATTATACTGTTCACACTGTTAAGTAAGTATACCAAACTTTATATTTTAAATTAGGAAGATTAGAAACCAAAATCATGTCCTTTGTAGCCTATCAATTCTATGAACTTTTTCAATGTGGCACACCTTTCATATTTTGCTAAGACTCAATATGTTATACATTTTCTTTTAACAATGCACCTCTAATATTTGATAGTTTGGC

mRNA sequence

AATTTGTAAATTGAGAGGAGGATATAGTAAATTCACACACATTATCCCCTTCGAGCTTCATCATCTCACCCGTTCTTGCATACACTGCAGTTTCAATACCTTCATTCTGGATAGACAATGGCTACTTCTATATCCTCTCTTGCATTTTCTCTATCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTCTCCTTTCCCCGTTCAAAATCTCTTCTGATTTCCCCTTCCTCCTCTACTTCCTCACTTGTCGTAACTGCCTCCGCCGCTGCCGTTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTTGCCGCTCAGACGCTTTTTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGTGAAGGCACTGGCAAAGTTATTATCAATTACCGCGAAGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATATGAAAGTAGCTACGATGTATTCGTGAAGGCTGAAGGAGGCGGGCTATCTGGCCAGGCACAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACGCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGAGGTTCATTTTTCCTCTTCAATTGTTTTACGTTCCCTCGTTTCCTACTTTATTTGTACAACCCAGATGTTTTCTTCTACTTTTCTTTTACTCCCTGATGTAGTGTTATTCCAACATTTCTCCATATGGGGGGGAAGAAAGAAGTCAACCCAAAATTGATCATTCTAATTCTTTTAAAACAAACATCTCCCCGTTCGAAAAGCCCTCCTGAACAAGCAGAAAAGTAATAGAGAAATTGGGAATAATCATCAAAGGAAAAGAAATCCACAACTTGAAAATTTCATTATGTGAAAAATTATTACTTTTATATTATAGTTATCTATTGTATAAGAGTATTATACTGTTCACACTGTTAAGTAAGTATACCAAACTTTATATTTTAAATTAGGAAGATTAGAAACCAAAATCATGTCCTTTGTAGCCTATCAATTCTATGAACTTTTTCAATGTGGCACACCTTTCATATTTTGCTAAGACTCAATATGTTATACATTTTCTTTTAACAATGCACCTCTAATATTTGATAGTTTGGC

Coding sequence (CDS)

ATGGCTACTTCTATATCCTCTCTTGCATTTTCTCTATCTTCTCTCTCCTTTTCTTCCCAAGTATCACACAAGCCAAGTGCCCTCTCCTTTCCCCGTTCAAAATCTCTTCTGATTTCCCCTTCCTCCTCTACTTCCTCACTTGTCGTAACTGCCTCCGCCGCTGCCGTTGTCGAGACCGCCGACCTTAAGACTTTCGTCAAATCGAGCCTCCCTGGTGGTTTTGCCGCTCAGACGCTTTTTGGTACTGGTCGCCGGAAATCTGCCGTAGCTCGTGTTGTCCTTCGTGAAGGCACTGGCAAAGTTATTATCAATTACCGCGAAGCTAAGGAATATCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAATTCCTTTAGTAACATTAGGATATGAAAGTAGCTACGATGTATTCGTGAAGGCTGAAGGAGGCGGGCTATCTGGCCAGGCACAGGCAATTTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGATGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACGCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCTCGTAAAGCCCCACAATTCTCCAAGCGTTGA

Protein sequence

MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQFSKR

Homology

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BLAST of CsGy3G039930 vs. NCBI nr
Match: XP_004147796.1 (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis sativus] >KGN59928.1 hypothetical protein Csa_3G854240 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           DARVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

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BLAST of CsGy3G039930 vs. NCBI nr
Match: XP_008466625.1 (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo])

HSP 1 Score: 329.3 bits (843), Expect = 9.1e-87
Identity = 180/204 (88.24%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLIS                  ETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of CsGy3G039930 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 313.2 bits (801), Expect = 6.7e-82
Identity = 168/204 (82.35%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MA+SISSLAFSLSSLSFSSQ+S KP+ LSFPRSKSL+IS                  ETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +L++FVKS LPGGFAAQTL GTGRRKSA+ARVV++EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of CsGy3G039930 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata])

HSP 1 Score: 310.5 bits (794), Expect = 4.4e-81
Identity = 169/204 (82.84%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MATS+SSLAFSLSSLSFSSQVS  P++LSFPRSKSL+IS                  ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of CsGy3G039930 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309.3 bits (791), Expect = 9.7e-81
Identity = 168/204 (82.35%), Postives = 180/204 (88.24%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MATS+SSLAFSLSSLSFSSQ+S  P+ALSFPRSKSL+IS                  ETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLLTLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

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BLAST of CsGy3G039930 vs. TAIR10
Match: AT1G74970.1 (ribosomal protein S9)

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-74
Identity = 149/206 (72.33%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 4   SISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLI-----SXXXXXXXXXXXXXXXXXXE 63
           SI++LA SLSSLSFSSQVS +P+ +SFPR+ S+       +                  E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLW 123
             +LK +VKS LPGGFAAQ + GTGRRK A+ARVVL+EGTGKVIINYR+AKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVK+PLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDARVVERKKAGLKKARKAPQFSKR 205
           TRDARVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of CsGy3G039930 vs. TAIR10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-17
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 80  FGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKI--PLVTLGYESSYDV 139
           +GTGRRK ++ARV ++ G GK  +N +E   Y    P+      +  PL        +D+
Sbjct: 307 YGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYF---PMLDHRAALLRPLAETKTLGRWDI 366

Query: 140 FVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARK 199
               +GGG +GQ  AI LGI+RAL     D R+ L+  G LTRD+RVVERKK G  KARK
Sbjct: 367 KCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVERKKPGKAKARK 426

Query: 200 APQFSKR 205
           + Q+ KR
Sbjct: 427 SFQWVKR 430

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BLAST of CsGy3G039930 vs. Swiss-Prot
Match: sp|Q9XJ27|RR9_ARATH (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.7e-73
Identity = 149/206 (72.33%), Postives = 168/206 (81.55%), Query Frame = 0


Query: 4   SISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLI-----SXXXXXXXXXXXXXXXXXXE 63
           SI++LA SLSSLSFSSQVS +P+ +SFPR+ S+       +                  E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLW 123
             +LK +VKS LPGGFAAQ + GTGRRK A+ARVVL+EGTGKVIINYR+AKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 183
           LQYVK+PLVTLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDARVVERKKAGLKKARKAPQFSKR 205
           TRDARVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of CsGy3G039930 vs. Swiss-Prot
Match: sp|P82278|RR9_SPIOL (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 4.9e-68
Identity = 143/208 (68.75%), Postives = 161/208 (77.40%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIS----XXXXXXXXXXXXXXXXX 60
           MA SISSL  S +SLSF+S ++ KP  L   R+K   +S                     
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  XETADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNP 120
            ETADL+ FVKS LPGGFAAQT+ GTGRRK A+ARVVL+EGTGK IINYR+AKEYLQGNP
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNP 120

Query: 121 LWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEG 180
           LWLQYVK PL TLGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HR+PLK+EG
Sbjct: 121 LWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEG 180

Query: 181 LLTRDARVVERKKAGLKKARKAPQFSKR 205
           LLTRD+R+VERKK GLKKARKAPQFSKR
Sbjct: 181 LLTRDSRIVERKKPGLKKARKAPQFSKR 208

[Close]

BLAST of CsGy3G039930 vs. Swiss-Prot
Match: sp|Q8DMK7|RS9_THEEB (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-35
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 81  GTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVK 140
           GTGRRKSAVARV L  G+G++ IN R   +YLQ NP++L  VK PL TLG E+SYD++V 
Sbjct: 14  GTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYVN 73

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQ 200
           A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAPQ
Sbjct: 74  ATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAPQ 133

Query: 201 FSKR 205
           +SKR
Sbjct: 134 YSKR 137

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BLAST of CsGy3G039930 vs. Swiss-Prot
Match: sp|Q9MUV1|RR9_MESVI (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.5e-35
Identity = 82/124 (66.13%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 81  GTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFVK 140
           GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ VK
Sbjct: 14  GTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIVK 73

Query: 141 AEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAPQ 200
           A GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRD+RV ERKK GLKKARKAPQ
Sbjct: 74  AVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAPQ 133

Query: 201 FSKR 205
           FSKR
Sbjct: 134 FSKR 137

[Close]

BLAST of CsGy3G039930 vs. Swiss-Prot
Match: sp|B2ITM7|RS9_NOSP7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.9e-34
Identity = 75/125 (60.00%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 80  FGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQYVKIPLVTLGYESSYDVFV 139
           +GTGRRK+AVARV L  GTG++ +N ++   Y Q NP +L  +K PL TLG E+ YD+ V
Sbjct: 14  WGTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILV 73

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDARVVERKKAGLKKARKAP 199
           KAEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAP
Sbjct: 74  KAEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAP 133

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 134 QYSKR 138

[Close]

BLAST of CsGy3G039930 vs. TrEMBL
Match: tr|A0A0A0LDS0|A0A0A0LDS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854240 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 2.9e-89
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           DARVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of CsGy3G039930 vs. TrEMBL
Match: tr|A0A1S3CRR0|A0A1S3CRR0_CUCME (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 6.0e-87
Identity = 180/204 (88.24%), Postives = 185/204 (90.69%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISXXXXXXXXXXXXXXXXXXETA 60
           MATSISSLAFSLSSLSFSSQVSHKP+ALSFPRSKSLLIS                  ETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120
           DLK+FVKSSLPGGFAAQTL GTGRRKSAVARVVLREGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180
           YVK+PLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DARVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of CsGy3G039930 vs. TrEMBL
Match: tr|A0A2P5FZG2|A0A2P5FZG2_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_012510 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 9.0e-75
Identity = 159/206 (77.18%), Postives = 174/206 (84.47%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIS--XXXXXXXXXXXXXXXXXXE 60
           MA S++SL  SLSSLSFSSQVS KP+ LSF RSK + IS                    E
Sbjct: 1   MAVSVASLTSSLSSLSFSSQVSLKPNTLSFHRSKLVSISHVAKISPLVVSASVASTEGLE 60

Query: 61  TADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLW 120
           TADLK +VKS LPGGFAAQT+FGTGRRKSA+ARVVL+EGTGKVIINYR+AKEYLQGNPLW
Sbjct: 61  TADLKKYVKSRLPGGFAAQTIFGTGRRKSAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 120

Query: 121 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 180
           LQYVK+PLVTLGYESSYDVFVKA GGGLSGQAQAISLG+ARALLK+S+DHR PL+KEGLL
Sbjct: 121 LQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGVARALLKMSEDHRRPLRKEGLL 180

Query: 181 TRDARVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 TRDSRVVERKKAGLKKARKAPQFSKR 206

[Close]

BLAST of CsGy3G039930 vs. TrEMBL
Match: tr|A0A2I4FRJ5|A0A2I4FRJ5_9ROSI (30S ribosomal protein S9, chloroplastic OS=Juglans regia OX=51240 GN=LOC109001447 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 9.9e-74
Identity = 153/206 (74.27%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIS--XXXXXXXXXXXXXXXXXXE 60
           M+TS+SSL FS SSLSFSS +SHKP++LSF R +SL +S                    E
Sbjct: 1   MSTSLSSLTFSFSSLSFSSHISHKPNSLSFHRPRSLSLSHLSAPPSLVFLASAAPPAELE 60

Query: 61  TADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLW 120
           T DLK +VKS LPGGFAAQT+ GTGRRK A+ARVVL+EGTGKVIINYR+AKEYLQGNPLW
Sbjct: 61  TTDLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 120

Query: 121 LQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLL 180
           LQYVK+PLVTLGYES+YDVFVKA GGGLSGQAQAISLGIARALL+VS+DHR PL+KEGLL
Sbjct: 121 LQYVKVPLVTLGYESNYDVFVKAHGGGLSGQAQAISLGIARALLRVSEDHRRPLRKEGLL 180

Query: 181 TRDARVVERKKAGLKKARKAPQFSKR 205
           TRD+R+VERKK GLKKARKAPQFSKR
Sbjct: 181 TRDSRIVERKKVGLKKARKAPQFSKR 206

[Close]

BLAST of CsGy3G039930 vs. TrEMBL
Match: tr|A5BPF9|A5BPF9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11750 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.7e-73
Identity = 158/209 (75.60%), Postives = 171/209 (81.82%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLIS-----XXXXXXXXXXXXXXXX 60
           MA S+SSL  SLSSLSFSS +S +PS+LSF RS SL IS                     
Sbjct: 1   MAISMSSLTSSLSSLSFSSHISQRPSSLSFVRSNSLSISHLTKTSSLAVVASAAAVASPL 60

Query: 61  XXETADLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGN 120
             ETADLK +VKS LPGGFAAQT+ GTGRRK A+ARVVL+EGTGKVIINYR+AKEYLQGN
Sbjct: 61  ELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 120

Query: 121 PLWLQYVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKE 180
           PLWLQYVK+PLVTLGYESSYDVFVKA GGGLSGQAQAISLGIARALLKVS+DHR PL+KE
Sbjct: 121 PLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKE 180

Query: 181 GLLTRDARVVERKKAGLKKARKAPQFSKR 205
           GLLTRD+RVVERKK GLKKARKAPQFSKR
Sbjct: 181 GLLTRDSRVVERKKVGLKKARKAPQFSKR 209

The following BLAST results are available for this feature:

BLAST of CsGy3G039930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147796.1	4.4e-89	100.00	PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis sativus] >KGN59928.1...	[more]
XP_008466625.1	9.1e-87	88.24	PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo]	[more]
XP_022143016.1	6.7e-82	82.35	30S ribosomal protein S9, chloroplastic [Momordica charantia]	[more]
XP_022940950.1	4.4e-81	82.84	30S ribosomal protein S9, chloroplastic [Cucurbita moschata]	[more]
XP_023523256.1	9.7e-81	82.35	30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G039930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74970.1	4.8e-74	72.33	ribosomal protein S9	[more]
AT3G49080.1	4.1e-17	43.31	Ribosomal protein S5 domain 2-like superfamily protein	[more]

BLAST of CsGy3G039930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XJ27\|RR9_ARATH	8.7e-73	72.33	30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ...	[more]
sp\|P82278\|RR9_SPIOL	4.9e-68	68.75	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE...	[more]
sp\|Q8DMK7\|RS9_THEEB	2.5e-35	63.71	30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
sp\|Q9MUV1\|RR9_MESVI	5.5e-35	66.13	30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE...	[more]
sp\|B2ITM7\|RS9_NOSP7	7.9e-34	60.00	30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O...	[more]

BLAST of CsGy3G039930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LDS0\|A0A0A0LDS0_CUCSA	2.9e-89	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854240 PE=3 SV=1	[more]
tr\|A0A1S3CRR0\|A0A1S3CRR0_CUCME	6.0e-87	88.24	30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ...	[more]
tr\|A0A2P5FZG2\|A0A2P5FZG2_9ROSA	9.0e-75	77.18	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_012510 PE=3 SV=1	[more]
tr\|A0A2I4FRJ5\|A0A2I4FRJ5_9ROSI	9.9e-74	74.27	30S ribosomal protein S9, chloroplastic OS=Juglans regia OX=51240 GN=LOC10900144...	[more]
tr\|A5BPF9\|A5BPF9_VITVI	1.7e-73	75.60	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11750 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR020568	Ribosomal_S5_D2-typ_fold
IPR023035	Ribosomal_S9_bac/plastid
IPR020574	Ribosomal_S9_CS
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR000754	Ribosomal_S9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G039930.1	CsGy3G039930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 83..204 e-value: 3.4E-41 score: 140.5
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 44..204
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 74..204 e-value: 2.1E-45 score: 156.1
None	No IPR available	PANTHER	PTHR21569:SF11	30S RIBOSOMAL PROTEIN S9, CHLOROPLASTIC	coord: 44..204
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 143..161
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 74..204 score: 32.722
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	SSF54211	Ribosomal protein S5 domain 2-like	coord: 79..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G039930	Cla020737	Watermelon (97103) v1	cgybwmB230
CsGy3G039930	Csa3G854240	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G039930	MELO3C003890	Melon (DHL92) v3.5.1	cgybmeB185
CsGy3G039930	ClCG05G019240	Watermelon (Charleston Gray)	cgybwcgB215
CsGy3G039930	CSPI03G42420	Wild cucumber (PI 183967)	cgybcpiB111
CsGy3G039930	CmaCh01G018850	Cucurbita maxima (Rimu)	cgybcmaB358
CsGy3G039930	CmoCh01G019480	Cucurbita moschata (Rifu)	cgybcmoB330
CsGy3G039930	Cp4.1LG02g07370	Cucurbita pepo (Zucchini)	cgybcpeB387
CsGy3G039930	MELO3C003890.2	Melon (DHL92) v3.6.1	cgybmedB186
CsGy3G039930	CsaV3_3G044840	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G039930	Cla97C05G100770	Watermelon (97103) v2	cgybwmbB207
CsGy3G039930	Bhi11G002148	Wax gourd	cgybwgoB216
CsGy3G039930	Carg17124	Silver-seed gourd	carcgybB0934

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G039930	Cucurbita maxima (Rimu)	cgybcmaB287
CsGy3G039930	Cucurbita moschata (Rifu)	cgybcmoB260
CsGy3G039930	Cucurbita pepo (Zucchini)	cgybcpeB438
CsGy3G039930	Bottle gourd (USVL1VR-Ls)	cgyblsiB176
CsGy3G039930	Silver-seed gourd	carcgybB0111