CmoCh01G019480 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G019480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S9
Location	Cmo_Chr01 : 13873519 .. 13875330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCTCACCAGTCTCTCTACATCCACCGCAGTTTCAATTTTTGGAAGAAGCTACCTTCGTTCTGGATAGAGCACGAAAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGTCTTCTATCTTTTCCCTTATTCGTGTACTTGCGTTTGGTTTCATCCATTTTAGCTTTACTATTTTTGGCAGTGGATGTTCTTTGGACGATTTAGGGTTGTTGTTTCTTCTGCTGGATTCGACTAGGTTCGTTTAATGGTAATGCGAATGTTTTTTTTTGGATTAAACCGAAGATTGTAACTATAGGATCGTGATTTCTGTCTTTGATGCGCAAATTCTTGAACCATCTAGAGATGGAAGTGATTATTCAGTGTCTTTTCACTGGCCTTATAATTGATCTGCAGCAATTATTGTATTGAATTGAGATTGTGGAATAAACTTCGAACAACATTATCTACATTCTGGAGCATGTAAGTCTCTTAACGAGTAATTAAATTCTAAGCTTTCGGTACTTCATCTCATATGTTGAACATGGATTAGATTCCATTGCTTGCTGCCAAATTCAAAGGGATTGTGGAATAAGTGTTTTCATCAGTCACAAGTTGAGTTTGAGTTTCCAGTGGAATGGTTCTTAATGCTAAAAGGCATGTCTATTAGGGGGATCGAGTAGTTCATTTATTCTTTCTCAGTGGATTTGGGAGTGAAAATGTGCTTTTGTTCTTCCACTTCCATCACATGTGGGAATCTTTACTTTCTGATGATGTTAGATCACATTGCAAATCCTTGGTTTGCCAGCGTTCATTTACATCTGTGCTCTAATATGTAAAGATATTGAGAAAATTTAGTGACCAAGTGTGTTTCATTTCTTGTTAGGATGCCATTTTGCCTTGAATGTTTATTGGGTTTTCCTGGTATTGATGCTTGGATAACCCCATTCAAATTATGAGTGTGGTTTAAGTAGAGAGAGTTGTGCTCACCTCTGGGTTGGAATATACAATGTGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACCCTCTTTTCCTTCATTATTTGTACAACCCAGATGTTATTTTGTACTTACTTTCCTCTCTAATCTAGTGTTATCTTAAAATATTTCTCCATATGAGCTCTAAGCTAGAACGAGGATATGTATTCAAAACGCCACCCATAATTGATCATCATAACTTTTTTTGAACATATTTTTAGTCCATATAAATTTTACCTTTTGGATC

mRNA sequence

CTGCTCACCAGTCTCTCTACATCCACCGCAGTTTCAATTTTTGGAAGAAGCTACCTTCGTTCTGGATAGAGCACGAAAATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAAGGTTCCAATTCTTGTCGAATTGTTTTGCATACCCTCTTTTCCTTCATTATTTGTACAACCCAGATGTTATTTTGTACTTACTTTCCTCTCTAATCTAGTGTTATCTTAAAATATTTCTCCATATGAGCTCTAAGCTAGAACGAGGATATGTATTCAAAACGCCACCCATAATTGATCATCATAACTTTTTTTGAACATATTTTTAGTCCATATAAATTTTACCTTTTGGATC

Coding sequence (CDS)

ATGGCTACTTCTGTGTCCTCCCTCGCTTTCTCTCTCTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGATGCCAAACTCTCTGTCCTTTCCACGCTCAAAATCTCTTGTAATTTCCCACCCGAAATCCAATTCCCCACTCGTGGTATCTGCCTCCGCCACTTCCGCAGTGGAGACGGCGGAGCTTAAGAACTATGTGAAATCGAGGCTCCCTGGTGGCTTCGCTGCGCAAACGCTGATTGGCACTGGCCGCCGGAAATCTGCCGTTGCTCGCGTTGTTCTCCAAGAAGGCACTGGCAAAGTTATTATTAATTACCGCGACGCTAAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCTTTGTTAACTTTGGGATATGAAAGTAGCTACGACGTATTCGTAAAAGCCGAAGGAGGTGGCCTCTCCGGCCAGGCTCAGGCAATCTCCCTTGGCATTGCTCGTGCTCTGCTAAAGGTGAGCGCTGATCACAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGGGACTCTAGGGTTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCACAATTCTCCAAGCGTTAA

Homology

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BLAST of CmoCh01G019480 vs. Swiss-Prot
Match: RR9_ARATH (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-78
Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 4   SVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN++SFPR+ S+     KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

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BLAST of CmoCh01G019480 vs. Swiss-Prot
Match: RR9_SPIOL (30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 7.2e-72
Identity = 144/196 (73.47%), Postives = 168/196 (85.71%), Query Frame = 1


Query: 13  SSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSA----VETAELKNYVKS 72
           +SLSF+S ++  P +L   R+K   +S+P    PLV++A++ +A     ETA+L+ +VKS
Sbjct: 2   ASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEVAETADLEKFVKS 61

Query: 73  RLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLT 132
           RLPGGFAAQT+IGTGRRK A+ARVVLQEGTGK IINYRDAKEYLQGNPLWLQYVK PL T
Sbjct: 62  RLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLAT 121

Query: 133 LGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERK 192
           LGYE++YDVFVKA GGGLSGQAQAISLG+ARALLKVSA HR+PLK+EGLLTRDSR+VERK
Sbjct: 122 LGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERK 181

Query: 193 KAGLKKARKAPQFSKR 205
           K GLKKARKAPQFSKR
Sbjct: 182 KPGLKKARKAPQFSKR 197

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BLAST of CmoCh01G019480 vs. Swiss-Prot
Match: RS9_THEEB (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.4e-36
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G+G++ IN R+  +YLQ NP++L  VK PL TLG E+SYD++V
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
            A GGGL+GQA AI LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAP
Sbjct: 73  NATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAP 132

Query: 200 QFSKR 205
           Q+SKR
Sbjct: 133 QYSKR 137

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BLAST of CmoCh01G019480 vs. Swiss-Prot
Match: RR9_MESVI (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-35
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1


Query: 80  IGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFV 139
           +GTGRRKSAVARV L  G G+VIIN      YLQ N  +L  V+ PL TLG E +YD+ V
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIV 72

Query: 140 KAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAP 199
           KA GGGL+GQA+AI LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAP
Sbjct: 73  KAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAP 132

Query: 200 QFSKR 205
           QFSKR
Sbjct: 133 QFSKR 137

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BLAST of CmoCh01G019480 vs. Swiss-Prot
Match: RS9_NOSP7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.5e-34
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1


Query: 81  GTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLLTLGYESSYDVFVK 140
           GTGRRK+AVARV L  GTG++ +N +D   Y Q NP +L  +K PL TLG E+ YD+ VK
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVK 74

Query: 141 AEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQ 200
           AEGGGL+GQA ++ LG+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ
Sbjct: 75  AEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQ 134

Query: 201 FSKR 205
           +SKR
Sbjct: 135 YSKR 138

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BLAST of CmoCh01G019480 vs. TrEMBL
Match: A0A0A0LDS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854240 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.8e-86
Identity = 178/204 (87.25%), Postives = 191/204 (93.63%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P++LSFPRSKSL+IS   S S LVV+ASA + VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

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BLAST of CmoCh01G019480 vs. TrEMBL
Match: A0A0B2PTZ1_GLYSO (30S ribosomal protein S9, chloroplastic OS=Glycine soja GN=glysoja_008704 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.7e-80
Identity = 167/207 (80.68%), Postives = 187/207 (90.34%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVIS---HPKSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN+LSF R++SL +S    PK+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRAPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

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BLAST of CmoCh01G019480 vs. TrEMBL
Match: C6SXF0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G247300 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.9e-80
Identity = 167/207 (80.68%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVIS---HPKSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN+LSF R++SL +S    PK+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

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BLAST of CmoCh01G019480 vs. TrEMBL
Match: A5BPF9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11750 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.6e-80
Identity = 171/209 (81.82%), Postives = 181/209 (86.60%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSA---- 60
           MA S+SSL  SLSSLSFSS +SQ P+SLSF RS SL ISH    S L V ASA +     
Sbjct: 1   MAISMSSLTSSLSSLSFSSHISQRPSSLSFVRSNSLSISHLTKTSSLAVVASAAAVASPL 60

Query: 61  -VETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGN 120
            +ETA+LK YVKSRLPGGFAAQT+IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGN
Sbjct: 61  ELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 120

Query: 121 PLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKE 180
           PLWLQYVKVPL+TLGYESSYDVFVKA GGGLSGQAQAISLGIARALLKVS DHR PL+KE
Sbjct: 121 PLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKE 180

Query: 181 GLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           GLLTRDSRVVERKK GLKKARKAPQFSKR
Sbjct: 181 GLLTRDSRVVERKKVGLKKARKAPQFSKR 209

[Close]

BLAST of CmoCh01G019480 vs. TrEMBL
Match: A0A059DCD8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00474 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 4.3e-79
Identity = 168/211 (79.62%), Postives = 182/211 (86.26%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV--- 60
           MA SVSSLA SLSSLSFSSQVS  PN+L+ PR K L +S P   SPL VSASA +A    
Sbjct: 1   MALSVSSLASSLSSLSFSSQVSPKPNALALPRPKPLSVSLPSRASPLAVSASAAAAPAAA 60

Query: 61  ----ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQ 120
               E A+L+ YVKSRLPGGFAAQ++ GTGRRK A+ARVVLQEGTGKV+INYRDAKEYLQ
Sbjct: 61  PSEPEAADLRKYVKSRLPGGFAAQSIFGTGRRKCAIARVVLQEGTGKVVINYRDAKEYLQ 120

Query: 121 GNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLK 180
           GNPLWLQYVKVPL+TLGYE+SYDVFVKA GGGLSGQAQAISLGIARALLKVS DHRSPL+
Sbjct: 121 GNPLWLQYVKVPLVTLGYENSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRSPLR 180

Query: 181 KEGLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           +EGLLTRDSRVVERKK GLKKARKAPQFSKR
Sbjct: 181 EEGLLTRDSRVVERKKVGLKKARKAPQFSKR 211

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BLAST of CmoCh01G019480 vs. TAIR10
Match: AT1G74970.1 (AT1G74970.1 ribosomal protein S9)

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-79
Identity = 161/206 (78.16%), Postives = 179/206 (86.89%), Query Frame = 1


Query: 4   SVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAV-----E 63
           S+++LA SLSSLSFSSQVSQ PN++SFPR+ S+     KS     +S +AT +      E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLW 123
             ELK YVKSRLPGGFAAQ +IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGNPLW
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLW 122

Query: 124 LQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLL 183
           LQYVKVPL+TLGYE+SYD+FVKA GGGLSGQAQAI+LG+ARALLKVSADHRSPLKKEGLL
Sbjct: 123 LQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLL 182

Query: 184 TRDSRVVERKKAGLKKARKAPQFSKR 205
           TRD+RVVERKKAGLKKARKAPQFSKR
Sbjct: 183 TRDARVVERKKAGLKKARKAPQFSKR 208

[Close]

BLAST of CmoCh01G019480 vs. TAIR10
Match: AT3G49080.1 (AT3G49080.1 Ribosomal protein S5 domain 2-like superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-17
Identity = 59/153 (38.56%), Postives = 83/153 (54.25%), Query Frame = 1


Query: 52  SATSAVETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEY 111
           S+ + +E    ++  K+R+          GTGRRK ++ARV +Q G GK  +N ++   Y
Sbjct: 279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVY 338

Query: 112 LQGNPLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSP 171
                     ++ PL        +D+    +GGG +GQ  AI LGI+RAL     D R+ 
Sbjct: 339 FPMLDHRAALLR-PLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTS 398

Query: 172 LKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           L+  G LTRDSRVVERKK G  KARK+ Q+ KR
Sbjct: 399 LRAAGFLTRDSRVVERKKPGKAKARKSFQWVKR 430

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BLAST of CmoCh01G019480 vs. NCBI nr
Match: gi|659133236|ref|XP_008466625.1| (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 6.5e-89
Identity = 184/204 (90.20%), Postives = 194/204 (95.10%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P +LSFPRSKSL+IS   S SPL+VSASA +AVETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK++VKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAKEYLQGNPLWLQ
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVKVPL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           DSRVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DSRVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of CmoCh01G019480 vs. NCBI nr
Match: gi|449460125|ref|XP_004147796.1| (PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis sativus])

HSP 1 Score: 326.2 bits (835), Expect = 4.0e-86
Identity = 178/204 (87.25%), Postives = 191/204 (93.63%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60
           MATS+SSLAFSLSSLSFSSQVS  P++LSFPRSKSL+IS   S S LVV+ASA + VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPSALSFPRSKSLLISPSSSTSSLVVTASAAAVVETA 60

Query: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPLWLQ 120
           +LK +VKS LPGGFAAQTL GTGRRKSAVARVVL+EGTGKVIINYR+AKEYLQGNPLWLQ
Sbjct: 61  DLKTFVKSSLPGGFAAQTLFGTGRRKSAVARVVLREGTGKVIINYREAKEYLQGNPLWLQ 120

Query: 121 YVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTR 180
           YVK+PL+TLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTR
Sbjct: 121 YVKIPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTR 180

Query: 181 DSRVVERKKAGLKKARKAPQFSKR 205
           D+RVVERKKAGLKKARKAPQFSKR
Sbjct: 181 DARVVERKKAGLKKARKAPQFSKR 204

[Close]

BLAST of CmoCh01G019480 vs. NCBI nr
Match: gi|734351331|gb|KHN12741.1| (30S ribosomal protein S9, chloroplastic [Glycine soja])

HSP 1 Score: 307.0 bits (785), Expect = 2.5e-80
Identity = 167/207 (80.68%), Postives = 187/207 (90.34%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVIS---HPKSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN+LSF R++SL +S    PK+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR+PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRAPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

[Close]

BLAST of CmoCh01G019480 vs. NCBI nr
Match: gi|351723489|ref|NP_001235745.1| (uncharacterized protein LOC100305975 [Glycine max])

HSP 1 Score: 305.8 bits (782), Expect = 5.5e-80
Identity = 167/207 (80.68%), Postives = 186/207 (89.86%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVIS---HPKSNSPLVVSASATSAV 60
           MA S+S+L  SLSSLSFSS +SQ PN+LSF R++SL +S    PK+ S LVVSA+A +  
Sbjct: 1   MAVSLSALTTSLSSLSFSSHISQRPNTLSFARTESLSVSVSRFPKTPSSLVVSATALAEP 60

Query: 61  ETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGNPL 120
           ET +LKNYVKSRLPGGFAAQT+IGTGRRKSA+ARVVLQEGTGK IINYRDAKEYLQGNPL
Sbjct: 61  ETEDLKNYVKSRLPGGFAAQTIIGTGRRKSAIARVVLQEGTGKFIINYRDAKEYLQGNPL 120

Query: 121 WLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGL 180
           WLQY+KVPL+TLGYES+YDVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PL++EGL
Sbjct: 121 WLQYIKVPLITLGYESNYDVFVKAEGGGLSGQAQAISLGIARALLKVSEDHRVPLRQEGL 180

Query: 181 LTRDSRVVERKKAGLKKARKAPQFSKR 205
           LTRDSRVVERKK GLKKARKAPQ+SKR
Sbjct: 181 LTRDSRVVERKKVGLKKARKAPQYSKR 207

[Close]

BLAST of CmoCh01G019480 vs. NCBI nr
Match: gi|225458416|ref|XP_002283650.1| (PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera])

HSP 1 Score: 305.1 bits (780), Expect = 9.4e-80
Identity = 171/209 (81.82%), Postives = 181/209 (86.60%), Query Frame = 1


Query: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSA---- 60
           MA S+SSL  SLSSLSFSS +SQ P+SLSF RS SL ISH    S L V ASA +     
Sbjct: 1   MAISMSSLTSSLSSLSFSSHISQRPSSLSFVRSNSLSISHLTKTSSLAVVASAAAVASPL 60

Query: 61  -VETAELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAKEYLQGN 120
            +ETA+LK YVKSRLPGGFAAQT+IGTGRRK A+ARVVLQEGTGKVIINYRDAKEYLQGN
Sbjct: 61  ELETADLKKYVKSRLPGGFAAQTIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGN 120

Query: 121 PLWLQYVKVPLLTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKE 180
           PLWLQYVKVPL+TLGYESSYDVFVKA GGGLSGQAQAISLGIARALLKVS DHR PL+KE
Sbjct: 121 PLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGIARALLKVSEDHRGPLRKE 180

Query: 181 GLLTRDSRVVERKKAGLKKARKAPQFSKR 205
           GLLTRDSRVVERKK GLKKARKAPQFSKR
Sbjct: 181 GLLTRDSRVVERKKVGLKKARKAPQFSKR 209

The following BLAST results are available for this feature:

BLAST of CmoCh01G019480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR9_ARATH	3.0e-78	78.16	30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=...	[more]
RR9_SPIOL	7.2e-72	73.47	30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9...	[more]
RS9_THEEB	8.4e-36	63.20	30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI ...	[more]
RR9_MESVI	1.4e-35	66.40	30S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1	[more]
RS9_NOSP7	3.5e-34	61.29	30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) G...	[more]

BLAST of CmoCh01G019480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDS0_CUCSA	2.8e-86	87.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G854240 PE=3 SV=1	[more]
A0A0B2PTZ1_GLYSO	1.7e-80	80.68	30S ribosomal protein S9, chloroplastic OS=Glycine soja GN=glysoja_008704 PE=3 S...	[more]
C6SXF0_SOYBN	3.9e-80	80.68	Uncharacterized protein OS=Glycine max GN=GLYMA_17G247300 PE=2 SV=1	[more]
A5BPF9_VITVI	6.6e-80	81.82	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11750 PE=3 SV=...	[more]
A0A059DCD8_EUCGR	4.3e-79	79.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00474 PE=3 SV=1	[more]

BLAST of CmoCh01G019480 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74970.1	1.7e-79	78.16	ribosomal protein S9	[more]
AT3G49080.1	5.4e-17	38.56	Ribosomal protein S5 domain 2-like superfamily protein	[more]

BLAST of CmoCh01G019480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133236\|ref\|XP_008466625.1\|	6.5e-89	90.20	PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis melo]	[more]
gi\|449460125\|ref\|XP_004147796.1\|	4.0e-86	87.25	PREDICTED: 30S ribosomal protein S9, chloroplastic [Cucumis sativus]	[more]
gi\|734351331\|gb\|KHN12741.1\|	2.5e-80	80.68	30S ribosomal protein S9, chloroplastic [Glycine soja]	[more]
gi\|351723489\|ref\|NP_001235745.1\|	5.5e-80	80.68	uncharacterized protein LOC100305975 [Glycine max]	[more]
gi\|225458416\|ref\|XP_002283650.1\|	9.4e-80	81.82	PREDICTED: 30S ribosomal protein S9, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000754	Ribosomal_S9
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold
IPR020574	Ribosomal_S9_CS
IPR023035	Ribosomal_S9_bac/plastid

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G019480.1	CmoCh01G019480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 1..204 score: 1.7E
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 83..204 score: 1.4
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	G3DSA:3.30.230.10		coord: 78..204 score: 1.4
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 78..204 score: 4.93
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 143..161 scor
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 74..204 score: 32
None	No IPR available	PANTHER	PTHR21569:SF2	30S RIBOSOMAL PROTEIN S9, CHLOROPLASTIC	coord: 1..204 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G019480	Cucsa.342080	Cucumber (Gy14) v1	cgycmoB0934
CmoCh01G019480	CmaCh01G018850	Cucurbita maxima (Rimu)	cmacmoB469
CmoCh01G019480	Cla020737	Watermelon (97103) v1	cmowmB434
CmoCh01G019480	Csa3G854240	Cucumber (Chinese Long) v2	cmocuB431
CmoCh01G019480	MELO3C003890	Melon (DHL92) v3.5.1	cmomeB414
CmoCh01G019480	ClCG05G019240	Watermelon (Charleston Gray)	cmowcgB412
CmoCh01G019480	CSPI03G42420	Wild cucumber (PI 183967)	cmocpiB435
CmoCh01G019480	Cp4.1LG02g07370	Cucurbita pepo (Zucchini)	cmocpeB450
CmoCh01G019480	MELO3C003890.2	Melon (DHL92) v3.6.1	cmomedB474
CmoCh01G019480	CsaV3_3G044840	Cucumber (Chinese Long) v3	cmocucB0521
CmoCh01G019480	Cla97C05G100770	Watermelon (97103) v2	cmowmbB461
CmoCh01G019480	Bhi11G002148	Wax gourd	cmowgoB0549
CmoCh01G019480	CsGy3G039930	Cucumber (Gy14) v2	cgybcmoB330
CmoCh01G019480	Carg17124	Silver-seed gourd	carcmoB1263

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G019480	Cucurbita maxima (Rimu)	cmacmoB047
CmoCh01G019480	Cucurbita maxima (Rimu)	cmacmoB183
CmoCh01G019480	Cucurbita maxima (Rimu)	cmacmoB646
CmoCh01G019480	Cucurbita maxima (Rimu)	cmacmoB780
CmoCh01G019480	Cucurbita maxima (Rimu)	cmacmoB851
CmoCh01G019480	Wild cucumber (PI 183967)	cmocpiB428
CmoCh01G019480	Cucumber (Chinese Long) v2	cmocuB424
CmoCh01G019480	Melon (DHL92) v3.5.1	cmomeB403
CmoCh01G019480	Watermelon (Charleston Gray)	cmowcgB435
CmoCh01G019480	Watermelon (97103) v1	cmowmB416
CmoCh01G019480	Cucurbita pepo (Zucchini)	cmocpeB465
CmoCh01G019480	Cucurbita pepo (Zucchini)	cmocpeB474
CmoCh01G019480	Bottle gourd (USVL1VR-Ls)	cmolsiB412
CmoCh01G019480	Bottle gourd (USVL1VR-Ls)	cmolsiB442
CmoCh01G019480	Cucumber (Gy14) v2	cgybcmoB193
CmoCh01G019480	Melon (DHL92) v3.6.1	cmomedB461
CmoCh01G019480	Silver-seed gourd	carcmoB0146
CmoCh01G019480	Cucumber (Chinese Long) v3	cmocucB0510
CmoCh01G019480	Watermelon (97103) v2	cmowmbB486
CmoCh01G019480	Wax gourd	cmowgoB0570
CmoCh01G019480	Cucurbita moschata (Rifu)	cmocmoB017
CmoCh01G019480	Cucurbita moschata (Rifu)	cmocmoB141
CmoCh01G019480	Cucurbita moschata (Rifu)	cmocmoB352
CmoCh01G019480	Cucurbita moschata (Rifu)	cmocmoB369
CmoCh01G019480	Cucurbita moschata (Rifu)	cmocmoB376
CmoCh01G019480	Cucumber (Gy14) v1	cgycmoB0642