CmaCh00G004680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G004680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCma_Chr00 : 34647837 .. 34648638 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGTAGGGTCACTATTAGGTTATCCAAAGCGATTAAGCTGTATAGGGTTTGAAGATACTTTTGAGGAATTTATACCCTGTTTTTTTTGTCAAGATTATGAAATTGTTTGAATGTTGAGGAACCGCGTTTGCGTTCTTTAAGCTGGCATTTAAGGATGACTGTGAAGGAACTGTTAGGTCTTGTTGTGTTGTGTTGTAGGGAAGTTGTTTAGGTATGTGGTTCGAAAGGGACCTCTCCCTCATAATTATATGTTTAACATAATGATTCTTGGGTTTTGTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTGTAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGG

mRNA sequence

ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTGTAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGG

Coding sequence (CDS)

ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTGTAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGG

Protein sequence

MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDAFCR
Homology
[Close]
BLAST of CmaCh00G004680 vs. TrEMBL
Match: A0A0A0L7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF CEPDVYS+N VINANCLKGQSS ALH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 161 FCR 164
           FC+
Sbjct: 337 FCK 339

[Close]
BLAST of CmaCh00G004680 vs. TrEMBL
Match: M5XKW6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021344mg PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.7e-12
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF C+PDV ++N VINANC++GQ+  ALHWV+LM +  CK SI T S++++A
Sbjct: 76  ESLLHVMWKFQCDPDVIAYNIVINANCVRGQTLDALHWVHLMTSRACKPSIVTFSTILNA 135

Query: 161 FCR 164
            C+
Sbjct: 136 LCK 138

[Close]
BLAST of CmaCh00G004680 vs. TrEMBL
Match: A0A022RMZ3_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025391mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L  V  K+ CEPDV+++N +INA C++G S  AL WV++M+ NGCK S AT S+VI+A
Sbjct: 277 ESLLCVMGKYGCEPDVHTYNILINAYCVRGWSWDALDWVDVMVENGCKPSSATFSTVINA 336

Query: 161 FCR 164
           FC+
Sbjct: 337 FCK 339

[Close]
BLAST of CmaCh00G004680 vs. TrEMBL
Match: V4U3T4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018805mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 33/63 (52.38%), Postives = 46/63 (73.02%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  K+ C  D +++N +INA C++GQ+S AL+W++LMI  GCK S AT S+VIDA
Sbjct: 276 ESLLHVMHKYMCVADFFAYNILINAYCIRGQTSYALYWMHLMIERGCKPSTATFSTVIDA 335

Query: 161 FCR 164
            C+
Sbjct: 336 LCK 338

[Close]
BLAST of CmaCh00G004680 vs. TrEMBL
Match: M0ZN47_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001689 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 31/63 (49.21%), Postives = 48/63 (76.19%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L H+  KF CEPDV+++N +INA C+ G +S AL WV++M+ +GC+ +I+T S+VI+A
Sbjct: 169 ESLFHLMRKFGCEPDVFTYNILINAYCIGGWTSDALKWVHMMVEHGCRPTISTFSTVINA 228

Query: 161 FCR 164
            C+
Sbjct: 229 LCK 231

[Close]
BLAST of CmaCh00G004680 vs. TAIR10
Match: AT1G62720.1 (AT1G62720.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-06
Identity = 18/51 (35.29%), Postives = 35/51 (68.63%), Query Frame = 1 

Query: 113 EPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDAFCR 164
           +PDV+++NS+IN  C+ G+  +A   ++LM+  GC   + T +++I+ FC+
Sbjct: 276 DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCK 326

[Close]
BLAST of CmaCh00G004680 vs. NCBI nr
Match: gi|778677688|ref|XP_011650837.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF CEPDVYS+N VINANCLKGQSS ALH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 161 FCR 164
           FC+
Sbjct: 337 FCK 339

[Close]
BLAST of CmaCh00G004680 vs. NCBI nr
Match: gi|700201554|gb|KGN56687.1| (hypothetical protein Csa_3G128950 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF CEPDVYS+N VINANCLKGQSS ALH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 161 FCR 164
           FC+
Sbjct: 337 FCK 339

[Close]
BLAST of CmaCh00G004680 vs. NCBI nr
Match: gi|659075696|ref|XP_008438280.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 9.1e-17
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF CEPDVYS+N VI+ANCLKGQSS ALH VNLMIAN CK SIAT  ++IDA
Sbjct: 275 EALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDA 334

Query: 161 FCR 164
           FC+
Sbjct: 335 FCK 337

[Close]
BLAST of CmaCh00G004680 vs. NCBI nr
Match: gi|694390858|ref|XP_009370981.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF C+PDV ++N VINANC++GQ+  ALHWV+LMIA  CK S  T S+VI+A
Sbjct: 326 ESLLHVMWKFQCDPDVITYNIVINANCVRGQTDDALHWVHLMIARACKPSTVTFSTVINA 385

Query: 161 FCR 164
            C+
Sbjct: 386 LCK 388

[Close]
BLAST of CmaCh00G004680 vs. NCBI nr
Match: gi|657949584|ref|XP_008343898.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Malus domestica])

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 

Query: 101 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDA 160
           E L HV  KF C+PDV ++N VINANC++GQ+  ALHWV+LMIA  CK S  T S+VI+A
Sbjct: 261 ESLLHVMWKFQCDPDVITYNIVINANCVRGQTDDALHWVHLMIARACKPSTVTFSTVINA 320

Query: 161 FCR 164
            C+
Sbjct: 321 LCK 323

The following BLAST results are available for this feature:
BLAST of CmaCh00G004680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G004680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7U2_CUCSA2.2e-1773.02Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128950 PE=4 SV=1[more]
M5XKW6_PRUPE4.7e-1253.97Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021344mg PE=4 S... [more]
A0A022RMZ3_ERYGU1.2e-1053.97Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025391mg... [more]
V4U3T4_9ROSI1.5e-1052.38Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018805mg PE=4 SV=1[more]
M0ZN47_SOLTU1.5e-1049.21Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001689 PE=4 SV=1[more]
BLAST of CmaCh00G004680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62720.13.4e-0635.29 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of CmaCh00G004680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677688|ref|XP_011650837.1|3.1e-1773.02PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis s... [more]
gi|700201554|gb|KGN56687.1|3.1e-1773.02hypothetical protein Csa_3G128950 [Cucumis sativus][more]
gi|659075696|ref|XP_008438280.1|9.1e-1773.02PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-... [more]
gi|694390858|ref|XP_009370981.1|7.9e-1358.73PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
gi|657949584|ref|XP_008343898.1|7.9e-1358.73PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G004680.1CmaCh00G004680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 114..163
score: 1.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 117..149
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 115..149
score: 8
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 114..163
score: 7.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G004680CmoCh14G019850Cucurbita moschata (Rifu)cmacmoB010
CmaCh00G004680Lsi05G018870Bottle gourd (USVL1VR-Ls)cmalsiB008
CmaCh00G004680Cp4.1LG03g17630Cucurbita pepo (Zucchini)cmacpeB007
CmaCh00G004680Cp4.1LG08g02520Cucurbita pepo (Zucchini)cmacpeB018
CmaCh00G004680MELO3C006272.2Melon (DHL92) v3.6.1cmamedB003
CmaCh00G004680CsaV3_3G010510Cucumber (Chinese Long) v3cmacucB0004
CmaCh00G004680Cla97C05G083520Watermelon (97103) v2cmawmbB003
CmaCh00G004680Bhi01G000122Wax gourdcmawgoB0002
CmaCh00G004680CsGy3G010460Cucumber (Gy14) v2cgybcmaB276
CmaCh00G004680Carg14893Silver-seed gourdcarcmaB0873
CmaCh00G004680Carg06327Silver-seed gourdcarcmaB1316
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh00G004680CmaCh14G019300Cucurbita maxima (Rimu)cmacmaB014
CmaCh00G004680CmaCh06G011800Cucurbita maxima (Rimu)cmacmaB021
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G004680Cucurbita maxima (Rimu)cmacmaB003