CmaCh06G011800 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh06G011800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_5
LocationCma_Chr06 : 7938807 .. 7939897 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGTAGGGTCACTATTAGGTTATCCAAAGCGATTAAGCTGTATAGGGTTTGAAGATACTTTTGAGGAATTTATACCCTGTTTTTTTTGTCAAGATTATGAAATTGTTTGAATGTTGAGGAACCGCGTTTGCGTTCTTTAAGCTGGCATTTAAGGATGACTGTGAAGGAACTGTTAGGTCTTGTTGTGTTGTGTTGTAGGGAAGTTGTTTAGGTATGTGGTTCGAAAGGGACCTCTCCCTCATAATTATATGTTTAACATAATGATTCTTGGGTTTTGTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTGTAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGGGGGGGGGGGGGGGNGAAATTTTTTGTTGAAATTGTAGATATGTGGATCAATTATTAAGGGATATATCTGTATCTGGTTTGCTTAACGATTCTTCACTATGTCATGTAACTGTCTCAGGACTGTGCATGGGCTGGTAGATACGATGAAACCATGATGTTTTTAGAGGATTTACTCGAGAAAGGATTTCCTCCAACTGGTTGCTTTTAATTCCATTCTTGCAGAATGCGGCAGTGCAAGTTTAGAAGAGAGAGCATTTTATGCTTATGGTACAGTGGCGAATTTGGTTTAA

mRNA sequence

ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGGAAGTTGTTTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTAATGCGGCAGTGCAAGTTTAGAAGAGAGAGCATTTTATGCTTATGGTACAGTGGCGAATTTGGTTTAA

Coding sequence (CDS)

ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGGAAGTTGTTTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTAA

Protein sequence

MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSCLERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG
Homology
[Close]
BLAST of CmaCh06G011800 vs. TrEMBL
Match: A0A0A0L7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLSS QT  PK  NEYCSSSSSD  + +FDY+ QFLPSNDGTL+ ISV+SVT + 
Sbjct: 14  VHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRVTVGLSK 83

[Close]
BLAST of CmaCh06G011800 vs. TrEMBL
Match: M5XKW6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021344mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-06
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLM 159
           E L HV  KF C+PDV ++N VINANC++GQ+  ALHWV+LM
Sbjct: 76  ESLLHVMWKFQCDPDVIAYNIVINANCVRGQTLDALHWVHLM 117

[Close]
BLAST of CmaCh06G011800 vs. NCBI nr
Match: gi|778677688|ref|XP_011650837.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-14
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLSS QT  PK  NEYCSSSSSD  + +FDY+ QFLPSNDGTL+ ISV+SVT + 
Sbjct: 14  VHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRVTVGLSK 83

[Close]
BLAST of CmaCh06G011800 vs. NCBI nr
Match: gi|700201554|gb|KGN56687.1| (hypothetical protein Csa_3G128950 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-14
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLSS QT  PK  NEYCSSSSSD  + +FDY+ QFLPSNDGTL+ ISV+SVT + 
Sbjct: 14  VHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRVTVGLSK 83

[Close]
BLAST of CmaCh06G011800 vs. NCBI nr
Match: gi|659075696|ref|XP_008438280.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 9.6e-11
Identity = 44/78 (56.41%), Postives = 50/78 (64.10%), Query Frame = 1 

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLSS QT  PKF NEY  SS S   S  FDY+ QFLPSNDGTL+ ISV+SVT + 
Sbjct: 14  VHWSSSLSSSQTLIPKFFNEYYYSSDSSTRS--FDYIAQFLPSNDGTLKLISVNSVTTND 73

Query: 116 LERLEHVTSKFSCEPDVY 134
             R+    SK    P  Y
Sbjct: 74  RRRVSVGLSKAVKLPQGY 89

[Close]
BLAST of CmaCh06G011800 vs. NCBI nr
Match: gi|694390858|ref|XP_009370981.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Pyrus x bretschneideri])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIA 161
           E L HV  KF C+PDV ++N VINANC++GQ+  ALHWV+LMIA
Sbjct: 326 ESLLHVMWKFQCDPDVITYNIVINANCVRGQTDDALHWVHLMIA 369

[Close]
BLAST of CmaCh06G011800 vs. NCBI nr
Match: gi|657949584|ref|XP_008343898.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Malus domestica])

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-07
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIA 161
           E L HV  KF C+PDV ++N VINANC++GQ+  ALHWV+LMIA
Sbjct: 261 ESLLHVMWKFQCDPDVITYNIVINANCVRGQTDDALHWVHLMIA 304

The following BLAST results are available for this feature:
BLAST of CmaCh06G011800 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh06G011800 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7U2_CUCSA2.9e-1462.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128950 PE=4 SV=1[more]
M5XKW6_PRUPE2.2e-0661.90Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021344mg PE=4 S... [more]
BLAST of CmaCh06G011800 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh06G011800 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677688|ref|XP_011650837.1|4.2e-1462.86PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis s... [more]
gi|700201554|gb|KGN56687.1|4.2e-1462.86hypothetical protein Csa_3G128950 [Cucumis sativus][more]
gi|659075696|ref|XP_008438280.1|9.6e-1156.41PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-... [more]
gi|694390858|ref|XP_009370981.1|2.2e-0763.64PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
gi|657949584|ref|XP_008343898.1|2.2e-0763.64PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G011800.1CmaCh06G011800.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh06G011800CmoCh14G019850Cucurbita moschata (Rifu)cmacmoB797
CmaCh06G011800Lsi05G018870Bottle gourd (USVL1VR-Ls)cmalsiB764
CmaCh06G011800Cp4.1LG03g17630Cucurbita pepo (Zucchini)cmacpeB837
CmaCh06G011800MELO3C006272.2Melon (DHL92) v3.6.1cmamedB863
CmaCh06G011800Cla97C05G083520Watermelon (97103) v2cmawmbB856
CmaCh06G011800Bhi01G000122Wax gourdcmawgoB1007
CmaCh06G011800CsGy3G010460Cucumber (Gy14) v2cgybcmaB427
CmaCh06G011800Carg14893Silver-seed gourdcarcmaB0877
CmaCh06G011800Carg06327Silver-seed gourdcarcmaB1325
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh06G011800CmaCh00G004680Cucurbita maxima (Rimu)cmacmaB021
CmaCh06G011800CmaCh14G019300Cucurbita maxima (Rimu)cmacmaB285
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh06G011800Watermelon (97103) v2cmawmbB865
CmaCh06G011800Cucurbita maxima (Rimu)cmacmaB370
CmaCh06G011800Cucurbita maxima (Rimu)cmacmaB557
CmaCh06G011800Cucumber (Gy14) v1cgycmaB0727
CmaCh06G011800Cucurbita moschata (Rifu)cmacmoB811
CmaCh06G011800Cucurbita moschata (Rifu)cmacmoB829
CmaCh06G011800Cucurbita moschata (Rifu)cmacmoB837
CmaCh06G011800Wild cucumber (PI 183967)cmacpiB826
CmaCh06G011800Cucumber (Chinese Long) v2cmacuB814
CmaCh06G011800Melon (DHL92) v3.5.1cmameB763
CmaCh06G011800Watermelon (Charleston Gray)cmawcgB737
CmaCh06G011800Watermelon (97103) v1cmawmB798
CmaCh06G011800Cucurbita pepo (Zucchini)cmacpeB811
CmaCh06G011800Cucurbita pepo (Zucchini)cmacpeB823
CmaCh06G011800Cucurbita pepo (Zucchini)cmacpeB854
CmaCh06G011800Silver-seed gourdcarcmaB0317
CmaCh06G011800Silver-seed gourdcarcmaB1493
CmaCh06G011800Silver-seed gourdcarcmaB1494
CmaCh06G011800Cucumber (Chinese Long) v3cmacucB0965