Carg06327 (gene) Silver-seed gourd

Overview
NameCarg06327
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_016 : 976580 .. 977462 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGGCCCAAAGTTCAACTGCTCAGGCCCATTTCGAAATATCGTCTTCCAGTTCTTGCTGACCGTACATGGTTCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCCTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCGCTTTGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTGTGGTACATTACTACATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTTTCCCCAAGTTTTTAAACGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAATCTTGCTTTTGATTTCGTAGTTCAATTTTTGCCTTCCAACGATGGTACTTTGAGATTCATCTCTGTTAGTTCAGTGACTATTGATGACTGGCGTAGGGTCACTATTAGGTTATCCAAAGCGATTAAGCTGTATAGGATTTGAAGATACTTTTGAGAAATTTATACCCTGTTTTTTTCGGTCAAGATTATGAAATTGTTTGAATGTTGAGGAACCGCGTTTGCGTTCTTTAAGCTGGCATTTAAGGATGACTGTGAAGGAACTGTTAGGTCTTGTTGTGTGGTGTTGTAGGGAAGTGGTTCGAAAGGGACCTCTCCCTCATAATTATATGTTTAACATAATGATTCTTGGGTTTTGTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTGGCATAATACTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCACAAATGGCTGTAAATCTAGTATTGCTACTATCAGTTCCGTCATTGATGCCTTCTGCATGGGCTGGTAG

mRNA sequence

ATGGTCGGCCCAAAGTTCAACTGCTCAGGCCCATTTCGAAATATCGTCTTCCAGTTCTTGCTGACCGTACATGGTTCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCCTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCGCTTTGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTGTGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTGGCATAATACTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCACAAATGGCTGTAAATCTAGTATTGCTACTATCAGTTCCGTCATTGATGCCTTCTGCATGGGCTGGTAG

Coding sequence (CDS)

ATGGTCGGCCCAAAGTTCAACTGCTCAGGCCCATTTCGAAATATCGTCTTCCAGTTCTTGCTGACCGTACATGGTTCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCCTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCGCTTTGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTGTGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTGGCATAATACTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCACAAATGGCTGTAAATCTAGTATTGCTACTATCAGTTCCGTCATTGATGCCTTCTGCATGGGCTGGTAG

Protein sequence

MVGPKFNCSGPFRNIVFQFLLTVHGSLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELFCERLEHVTSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFCMGW
Homology
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BLAST of Carg06327 vs. NCBI nr
Match: XP_022974740.1 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0 

Query: 26  SLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELFCERLEHVTSKF 85
           SLSQFFPASVTR PPRNLRST GLNVSEK F+AALPYNVCQCASPTE+F ERLEHVTSKF
Sbjct: 3   SLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYERLEHVTSKF 62

Query: 86  SCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNGCKSSIATISSVIDAFCMG 140
           SCEPDVY HN+VINANCLKGQSSQALHWVNLMI NGCKSSIATISSVIDAFC G
Sbjct: 63  SCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANGCKSSIATISSVIDAFCRG 116

The following BLAST results are available for this feature:
BLAST of Carg06327 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022974740.11.7e-5291.23pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucur... [more]
BLAST of Carg06327 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg06327 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06327 vs. TrEMBL
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06327-RACarg06327-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 62..139
e-value: 1.4E-10
score: 43.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 89..137
e-value: 1.2E-8
score: 34.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06327MELO3C006272Melon (DHL92) v3.5.1carmeB0941
Carg06327CmaCh00G004680Cucurbita maxima (Rimu)carcmaB1316
Carg06327CmaCh06G011800Cucurbita maxima (Rimu)carcmaB1325
Carg06327MELO3C006272.2Melon (DHL92) v3.6.1carmedB0947
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg06327Silver-seed gourdcarcarB266
Carg06327Cucumber (Gy14) v1carcgyB1077
Carg06327Silver-seed gourdcarcarB549
Carg06327Silver-seed gourdcarcarB649
Carg06327Cucumber (Gy14) v2carcgybB0946
Carg06327Cucumber (Gy14) v2carcgybB0948
Carg06327Cucumber (Gy14) v1carcgyB1078
Carg06327Cucurbita maxima (Rimu)carcmaB1320
Carg06327Cucurbita maxima (Rimu)carcmaB1321
Carg06327Cucurbita moschata (Rifu)carcmoB1284
Carg06327Cucurbita moschata (Rifu)carcmoB1285
Carg06327Cucurbita moschata (Rifu)carcmoB1288
Carg06327Cucurbita moschata (Rifu)carcmoB1289
Carg06327Cucurbita pepo (Zucchini)carcpeB1328
Carg06327Cucurbita pepo (Zucchini)carcpeB1330
Carg06327Cucurbita pepo (Zucchini)carcpeB1331
Carg06327Cucurbita pepo (Zucchini)carcpeB1333
Carg06327Wild cucumber (PI 183967)carcpiB0998
Carg06327Wild cucumber (PI 183967)carcpiB0996
Carg06327Cucumber (Chinese Long) v2carcuB0975
Carg06327Cucumber (Chinese Long) v3carcucB1003
Carg06327Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06327Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06327Watermelon (Charleston Gray)carwcgB0935
Carg06327Watermelon (Charleston Gray)carwcgB0936
Carg06327Watermelon (97103) v1carwmB0961
Carg06327Watermelon (97103) v2carwmbB1008
Carg06327Watermelon (97103) v2carwmbB1009
Carg06327Wax gourdcarwgoB1118