Cp4.1LG08g02520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g02520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 2735040 .. 2741738 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTTCCCGCCTCTGTAACTTGCCGTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCTCTGCGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTATGGTACATTACTACATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTTTCCTCAAGTTTTTAAACGAGTATTGTTCGTCGTGTTCTTCGGATTTGGATAGTCTTGCATTTGATTACGTAGCTCAATTTTTTCCTTCCAACGACGGTACTTTGTGATTCATTTCTGAGTTCAGTGACTATTGATGACTGGCGTAGGGTCACTATTAGGTTATCCAAAGCGATTAAGCTGTATAGGATTTGAAGATACTTTTGAGAAATTTATACCCTGTTTTTTTGGTCAAGATTATGAAATTGTTTGAATGTTGAGGAACCGCGTTTGCGTTCTTAAGCTGGCATTTAAGGATGAGTGTGAAGGAACTGTTAGGTCTTGTTGTGTGGTGTTGTAGGGAAGTTGTTTAGGTATGTGGTTCGAAAGGGACCTCTCCCTCATAATTATATGTTTAACATAATGATTCTTGGGTTTTGTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATATTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGGGCTTCACTGGGTGAATTTGATGATCCCAAATGGCTGCAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGGGGAGGAGGGTGGATGGGGGTAGTTTAGTTATCTGGGAAACTTTTTGTTGAAATTGTAGATATGGGGATCAATTATTAAGGGATATATCTGTATCTGGTTTGCTTAACGATTCTTCACTATGTGATGTAACTGTCTCAGGACTGTGCATGGGCTTGTAGATACGATGAAACCATGATGTTTTTAGAGGATTTACTCGAGAAAGGATTTCCTCCAACTGGTTGCTTTTAATTCCATTCTTGCAGAATGCGGCAGTGCAAGTTTAGAAGAGAGAGCATTTTATGCCTATGGTACAGTGGCGAATTTGGTTTAACTCCTTCATCTTCCACGTGTAGTTCTTTGCTTATCAGCTAAGCTAGGAAGGGAACCTTGATGAAGCTAGGATAATTTTGTACGACATGATAGAGAAAGGATTCTCTGTCAATAACGTGGCTTTTACAGCTCTTTTGAATGGGTGCTTCAGGGCAGTAGATGTCATTACGGCTGAAAGTTTGTGGAATGAGATGAAGGGTAAGGGGTGTTTCCAGATGCAGTTGCATTTGCAGCTTTTATTTATGGGTTCTGTATGTCTGGTTTGATGAAGGATGCTTATGATATTGTGAGATCCCACATCGGTTGGAGAGGGGTATGAAACATTCTTTATAAAGTGTGAAAACCTCTTCCGAGTAGACACATTTTAAAAACCTTGAGGGGAAGTAAAAAAGGAAAGCCTAGAGTGGACAAGATCTGCTAGCGTTGGACTTGGGTTGTTATAACTGGTATCATAACTAGATACTGGGCAGTGTACCATTGAGGACGTTGGGGCCCGAAGGGCGGTGAACTGTGAGATCCCACATCGATTGGAGAGGGGAACGAAACATTCTTTATAAAGGTGTGGAAACCTCTTCCTAGTAGACGTGTTTTAAAACTTTGAAGGGAAGCCTGAAAAGGAAAGCCCAAAGAGAGCAATATTTTGTGTACAATTGGTGAAATCTGAAAAGTGGGAAAACCTAATATTTTTACGACAAACATGATAATTGGTGGGGAATGCAAACAAAGATAGACGAAGTTAGCCATTGGGACGTTCATGGACATGTATAAGATGGGTTTATCTCATGATATTGTCACTTACAGCACATTGATTAATGGTTACTGTAAAGTGACATGGGTAATGAAAATGTCAGATGGTAGGTGGGAACCTGATATAAGGACTTACAGTATACGAATTCATGGTTTCTGCACTGCCCGAAAAATCAAGTGGGCTGGGACGATACTTGAGGAGCTTATTTCAGCAGGGGTTGTTCCGACTACTGTAACATACAATACTATGATTACTGCTGTCCAGTGTCATCCTGGAACATGCTATGATGGATCATTAATTAGAGCATTCTTGTGCTCCATGAATCCTTATCCAAGATTTTTGTAATTTGATAGTGGCACGTGAATTAAACTCTTGAAGTTGAATGGCTGTTCCAATAAATTAGACTTAATGGAGCATGAAGCCAGCGAGAAATCTCATACTCCAAGTACTTAGAGAAGCTGCACAACAATTGATCCCAAGTTCCTGAGACGTCGACAAATAGAAGAATGTTCTTGGAGGATTCATCCTTTGAGGTAATAATTCGTAAAACTTGTCTCCAGTAGGAAAAACTCCAATTAATCTGCTGTTTTGATTTCTATATGGCTTTGGAGGAACCGTGATGTGTGAGTATTCTGATCTCTGTTTGGCTGATGTTGCGTAGGAATATATTATTTAGTAGCTTGGTGCATAATATAACCCTGTAACTTAACCCAGAACACCTTAGTTATATATATTTTTTACTCAGTTGACACATTCTATGGCAATGAAAGTTCATAGTTTGAATGTTCTTTTACTTGGTCTTAACACTTATTACTTGTTTGCCCGTTTTGCTGTATTTGTTTTGTCTATTGATTTCAACTTAGGCTGCCCATGTGAATGACTTTTTAGTCCCAAATCGCCATTGACCTATAAATTAGATATCATATAGGGTGAAAGCCAGTGATGAAACTGCAACTTGAATGTTGTTTTCATAGTAATTGAATTGTGAGATATATATATATTTTTATATATATGCTAGTGTTTGAGCCAGCATGTGCACACCTTAATTATTTTCACGGGACAACTGCATGACACATTTGTTTACCAAAGTAACTCATAAGATATTAAATCCTAGGTAGGTGGCTACTATGGCTAGAATCCATGAATGGAAAGTAGAGGTTAAATATTTATTTGTTTACTGTTTCCTTCCTTTCCTTTCATTGCGAAGGAATAAATAAATTGGCCTACTAGTCAAAATAATCAAATCCTAAGCCTAAGCTTAGATGTTTTTTAAGTTCAAACTATAGTGGTTATCCTATTTAAGATAAGATTTAAGTATATGATCTTCTTGAACATGTTTTGTTTTCCAAGTTATAGCTTGTATCCTTGAGTTCTAAGATATTAAATATCATTAAGAAAATATGTACGGGATCAAAAAAAAATTTATGAAAAAAAATTGTAGGATCCCTCTTGTTTATAAAAAAAAAAAAAGGTTATAGGATGCCATATTTAATTTAGTCCACTTGCAATTAACTTGACGCCTCACATTTATTAAAGAAAAGGGAGTTTGAAGAGGGAAAAGTGGGTACATCTCTCACTATCATCTTGACTAAGTAGATACAATATTAATGTTTAGTGATTATTAACGATTAAAATAATTTTGTTTAGAAATTGTGAGAATTTATTGCAGGTAGCATCTGTGAGATCCCACTTCGGTTGGAAAAGGGAACAAAACATTTCTTAAAAGGGTGTGGAAACCTCTCCCCCTAGCCGACGCGTTTTAAAACCGTGAGGCTGATGGCAATATAGAGTGGGCCAAAGCTTCGGCCTTCACAATACCTAAGTTTTTCAGGTGGATGAAGATGAAAGCCGCCCCACCATATCCTGTCAGTATCTATATCTATCTATATGATAATTTGTTTGTTTTCTGGGCCCCATAGGGCAAAAACTGAAGGATTTCAGACAATAGAGTATCATAACTCAAATAGACTATTTACATTAGCTTCTGTTCATCTCCTGCAGTAGAATTTCTATTTGGTGTCCTATGTTTGCTTTTCATTTCTTGATTGATATTCTGTTCTGCTCGTTTTCTTTGCTTTCAAAATTACAGCTTAGTCTATATACCAAAATCTGATTGTGAAAGTGTGAAAACAGCGTTTTAAGGCACTTTTGCTCTTTGCATTATCATAAATCTTCTTCTACTTGCACCCTCCACATGCTCTCCCAGTTTCTGCAGGTGGCTCATCCGCCTTCTCCACGAATCCATCACCTTCGTTTTCTCTGGTTCTCTTTCCATGTCGGGTTTGTTGTCGATGTTATCAGGACTTTTCTCGTAAGGCTCATTGTCGTCCTCAGCTTTAATGATCTGCTTCAATCTGTTTACTACTTCAGCCATTGAGGGCCTATCCTTCGCATTTTTCTCCAAGCAAGTGTTTGCTAACTTTGCTACTTTTCTAGCTGTATTGATGGGGTACTGGTTTTCGAGCCGAGGATCTATTATCGAACTAAACTTTTCGCTGTCTGGATTGATATATTTAACCCATTCCACAAGATTCTGTTCTGGTCTTGGATGATGTCTCTCCAATGATCGTCTCCCAGTTAAAATCTCATAAAGCACAACACCATAGCTCCATACATCACTTTTCGCTGTAAGATGGCCTGTCTTGATGTAGTCCGGAGCTGCATATCCATTAGTCCCCATCACCTGAGTGTTCATGATGTAGTTCATTGTGAGCATCTGTAAGTGATTAAAGGGAGAAGAACAAAAAAACAAACAAACACTTACTGCTGTTGAAACATGAGTGCGCCCAAATTCTGGCCCTTCCCTGGCAAGCCCAAAATCTGAAAGTTTTGGATGAAAATTTTCATCCAGTAGCACATTTGAACTCTTGAAATCTCTGTATATTATCTGTGCCACATTATAGAAGAACATGAGGGTAAATCTAGTCACAGCAAAAAGTGGTATGTTTGTGTATAACTATCTTGTTTAAATGCACACGCCCTCAAATTGAATTCTATTTGAGAAGATATGGGTACCTGAACTTCTAATCCTTCATGCAGATAAGCCAACCCCTGAGCTGCTCCAAGTACTATCTGCAATCTTGTTTTCCAAGCCAGTGTCGGTAGCGCCTTGTTGAAGAGATGATCTTCCAAGCTTCTGTTCGTCATATACTCGTATACGAGCAGTCTTTGTATTCCTCTTGTTCCATCCACAGCACAGTATCCTACGAGTTGGACAAGATTTGGATGCTCCACTATACCAAGAAATTGAACTTCTGCCAGCCACTGCTTGTGGCCCTATTTGCAAAATAGAAATGGTAAGTACAAAGAACAATCACTTCCTCATGAAAACTTGCCTTATTTTCCATAGGATTAAAGCTTAACGAATAGTAGTAATGATTTTCTGTTCTTGATGCATCTTATATGGAATGAATATAACCAGATCACCCAATCAGAATCTCCAACAAAGAGAAGAAATTCGCCCAATAAATTCAAAGAAAAACATACCTGTAAGCCATCCTTACTCAGTTGCTTGATAGCAACAACAAGGGGATCTCCCTTCCCATCAATGGGCTTAATTGAGCCTTTAAAGACACTCCCAAATCCCCCTTGTCCAATCTTAAGAAGCCTGTTGAAGTCATGTGTTGCCTCTCTCATCTCTGCAAATGAGAAAACTCTCAAATTATGTGCTTTCTCTTCATACAATTTAGGTACACTCCGAGTCGATGTTAGAGAGCACGAAGAAGCAGCCGTCCGACTGCATCCCGAAAAGTCAGATTCTAGCTCCCCTTTCAATTCAGGTGCGGATCTTTGATGCCTCCTACTCCTGGACTTGTTTTTGAAGTAGAAAAAGCACTTCATTTTCTATTAGATCTGGAAATTTGGCAATTCCCACGTTGTTTTGAGCCTCTGCAATTTATCCCCAGAAGAAATTTAATGCAGAAGCTTTCAGTTGTTTCTGATCTCAAAAGAACAGCTGAAAACACATCTTATAGAGATTGATACAAAAGCAAAAACAGAGGAAAAACCACAAGAACTATGATAGGAACGTTCTCGATGCCAGATTGAAAAACTCCGAGTACAGAACAGAAAGAAACAACAGCTGAAGGAGAAGAAGAAGGGAGAATGGGGAAACAAGGAGACAAAAGAAGACAATGGTGGAGAAAAGACTTGTTTGGTAATACTTGTACACAAAAAACAGACAAAAAGGGCGGCTCTTAGACTCTCTTACGGTGAGATCCCACATCGGTTAGAGAGGAGAACGAAACCCCCTTTATAAAGGCATGGAAACCTCTCCCTAGCACACGCGTTTTAGAAACCTTCTGCTAACGATGGGTTTGAGCTGTTACAAATGGTATTATAGCCAGGTTTCGATCTTGCGACCCGTGGGTTACTCTTTCCTTGTTCCTTGAAACAGTCCAAACAAAGATTTGTTAAACAGAAGCTTGAAGCTGGAAAGAAATTTGAGGAGCATTCTTTTTCTGACTTGTGCTTCTTGTTTCTTCTTGTTCTGCAGGAGATCGATGAGACCCAGATGGGATCAAGGGAAAGGGCCAATTTGTTGAGTCTGGCTTGAAGTTTCAAGTTCCATTTGAGCCTATGGGTACGTACAGTTGTTCTTGGTCGTAGCCTCTTTATGATCTCGTGATGTTTGGTGGGTGAACTGAATGAATGAATCAATGAATTTTACTGCTCTGTTTTGCTTTTTGGATGTCAAATAGTTGAAGATAGAAGCATGGTCAAAGGGGAACCCAAAGGATAGACAAAATTATGATTTTTTTCCATTAAATTGCAGATTTGACCATATAGTTCGGCTCGAGATCTCTCAAGCCCCTTGTTGTACCAATGTCTATATTCCGTTCTTAGG

mRNA sequence

TTCTTTCCCGCCTCTGTAACTTGCCGTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCTCTGCGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTATGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATATTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGGGCTTCACTGGGTGAATTTGATGATCCCAAATGGCTGCAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGGGGAGGAGGGTGGATGGGGGTAGTTTAGTTATCTGGGAAACTTTTTGTTGAAATTGTAGATATGGGGATCAATTATTAAGGGATATATCTGTATCTGGTTTGCTTAACGATTCTTCACTATGTGATGTAACTGTCTCAGGACTGTGCATGGGCTTGTAGATACGATGAAACCATGATGTTTTTAGAGGATTTACTCGAGAAAGGATTTCCTCCAACTGGTTGCTTTTAATTCCATTCTTGCAGAATGCGGCAGTGCAAGTTTAGAAGAGAGAGCATTTTATGCCTATGGTACAGTGGCGAATTTGGTTTAACTCCTTCATCTTCCACGTGTAGTTCTTTGCTTATCAGCTAAGCTAGGAAGGGAACCTTGATGAAGCTAGGATAATTTTGTACGACATGATAGAGAAAGGATTCTCTGTCAATAACGTGGCTTTTACAGCTCTTTTGAATGGGTGCTTCAGGGCAGTAGATGTCATTACGGCTGAAAGTTTGTGGAATGAGATGAAGGGTAAGGGGTGTTTCCAGATGCAGTTGCATTTGCAGCTTTTATTTATGGGTTCTGTATGTCTGGTTTGATGAAGGATGCTTATGATATTGTGAGATCCCACATCGGTTGGAGAGGGGTATGAAACATTCTTTATAAAGTGTGAAAACCTCTTCCGAGTAGACACATTTTAAAAACCTTGAGGGGAAGTAAAAAAGGAAAGCCTAGAGTGGACAAGATCTGCTAGCGTTGGACTTGGGTTGTTATAACTGGTATCATAACTAGATACTGGGCAGTGTACCATTGAGGACGTTGGGGCCCGAAGGGCGGTGAACTGTGAGATCCCACATCGATTGGAGAGGGGAACGAAACATTCTTTATAAAGGTGTGGAAACCTCTTCCTAGTAGACGTGTTTTAAAACTTTGAAGGGAAGCCTGAAAAGGAAAGCCCAAAGAGAGCAATATTTTGTGTACAATTGGTGAAATCTGAAAAGTGGGAAAACCTAATATTTTTACGACAAACATGATAATTGGTGGGGAATGCAAACAAAGATAGACGAAGTTAGCCATTGGGACGTTCATGGACATGTATAAGATGGGTTTATCTCATGATATTGTCACTTACAGCACATTGATTAATGGTTACTGTAAAGTGACATGGGTAATGAAAATGTCAGATGGTAGGTGGGAACCTGATATAAGGACTTACAGTATACGAATTCATGGTTTCTGCACTGCCCGAAAAATCAAGTGGGCTGGGACGATACTTGAGGAGCTTATTTCAGCAGGGGTTGTTCCGACTACTGTAACATACAATACTATGATTACTGCTGTCCAGTGTCATCCTGGAACATGCTATGATGGATCATTAATTAGAGCATTCTTGTGCTCCATGAATCCTTATCCAAGATTTTTGTAATTTGATAGTGGCACGTGAATTAAACTCTTGAAGTTGAATGGCTGTTCCAATAAATTAGACTTAATGGAGCATGAAGCCAGCGAGAAATCTCATACTCCAAGTACTTAGAGAAGCTGCACAACAATTGATCCCAAGTTCCTGAGACGTCGACAAATAGAAGAATGTTCTTGGAGGATTCATCCTTTGAGGTAGCATCTGTGAGATCCCACTTCGGTTGGAAAAGGGAACAAAACATTTCTTAAAAGGGTGTGGAAACCTCTCCCCCTAGCCGACGCGTTTTAAAACCGTGAGGCTGATGGCAATATAGAGTGGGCCAAAGCTTCGGCCTTCACAATACCTAAGTTTTTCAGGTGGATGAAGATGAAAGCCGCCCCACCATATCCTATAAGCCAACCCCTGAGCTGCTCCAAGTACTATCTGCAATCTTGTTTTCCAAGCCAGTGTCGGTAGCGCCTTGTTGAAGAGATGATCTTCCAAGCTTCTGTTCGTCATATACTCGTATACGAGCAGTCTTTGTATTCCTCTTGTTCCATCCACAGCACAGTATCCTACGAGTTGGACAAGATTTGGATGCTCCACTATACCAAGAAATTGAACTTCTGCCAGCCACTGCTTGTGGCCCTATTTGCAAAATAGAAATGGTACACTCCGAGTCGATGTTAGAGAGCACGAAGAAGCAGCCGTCCGACTGCATCCCGAAAAGTCAGATTCTAGCTCCCCTTTCAATTCAGGTGCGGATCTTTGATGCCTCCTACTCCTGGACTTGTTTTTGAAGTAGAAAAAGCACTTCATTTTCTATTAGATCTGGAAATTTGGCAATTCCCACGTTGTTTTGAGCCTCTGCAATTTATCCCCAGAAGAAATTTAATGCAGAAGCTTTCAGTTGTTTCTGATCTCAAAAGAACAGCTGAAAACACATCTTATAGAGATTGATACAAAAGCAAAAACAGAGGAAAAACCACAAGAACTATGATAGGAACGTTCTCGATGCCAGATTGAAAAACTCCGAGTACAGAACAGAAAGAAACAACAGCTGAAGGAGAAGAAGAAGGGAGAATGGGGAAACAAGGAGACAAAAGAAGACAATGGTGGAGAAAAGACTTGTTTGGTAATACTTGTACACAAAAAACAGACAAAAAGGGCGGCTCTTAGACTCTCTTACGGTGAGATCCCACATCGGTTAGAGAGGAGAACGAAACCCCCTTTATAAAGGCATGGAAACCTCTCCCTAGCACACGCGTTTTAGAAACCTTCTGCTAACGATGGGTTTGAGCTGTTACAAATGGTATTATAGCCAGGTTTCGATCTTGCGACCCGTGGGTTACTCTTTCCTTGTTCCTTGAAACAGTCCAAACAAAGATTTGTTAAACAGAAGCTTGAAGCTGGAAAGAAATTTGAGGAGCATTCTTTTTCTGACTTGTGCTTCTTGTTTCTTCTTGTTCTGCAGGAGATCGATGAGACCCAGATGGGATCAAGGGAAAGGGCCAATTTGTTGAGTCTGGCTTGAAGTTTCAAGTTCCATTTGAGCCTATGGGTACGTACAGTTGTTCTTGGTCGTAGCCTCTTTATGATCTCGTGATGTTTGGTGGGTGAACTGAATGAATGAATCAATGAATTTTACTGCTCTGTTTTGCTTTTTGGATGTCAAATAGTTGAAGATAGAAGCATGGTCAAAGGGGAACCCAAAGGATAGACAAAATTATGATTTTTTTCCATTAAATTGCAGATTTGACCATATAGTTCGGCTCGAGATCTCTCAAGCCCCTTGTTGTACCAATGTCTATATTCCGTTCTTAGG

Coding sequence (CDS)

TTCTTTCCCGCCTCTGTAACTTGCCGTCCGCCGCGTAATCTCCGATCAACCTACGGGTTGAATGTAAGTGAAAAGCTCTGCGAAGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAACTCTTTTATGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATATTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGGGCTTCACTGGGTGAATTTGATGATCCCAAATGGCTGCAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGGGGAGGAGGGTGGATGGGGGTAGTTTAG

Protein sequence

FFPASVTCRPPRNLRSTYGLNVSEKLCEAALPYNVCQCASPTELFYERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDAFCRGGGWMGVV
Homology
[Close]
BLAST of Cp4.1LG08g02520 vs. TrEMBL
Match: A0A0A0L7U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L HV  KF CEPDVYS+NIVINANCLKGQSS  LH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 107 FCRGG 112
           FC+ G
Sbjct: 337 FCKEG 341

[Close]
BLAST of Cp4.1LG08g02520 vs. TrEMBL
Match: M5XKW6_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021344mg PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L HV  KF C+PDV ++NIVINANC++GQ+   LHWV+LM    CK SI T S++++A
Sbjct: 76  ESLLHVMWKFQCDPDVIAYNIVINANCVRGQTLDALHWVHLMTSRACKPSIVTFSTILNA 135

Query: 107 FCRGG 112
            C+ G
Sbjct: 136 LCKEG 140

[Close]
BLAST of Cp4.1LG08g02520 vs. TrEMBL
Match: A0A022RMZ3_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025391mg PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 7.5e-12
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L  V  K+ CEPDV+++NI+INA C++G S   L WV++M+ NGCK S AT S+VI+A
Sbjct: 277 ESLLCVMGKYGCEPDVHTYNILINAYCVRGWSWDALDWVDVMVENGCKPSSATFSTVINA 336

Query: 107 FCRGG 112
           FC+ G
Sbjct: 337 FCKEG 341

[Close]
BLAST of Cp4.1LG08g02520 vs. TrEMBL
Match: M0ZN46_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001689 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.8e-12
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L H+  KF CEPDV+++NI+INA C+ G +S  L WV++M+ +GC+ +I+T S+VI+A
Sbjct: 76  ESLFHLMRKFGCEPDVFTYNILINAYCIGGWTSDALKWVHMMVEHGCRPTISTFSTVINA 135

Query: 107 FCRGG 112
            C+ G
Sbjct: 136 LCKEG 140

[Close]
BLAST of Cp4.1LG08g02520 vs. TrEMBL
Match: M0ZN47_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001689 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.8e-12
Identity = 32/65 (49.23%), Postives = 49/65 (75.38%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L H+  KF CEPDV+++NI+INA C+ G +S  L WV++M+ +GC+ +I+T S+VI+A
Sbjct: 169 ESLFHLMRKFGCEPDVFTYNILINAYCIGGWTSDALKWVHMMVEHGCRPTISTFSTVINA 228

Query: 107 FCRGG 112
            C+ G
Sbjct: 229 LCKEG 233

[Close]
BLAST of Cp4.1LG08g02520 vs. NCBI nr
Match: gi|778677688|ref|XP_011650837.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L HV  KF CEPDVYS+NIVINANCLKGQSS  LH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 107 FCRGG 112
           FC+ G
Sbjct: 337 FCKEG 341

[Close]
BLAST of Cp4.1LG08g02520 vs. NCBI nr
Match: gi|700201554|gb|KGN56687.1| (hypothetical protein Csa_3G128950 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L HV  KF CEPDVYS+NIVINANCLKGQSS  LH +NLMI NGCK SIAT  ++IDA
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDA 336

Query: 107 FCRGG 112
           FC+ G
Sbjct: 337 FCKEG 341

[Close]
BLAST of Cp4.1LG08g02520 vs. NCBI nr
Match: gi|659075696|ref|XP_008438280.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L HV  KF CEPDVYS+NIVI+ANCLKGQSS  LH VNLMI N CK SIAT  ++IDA
Sbjct: 275 EALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDA 334

Query: 107 FCRGG 112
           FC+ G
Sbjct: 335 FCKEG 339

[Close]
BLAST of Cp4.1LG08g02520 vs. NCBI nr
Match: gi|698525351|ref|XP_009759491.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g12620-like [Nicotiana sylvestris])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L H+  KF CEPDV+++NI+INA C++G +S  LHWV++MI +GC  SI+T S+VI+A
Sbjct: 296 ESLCHLMRKFGCEPDVFTYNILINAYCIRGWTSDALHWVHMMIDHGCNPSISTFSTVINA 355

Query: 107 FCRGGGWM 115
            C+ G  M
Sbjct: 356 LCKEGNMM 363

[Close]
BLAST of Cp4.1LG08g02520 vs. NCBI nr
Match: gi|697171673|ref|XP_009594766.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Nicotiana tomentosiformis])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 47  ERLEHVTSKFSCEPDVYSHNIVINANCLKGQSSQGLHWVNLMIPNGCKSSIATISSVIDA 106
           E L H+  KF CEPDV+++NI+INA C++G +S  LHWV++MI +GC  SI+T S+VI+A
Sbjct: 333 ESLCHLMRKFGCEPDVFTYNILINAYCIRGWTSDALHWVHMMIDHGCNPSISTFSTVINA 392

Query: 107 FCRGGGWM 115
            C+ G  M
Sbjct: 393 LCKEGNMM 400

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g02520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g02520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7U2_CUCSA1.4e-1872.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128950 PE=4 SV=1[more]
M5XKW6_PRUPE5.2e-1353.85Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021344mg PE=4 S... [more]
A0A022RMZ3_ERYGU7.5e-1253.85Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025391mg... [more]
M0ZN46_SOLTU9.8e-1249.23Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001689 PE=4 SV=1[more]
M0ZN47_SOLTU9.8e-1249.23Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001689 PE=4 SV=1[more]
BLAST of Cp4.1LG08g02520 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g02520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677688|ref|XP_011650837.1|2.0e-1872.31PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis s... [more]
gi|700201554|gb|KGN56687.1|2.0e-1872.31hypothetical protein Csa_3G128950 [Cucumis sativus][more]
gi|659075696|ref|XP_008438280.1|2.2e-1770.77PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-... [more]
gi|698525351|ref|XP_009759491.1|1.1e-1352.94PREDICTED: pentatricopeptide repeat-containing protein At1g12620-like [Nicotiana... [more]
gi|697171673|ref|XP_009594766.1|1.1e-1352.94PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Nicotiana... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g02520.1Cp4.1LG08g02520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 60..109
score: 1.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 47..111
score: 7.5
NoneNo IPR availablePANTHERPTHR24015:SF892SUBFAMILY NOT NAMEDcoord: 47..111
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g02520CmaCh00G004680Cucurbita maxima (Rimu)cmacpeB018
Cp4.1LG08g02520CsaV3_3G010510Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g02520Bhi01G000122Wax gourdcpewgoB1111
Cp4.1LG08g02520Carg14893Silver-seed gourdcarcpeB0885
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g02520Cp4.1LG03g17630Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g02520Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g02520Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g02520Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g02520Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g02520Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g02520Watermelon (97103) v1cpewmB845
Cp4.1LG08g02520Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g02520Cucumber (Gy14) v2cgybcpeB279
Cp4.1LG08g02520Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g02520Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g02520Silver-seed gourdcarcpeB0329
Cp4.1LG08g02520Silver-seed gourdcarcpeB1333
Cp4.1LG08g02520Silver-seed gourdcarcpeB1507
Cp4.1LG08g02520Cucumber (Chinese Long) v3cpecucB1046
Cp4.1LG08g02520Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g02520Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g02520Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g02520Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g02520Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g02520Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g02520Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g02520Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g02520Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g02520Wild cucumber (PI 183967)cpecpiB861