Cla97C11G207110 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G207110
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Small nuclear ribonucleoprotein f, putative
Location	Cla97Chr11 : 1000041 .. 1001763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCTTCTACTTTTCTTTTGCCTTGGTCCTTGGATAACTCTCTACCTGTTCTATTTGGTATTTTATTCTCAGAATTGTATCATTACTTTTAAGAATCTGTAGAAGTTCAGGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTTTTTTTGTTCACAAATCTTCCTTATTGACAAATGGTGTCATTAATCAACCCTTTTTTCGTTACTTTTAAGAATATTTAGACATTGAGGGAAAACAACACTTGGAAATGTTGAGGCACTATCCTTTTTTTGTTCATGAATCTTCCTTGTTAACAAATGGTGTCATTAGTCAACCCTTTTTATTTCCCTATAATCTCTTTCTTATGACCTTTGGACATTGTATGTACCATTCCATATGTTGTACAATTGTGTCCTTGAGTTCATATGATCTCTTTATCAATTCTTTGTTCTTCAAACTTGACTTGTTTGTAATTTTTTTTAACATAAACCGAGCTTTCATGGAGAAAAAGTGAAAGGATACAAAAGAGGCACAACAAAGTGCCCAAAAAGCTGAGCCAAAGATAAGACCTATTGGTGCCCACATATTCGTTACAGAAGTTCTTTGAAATTGAAAGTCCATGAAACTTAGCGAGAGTTTAGTAATGTAGGGAAGTTGTTATTGTGATTTGTTATGAATAGTCGGTTGGAAATGGTAAAGGTATGGATTGATTTAGTTGGCTCAACTCTCAAGTTTGAGTGGAGGGTTCAAGTTCCTCAAATTACTTGTATTCCACTCTTCCTTCATCTTTATCTTTCATTACTATTTTAGCTATTATTTTTGGTTCTATCACAATCACTGTTATGGCTATGCACACACCAAAAGTCTCCAGAATACGAAGGGGATTCTCACCACCAAGCAACCCAGAAATAGGTGTTTGAACCATCCCTGACAGCAATTAACTGGAGAAAAAGGGGGATCACCCAAAGAGATGGCTTTCCAAGGGTTCTTGAAAGTCCCTTTCAACCCTCTTCCCAAGGTTCATTCGAAGGGTGAGGGCCAAGGCGAAGTATTCAACTCCAAAGGAAAACACCACAACCATTTAGCCAAAACACCTCACTACAAATCCTCAAATTGCCAATACCCAACCCTAAACTCAATAGGTCTCATAACCCTCTCCCAGCTAACCAAATCTGAGCTGCCCCTCCCGTCAACACCCTACCATAGGAAATATGAACAATTTCTTTCACAAATGTTGTTTTGATTTTAAACATGACCATTTATTGTCCTTTGTATAGGACCTTTATCTTTTCTTGTGCAGTATAACTGTTGAAAACCGGATAAAATCTATGTTGAATTCTAATGTGAAGATCCCATTTGTTTCATTGTATAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGACGCTTTTATCCGCGGAAATAACGGTAGATATTGAAATAGCTTTGATAATCTCATCATCTTTTGTTGACTCTTGAGAATAATTTTAAGACTCGATTTGTTAATGCAGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCATCTTAG

mRNA sequence

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGACGCTTTTATCCGCGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCATCTTAG

Coding sequence (CDS)

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCCGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAGACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGACGCTTTTATCCGCGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCATCTTAG

Protein sequence

MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

Homology

[Close]

BLAST of Cla97C11G207110 vs. NCBI nr
Match: XP_004140401.1 (PREDICTED: sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like protein LSM36B [Cucumis melo] >XP_011655091.1 PREDICTED: sm-like protein LSM36B [Cucumis sativus] >XP_022155112.1 sm-like protein LSM36B [Momordica charantia] >KGN50806.1 hypothetical protein Csa_5G266840 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 7.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cla97C11G207110 vs. NCBI nr
Match: XP_022942809.1 (U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942811.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_023513637.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513644.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513651.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.1 bits (466), Expect = 2.1e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cla97C11G207110 vs. NCBI nr
Match: XP_022942160.1 (sm-like protein LSM36B isoform X1 [Cucurbita moschata])

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cla97C11G207110 vs. NCBI nr
Match: XP_022988243.1 (uncharacterized protein LOC111485552 [Cucurbita maxima])

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of Cla97C11G207110 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of Cla97C11G207110 vs. TrEMBL
Match: tr|A0A1S3CBJ6|A0A1S3CBJ6_CUCME (sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cla97C11G207110 vs. TrEMBL
Match: tr|A0A0A0KSS9|A0A0A0KSS9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cla97C11G207110 vs. TrEMBL
Match: tr|D7T2I1|D7T2I1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0094g00940 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.0e-42
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]

BLAST of Cla97C11G207110 vs. TrEMBL
Match: tr|A9PAM0|A9PAM0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G078400v3 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Cla97C11G207110 vs. TrEMBL
Match: tr|V4TUF1|V4TUF1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023071mg PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.5e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Cla97C11G207110 vs. Swiss-Prot
Match: sp|O22823|LSM6B_ARATH (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-38
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cla97C11G207110 vs. Swiss-Prot
Match: sp|Q9M1Z3|LSM6A_ARATH (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-37
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Cla97C11G207110 vs. Swiss-Prot
Match: sp|P62312|LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Cla97C11G207110 vs. Swiss-Prot
Match: sp|P62313|LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Cla97C11G207110 vs. Swiss-Prot
Match: sp|A8NHT8|LSM6_COPC7 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=LSM6 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
          T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAF
Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80

Query: 72 IRGNNVLYISTSK 85
          IRGNNVLYIS  +
Sbjct: 81 IRGNNVLYISADE 93

[Close]

BLAST of Cla97C11G207110 vs. TAIR10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 160.2 bits (404), Expect = 6.0e-40
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cla97C11G207110 vs. TAIR10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Cla97C11G207110 vs. TAIR10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
          P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 75 NNVLYI 81
          NNVLY+
Sbjct: 76 NNVLYV 81

[Close]

BLAST of Cla97C11G207110 vs. TAIR10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-09
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 81
          ++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46

The following BLAST results are available for this feature:

BLAST of Cla97C11G207110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140401.1	7.3e-44	100.00	PREDICTED: sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: s...	[more]
XP_022942809.1	2.1e-43	98.91	U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6...	[more]
XP_022942160.1	2.8e-43	98.91	sm-like protein LSM36B isoform X1 [Cucurbita moschata]	[more]
XP_022988243.1	2.8e-43	98.91	uncharacterized protein LOC111485552 [Cucurbita maxima]	[more]
XP_023539899.1	2.8e-43	98.91	uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C11G207110 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CBJ6\|A0A1S3CBJ6_CUCME	4.8e-44	100.00	sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1	[more]
tr\|A0A0A0KSS9\|A0A0A0KSS9_CUCSA	4.8e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1	[more]
tr\|D7T2I1\|D7T2I1_VITVI	2.0e-42	96.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0094g00940 PE=3 SV=...	[more]
tr\|A9PAM0\|A9PAM0_POPTR	4.5e-42	95.60	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G078400v3 PE=...	[more]
tr\|V4TUF1\|V4TUF1_9ROSI	4.5e-42	95.60	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023071mg PE=3 ...	[more]

BLAST of Cla97C11G207110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22823\|LSM6B_ARATH	1.1e-38	84.62	Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1	[more]
sp\|Q9M1Z3\|LSM6A_ARATH	3.5e-37	87.21	Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1	[more]
sp\|P62312\|LSM6_HUMAN	3.0e-33	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV...	[more]
sp\|P62313\|LSM6_MOUSE	3.0e-33	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 S...	[more]
sp\|A8NHT8\|LSM6_COPC7	3.0e-25	73.97	U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-...	[more]

BLAST of Cla97C11G207110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43810.1	6.0e-40	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	1.9e-38	87.21	Small nuclear ribonucleoprotein family protein	[more]
AT4G30220.2	1.1e-14	48.48	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	7.1e-09	50.00	Small nuclear ribonucleoprotein family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005732	small nucleolar ribonucleoprotein complex

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR016487	Lsm6/sSmF
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008380	RNA splicing
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G207110.1	Cla97C11G207110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 17..82 e-value: 7.8E-21 score: 85.2
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 17..81 e-value: 1.5E-18 score: 66.2
IPR016487	Sm-like protein Lsm6/SmF	PIRSF	PIRSF006609	snRNP_SmF	coord: 7..90 e-value: 1.1E-22 score: 77.7
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 10..88
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 5..85 e-value: 5.8E-32 score: 111.0
None	No IPR available	CDD	cd01726	LSm6	coord: 14..81 e-value: 1.9695E-43 score: 136.497
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 14..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C11G207110	Csa5G266840	Cucumber (Chinese Long) v2	cuwmbB361
Cla97C11G207110	MELO3C022586	Melon (DHL92) v3.5.1	mewmbB048
Cla97C11G207110	ClCG11G000770	Watermelon (Charleston Gray)	wcgwmbB065
Cla97C11G207110	CSPI05G12080	Wild cucumber (PI 183967)	cpiwmbB378
Cla97C11G207110	Cucsa.277300	Cucumber (Gy14) v1	cgywmbB482
Cla97C11G207110	CmaCh04G009730	Cucurbita maxima (Rimu)	cmawmbB732
Cla97C11G207110	CmoCh04G000090	Cucurbita moschata (Rifu)	cmowmbB703
Cla97C11G207110	CmoCh04G010500	Cucurbita moschata (Rifu)	cmowmbB704
Cla97C11G207110	Lsi11G000300	Bottle gourd (USVL1VR-Ls)	lsiwmbB079
Cla97C11G207110	CsGy5G009400	Cucumber (Gy14) v2	cgybwmbB342
Cla97C11G207110	MELO3C022586.2	Melon (DHL92) v3.6.1	medwmbB044
Cla97C11G207110	Carg00090	Silver-seed gourd	carwmbB0690
Cla97C11G207110	Carg27074	Silver-seed gourd	carwmbB0771
Cla97C11G207110	CsaV3_5G012480	Cucumber (Chinese Long) v3	cucwmbB375

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C11G207110	Cucurbita maxima (Rimu)	cmawmbB730
Cla97C11G207110	Cucumber (Chinese Long) v3	cucwmbB376
Cla97C11G207110	Cucumber (Chinese Long) v2	cuwmbB362
Cla97C11G207110	Watermelon (Charleston Gray)	wcgwmbB066
Cla97C11G207110	Watermelon (97103) v1	wmwmbB361
Cla97C11G207110	Watermelon (97103) v1	wmwmbB366