Carg00090 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00090
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U6 snRNA-associated Sm-like protein LSm6
Location	Cucurbita_argyrosperma_scaffold_001 : 391674 .. 394411 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTGAGGTTCATAAACCGTGATGTTAACAAGGACACAGAACCTTTTTCATTTTCTAGCTTTGTCATCATCGTTCTTTTGTGAATACTCTTTACTGTGTAGATATTCTTACCTCAGTGGTTTCTCATTTTCATTTTTGGTACGTGTAGAATTATCCGTCTGTCTTATCCGTTGACTATGGGGGCATGGTCATTTGATTATGTAGTCTGCTTGGTGATAATAGCTCTTTAATTTTTTTATGTTGTTTGATGGTGTTGAATAAATTCGATTACTAATATCTGATTAGGTATAAAAAGTAGGTTGTGCAGATAGAAGGAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGTGTCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCTGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATATTTGCCTGTTCAATTTTGTTTCATTTTTATGCTAAGAGTTGTATCGTTACTTCTAAGAAATTACCTGCAAATGGAGGCTCTTTTTTTTTTTTTTTTTTGGTTCATCAATCTTCCTTGTTGACAAAATGGCGTCATTTGTCAACTTATTTTTTTGTCCTTTCATATCTTCTCTTTCTTATGACCTTAATTCAACGTTGTGTCTTCCATACGTTGTACTGCTTCCTTCCGTTCATATATTCTCTTTATCAATTTCTTGTTCTTCAAATCTGACTTGCTTGTAAAAGATGACTTTTTAATAGAAACTGAGCTCCGGAAATGAAGGAAAAAAAAAAATGAAGGAATAAAAAATATGCATACAAATAAGTGCCCAAAAAGTGGAGCTGAAGTCAAAACTTAATGCCTTGGTAGAAAGGGTCCAATCCAAAATAATTAGAGAATCTTTTGAAATTGACATTCTCCCACTAGAGTATGCTTGAGACAGACGCCTAGAGAGAGGCATTAAACATGCCAAGAGCCTTCACATCTCCTAACATCTTCCCAAGATCTGTCAATCCCTCCAAAAAATCTCTTATTTTTCTTCAACTAAAATGCTCCATAGAATAGGCAATAAACCAGTCTGTGGAAGCTTGCAACCCTTATCTCGAAAAGGCAGATGGAGGTCTCCTCCATGATGAGGCAACAATCTGAGAGGAATGTTGGGAGACAATCTTCATGGCAAGCCAACAAGTGTACTTTGGGTGTGGCGATTGTAGGAGAGAGGAACAATAGGATCTTTAGCATTATATGTAGCATGACCGTAAGGATGTTTAGTCTCTTGTTTTTCTCTGAACATTTGTGTCCTGTACTTTTTTAAAAAAAAAAAATTAATATTTAGGTCTTATTTTGCTTGATTGGAGTCCCTTTTGTGGGATTTTATGTGTAGCATGACAGTAAGGATGTCCTTGTCTTCTTTCACTTTTTCCCAGGAAAATGTGATTCATTTTAAAAATCAAAATCTGATAGAAATGTTATTAGGAATATTATTTGGACATCAAGGTATATATAGTGGGGGTGGGAAATAGTAAAGATATTTATGGGTTGATTTCGTTGTCTCAAGTTTGAGTGGAGGGTCCAAGTAGGCCTAATTAGTCGGGAGTTATTGTATTCCTCATCTTTCAGTACTATTTTAGCTATTTGGGTTCTACCACAACCACTGTCATGGCCATGCACACACGAAAAGTCTCCAATAGAGTTCCAAATCCTGATATCATACTTGGAACCCTAAAGAATATGACCCAAATCCTTAGACACACCTCCTTGGCAAGAATGCATAAATGAATTGAATAACGTGCCCAAGAAATGATTGAAGAAATGGGGAACGACCACAAAGAGGAAAGCTGGTACAAACAACAAAACAAGTTACCAAGGGGATTCTCACCACCAAGGAAATAGGTGTTTGAACAATTCTTAGATGAAGCAATTAATGAAATTGTAGAAAAAGGGACCACTCCCAAAGAGATGGATTTTTTAGGGTTCTTGAAAGTGCACCCAACCCTTTCCCTGAGGTTCGTTCGAAAGGTCGAGGGTCATAAGTGCTTATTATAAACATTACGCTACCAAGTACTTGCCCCAAAGGAAACTATTTAGCCAGAAAGCCTCATTATGAATCCTCAAATTGCTGACCTAACCCTCCAAACTCAATGTCTTATAACACTCTCCCGACTAACCAAATATGAACCGCCCCCTTTTCATCACTCCCACAAGAAACATGAACATTTGTTTGACAAATGATTTGATTTTAAACATGATCGTTTGTCCTCCTTTGTATTTGAAAAACAGGTAAAATTTATATTGAATTCTAATGTGAAAATCCCATTATATGTTTCATTGCAAAGGTATTCTTGCCTGTCTGGATGGATACATGAACATAGCAATGGAGCAGACCGAAGAATACGTAAATGGGCAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGGTAAATACAGTAGTCTTTGAAAATCTCGATGTCTTGAGAATAGTCTGAACTTTGATGTCTTAATGCAGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCTTCTTAGCGTGTAGCTAAGACTCCCGACGGGAAATGCCACATCCTTTGCAGTACGTGATGTTCCTTCCTTCAGTCTCATGCTGTAAAGTGAGAGATCAATCGGAATTGGAAACTCATCATTGAAATTGTAATGTACAATGACGTAGAATCCACCCATGGCGCTATGCTGTTCTTGTTCTTGTGAACAACTTCGAT

mRNA sequence

GATTGAGGTTCATAAACCGTGATGTTAACAAGGACACAGAACCTTTTTCATTTTCTAGCTTTGTCATCATCATATTCTTACCTCAGTGGTTTCTCATTTTCATTTTTGGTACGTGTAGAATTATCCGTCTGTCTTATCCGTTGACTATGGGGGCATGGTCATTTGATTATGTAGTCTGCTTGGTGATAATAGCTCTTTAATTTTTTTATGTTGTTTGATGGTGTTGAATAAATTCGATTACTAATATCTGATTAGGTATAAAAAGTAGGTTGTGCAGATAGAAGGAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGTGTCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCTGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATTCTTGCCTGTCTGGATGGATACATGAACATAGCAATGGAGCAGACCGAAGAATACGTAAATGGGCAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCTTCTTAGCGTGTAGCTAAGACTCCCGACGGGAAATGCCACATCCTTTGCAGTACGTGATGTTCCTTCCTTCAGTCTCATGCTGTAAAGTGAGAGATCAATCGGAATTGGAAACTCATCATTGAAATTGTAATGTACAATGACGTAGAATCCACCCATGGCGCTATGCTGTTCTTGTTCTTGTGAACAACTTCGAT

Coding sequence (CDS)

ATGAGTATTGGTGGTGAAAAAGGTTCTGTGTCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCGTCCTGTAGTTGTGAAACTCAATTCTGGTGTTGACTACCGAGGTATTCTTGCCTGTCTGGATGGATACATGAACATAGCAATGGAGCAGACCGAAGAATACGTAAATGGGCAGTTGAAAAACAAATATGGCGATGCTTTCATCCGTGGAAATAACGTTCTGTACATCAGTACTTCGAAGAGGACATTAGCAGAAGGGTCTTCTTAG

Protein sequence

MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS

Homology

[Close]

BLAST of Carg00090 vs. NCBI nr
Match: XP_022942809.1 (U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942811.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_023513637.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513644.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo] >XP_023513651.1 U6 snRNA-associated Sm-like protein LSm6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.0 bits (471), Expect = 5.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Carg00090 vs. NCBI nr
Match: XP_004140401.1 (PREDICTED: sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: sm-like protein LSM36B [Cucumis melo] >XP_011655091.1 PREDICTED: sm-like protein LSM36B [Cucumis sativus] >XP_022155112.1 sm-like protein LSM36B [Momordica charantia] >KGN50806.1 hypothetical protein Csa_5G266840 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Carg00090 vs. NCBI nr
Match: XP_022942160.1 (sm-like protein LSM36B isoform X1 [Cucurbita moschata])

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Carg00090 vs. NCBI nr
Match: XP_022988243.1 (uncharacterized protein LOC111485552 [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1   MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGS STKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of Carg00090 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.6 bits (462), Expect = 6.2e-43
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1   MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MSIGGEKGS STKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 93  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 152

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 153 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 184

[Close]

BLAST of Carg00090 vs. TAIR10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-39
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Carg00090 vs. TAIR10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 6  EKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Carg00090 vs. TAIR10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
          P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 75 NNVLYI 81
          NNVLY+
Sbjct: 76 NNVLYV 81

[Close]

BLAST of Carg00090 vs. TAIR10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.1e-09
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 81
          ++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46

[Close]

BLAST of Carg00090 vs. Swiss-Prot
Match: sp|O22823|LSM6B_ARATH (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-38
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Carg00090 vs. Swiss-Prot
Match: sp|Q9M1Z3|LSM6A_ARATH (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.9e-37
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 6  EKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Carg00090 vs. Swiss-Prot
Match: sp|P62312|LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 9  SVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S+  +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Carg00090 vs. Swiss-Prot
Match: sp|P62313|LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 9  SVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S+  +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Carg00090 vs. Swiss-Prot
Match: sp|A8NHT8|LSM6_COPC7 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=LSM6 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
          T +P DFLK + G+ VVV+L SGVDYRGIL+CLDGYMNIAMEQTEE VNG++ N+YGDAF
Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80

Query: 72 IRGNNVLYISTSK 85
          IRGNNVLYIS  +
Sbjct: 81 IRGNNVLYISADE 93

[Close]

BLAST of Carg00090 vs. TrEMBL
Match: tr|A0A1S3CBJ6|A0A1S3CBJ6_CUCME (sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Carg00090 vs. TrEMBL
Match: tr|A0A0A0KSS9|A0A0A0KSS9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGS STKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Carg00090 vs. TrEMBL
Match: tr|D7T2I1|D7T2I1_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0094g00940 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.9e-42
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGS +TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]

BLAST of Carg00090 vs. TrEMBL
Match: tr|A9PAM0|A9PAM0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G078400v3 PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-41
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGS +TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Carg00090 vs. TrEMBL
Match: tr|A0A251JK31|A0A251JK31_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G001100 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-41
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSIGGEKGSVSTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGS +TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

The following BLAST results are available for this feature:

BLAST of Carg00090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942809.1	5.6e-44	100.00	U6 snRNA-associated Sm-like protein LSm6 [Cucurbita moschata] >XP_022942810.1 U6...	[more]
XP_004140401.1	1.6e-43	98.91	PREDICTED: sm-like protein LSM36B [Cucumis sativus] >XP_008460221.1 PREDICTED: s...	[more]
XP_022942160.1	6.2e-43	97.83	sm-like protein LSM36B isoform X1 [Cucurbita moschata]	[more]
XP_022988243.1	6.2e-43	97.83	uncharacterized protein LOC111485552 [Cucurbita maxima]	[more]
XP_023539899.1	6.2e-43	97.83	uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43810.1	1.3e-39	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	3.3e-38	87.21	Small nuclear ribonucleoprotein family protein	[more]
AT4G30220.2	1.1e-14	48.48	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	7.1e-09	50.00	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Carg00090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22823\|LSM6B_ARATH	2.4e-38	84.62	Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1	[more]
sp\|Q9M1Z3\|LSM6A_ARATH	5.9e-37	87.21	Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1	[more]
sp\|P62312\|LSM6_HUMAN	1.8e-33	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV...	[more]
sp\|P62313\|LSM6_MOUSE	1.8e-33	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 S...	[more]
sp\|A8NHT8\|LSM6_COPC7	3.0e-25	73.97	U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-...	[more]

BLAST of Carg00090 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CBJ6\|A0A1S3CBJ6_CUCME	1.1e-43	98.91	sm-like protein LSM36B OS=Cucumis melo OX=3656 GN=LOC103499106 PE=3 SV=1	[more]
tr\|A0A0A0KSS9\|A0A0A0KSS9_CUCSA	1.1e-43	98.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1	[more]
tr\|D7T2I1\|D7T2I1_VITVI	5.9e-42	95.60	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0094g00940 PE=3 SV=...	[more]
tr\|A9PAM0\|A9PAM0_POPTR	1.3e-41	94.51	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G078400v3 PE=...	[more]
tr\|A0A251JK31\|A0A251JK31_MANES	1.3e-41	94.51	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G001100 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005732	small nucleolar ribonucleoprotein complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR016487	Lsm6/sSmF
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00090-RA	Carg00090-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 17..82 e-value: 7.8E-21 score: 85.2
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 17..81 e-value: 1.5E-18 score: 66.2
IPR016487	Sm-like protein Lsm6/SmF	PIRSF	PIRSF006609	snRNP_SmF	coord: 6..90 e-value: 9.8E-23 score: 77.8
IPR016487	Sm-like protein Lsm6/SmF	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 12..88
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 5..85 e-value: 9.0E-32 score: 110.4
None	No IPR available	CDD	cd01726	LSm6	coord: 14..81 e-value: 5.83606E-43 score: 135.342
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 14..82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00090	Csa5G266840	Cucumber (Chinese Long) v2	carcuB0695
Carg00090	MELO3C022586	Melon (DHL92) v3.5.1	carmeB0659
Carg00090	ClCG11G000770	Watermelon (Charleston Gray)	carwcgB0645
Carg00090	CSPI05G12080	Wild cucumber (PI 183967)	carcpiB0707
Carg00090	CmaCh04G000070	Cucurbita maxima (Rimu)	carcmaB0949
Carg00090	CmaCh04G009730	Cucurbita maxima (Rimu)	carcmaB0948
Carg00090	CmoCh04G000090	Cucurbita moschata (Rifu)	carcmoB0924
Carg00090	CmoCh04G010500	Cucurbita moschata (Rifu)	carcmoB0923
Carg00090	Lsi11G000300	Bottle gourd (USVL1VR-Ls)	carlsiB601
Carg00090	Cp4.1LG01g06640	Cucurbita pepo (Zucchini)	carcpeB0939
Carg00090	Cp4.1LG01g07920	Cucurbita pepo (Zucchini)	carcpeB0938
Carg00090	CsGy5G009400	Cucumber (Gy14) v2	carcgybB0668
Carg00090	MELO3C022586.2	Melon (DHL92) v3.6.1	carmedB0669
Carg00090	CsaV3_5G012480	Cucumber (Chinese Long) v3	carcucB0706
Carg00090	Cla97C11G207110	Watermelon (97103) v2	carwmbB0690

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00090	Watermelon (97103) v1	carwmB0674