Csa5G266840 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G266840
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	U6 snRNA-associated Sm-like protein LSm6; contains IPR010920 (Like-Sm (LSM) domain)
Location	Chr5 : 11189927 .. 11194702 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGACTCAATTCATGATTTTTGTTAAAAGAGAGAGCAAATAAGATTTTGCCCTAACAATCGTCTTCTGCTTCATCTTCTTCTCTCTCACCGTACTCTACCTTTGAGTTTCTCCGACTATCCCTTCTTCTCTCACACTCTCTCTGCTTCATCCTCTCTCATCCACTTTCGCATTTCTTACAGTAACAGCGACACCAGATCTTAAGTTTTCTCGTCTTCACTCCACGGTATTTTATCGTTTCTTTTTCTTCGCCTTATGCGTGATTCTTTGGATACTTTCTAAATTCTTCTAATTTGTTTCAAGTTTTCATTTTCAGGAAACTTACCACCCTGTTAATTTGTTTGAATCCCCGAGTTTCGTTTAGGCTTGTATTTCATTTTGGTAGGTTATTTGTTTTTATGAGTGAACTTCTTTCTTATATTTGGCGAAGGGGAACTACATCGATTTTTGGTGAATTTAAGATTTTTGTCATTTGAAGTTTGTACTAATTTTCTGATTTTTCAAGATATTTTTGGAGGAATTTTATCTACTAGAGGGTTTCTCGTTTTTACTTTTATTTATTCAGAAAGCATTTTATATTCAGGTTTCCATATTGTTTCTGGATTGAAATGGTGGCTATGGAAACTACAATTGTCGTTAAATGACAGAAATCTTGAAAGAAAGTCAGAAAACTAAAACTTGGGCCTAACTAATTGGTTGCATGAATGAAGTGCAGTAGTACGTATATTAGCATTAGTTTGAAACAAGTTCGTGGACAAAAACCCAGTGTAAGCATATTCCAAACTGAACAATCTGGATTGGGTTCATAGTGTTGGAAAACACTGTAATTAATCTAACAGTGGCACCTCTAATGGTCTAGATGCTCTAGATTCCTTAATTTCCATTTGCATGTCCAGTAATTGCTTTTTGTAACTCCATTTTTGGGCTCTTGTTTTTACCCGTCCTTTTTTTTGTAATATTTTAAGTGAACTCATCGTTCTTAAATATCAATGAATTTTCAAAAGAGAGAATTCTCATTAACTTAATTCTCGTCAAGGAATTTTAGTTGAATAAACTGAAAGTTAATAAAGTAGATTAATTGGAATTCATTTAGACGTACCCAAGATAATTATGCATGCTTCAGATTTAAGAAAGCCAACGTGTATTTGAATCTTCTTTATTTTTTAGCTTTTTCATAGTTGTTTCTTCTTTGTTCCCTTTTATTGTTCAAACCCTGTTCAGTAACGATATTGTTTTTAGTCTTCTGTTCTTTGAAATTTATGCTTTCATGTTATGATTTTCACATTTCTTAAAGGAACGCTTGAATTCTTAGTGAAATTCTAGAAAGAAAAACATGTATAAAGAAAATAGTTTTTTTAGTTTTCAAATTTTGACTTGGTGTCTGAGGACGCTGATGAAAAGTGGATAACAACAAAGAAACTTATTGGTGGAAGTAGTGTATGTAAGTTTTTTAAAAAAAAACAAAAAACCTAATGACTATCAAATGGGGCCTTAGGTGTTCATTGCCACAATGGTTTCTCCTTTTCATTTCTCAGTCCTGTGTTCCGTTAAACCAAAATCTTCATGACTATCAAACCAAATAACTAACAAGACTACATTTCTGAGTTCATTGCCTCAATGTTCATCCTTATTAAGTGTTTTGTTAGCTAGTCTTCAGGAAGTCAATTTGTACTGGGGAGCTTTCATTTTTCCTGCCCTAGCTCTGTTTCTTACGCAATTTGTTCTTTTATTTGTATCTGCGTTGGTTTTGCCTAGCCTTTTTGTTCTTTTTTAGTTTTTAGTGTTGTTTTTGCGCCTTGGGGTATCATCCTAGTTGAGATGCTTGGTTTTGTTTGATGTTCCTATTTTATTGCTCTCTCTATATCTCTCTTGTACTATGAGCAGTTGTCTCATTTTATCTTTATTAATATCCAGTCTGTCTCCTTTTCAAAAAAAAAAAAAATTATGTGTCCTGTAGAGTTTTGTCTTATTTTTTACTCCCGTAACTATTGAAGCATATCATAATTTTTTTGAATACGTAGTGTCTGTTTATTAAAGCAATAAATGATAATTGCTCATTAATTCTTTTACGTTGTTTGATAGTGTTGAATAAATTTGATTACTAATATTCAGGTATAAAAAGTTGGTTGTGCAAATAGAAGAAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATGGTTGCCTCTACTCTTCATTCACCCTTGGTTTTGGGATAAGTCTGTACATGTTCAATTTTGATTTTAATTCTCAGGGCTGTATCATTAGTTTTAAGAATCTGTAGAAGTTCATGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTATTTTTTGTTAATGAATCTTACTTGTTGATAAATGGCGTTAATAGTCAATCTTTTTGTTTTCTTTCCTTATAAGAATCTGTAGACGTTGAGGGAAACCGACACTTGCAAATGTTGAGATACTATCCTTTTTTGTTGACAAATGGCGTCTTTAGTAAACACTTTTTATTCCATCTAATCTCTTTATCAATTTCTTGTCATTTAAACCTGATTTGTTTGTAATATTTTTAACATAAACCAAGCTTTCATGGAGAAGAAACAAAATAATACAAAAGAAGCATGAAAAAGATACCCAAAAAGCTGAGCCAGAGATACAACAATAACCTAACAAGATAAAAAGGCCTCCAATCCAAAATGATTAGACCAAGAGAATAATCATGGAAGTATTTTGAAACAGATGTCAGAAAGAGGCCTTAAACTTGGAAAGAGCGCATACATTCCTAAGACCTCTCAAACCTCTGATAATTCTCTCATTGATCTCCAACCAATGCTCTATTACATAGCAAATAAGCGAGTTTGCAAAAGCATACAACCCTTATATTGAAAAGACAAATGGAAGAAGGCCTCTTCCATCACAAGGCAACAATCTGATGAAAATATTAAGGGACAATTTTTATGGCGAGCTACATGTATGCTTTGGTGTGGGGGGCTATGGGATAGGATCAATAGTTTTAGAGGTTTGGAACAAGACAGTAGAGATGTTTTGGGTCCTTGTTAGGTTCTATGTTTCTTTCTAATGATGTTATCTATTTTTTTTTTTTAATTATCCTTATGGTCTTGTTTTTTGATTTACTAGATTCCCGTGGCTTTGGGATTTCTTGGACGTGACATTTTCTTCTGAACGAAATTGTAGTTCATTGTTAGTTTTTTATTCCTTCAAATTTATTTAAAAAAGAATAAGGTAGGGTTGTTATTAGGAATCTTATTGTGGGATTAAGAGTATGTTCCTATTTTTATATATTGATTAGATCAATCTTACTTGGGAGAATAGTTAAATGTTACAAGGCTTTCAAAAAAATCAAGCTCACAAAAAAAGGGAGCCAACTACCAGAAGGGGCTTCAACTAAGTAAAATAATGCTTGCTTATATGTTACACATGATCTTTGAAATTGAAAGCCGAAGGAAAGAATGAAACTTATGTAGGTATTGTAGAGAAGTTGTGATTTGTTATAACTAGAGTCGGTGGGAAATGGTAAAGGTATGGATTGATTTAGTTGAGAGCCTCTCAAGTTTGAGTGGAGTGTTCAAGTACCTCAAATTAATTGTGTTCCTCCATCTTTATCTTTTAACGCTATTTTAGCTATTATTTTGGTTCTATCACAATCTGTTATGGCTATGCACTCACCAAAAGTCTCAAAAAAAAAAAAGTTTCAAATTGTTATAGCATGCTGGTTTTTTCAACACCAAGCAATCTTACCAGCTCCGAAGGAAAATACCACGACCATTTAGCCATAAAGCCTCATTCACAAATCCTCAAATTGCCAATACAAAACCCTCCAAACTCAATAGGTATCATAACCCTCTCCTAACTAAATGTGAACTGTTCCTCTCGTCAATACATAACATAAGGAACATGAACATTTGTTTCACAAATGTTGTCTTGATTTTAAACATAACCATTTGTCGTCCTTTGTTTAGGACCTTTATCTTTTCTTGTGCAGTATTACCTATTAACAGTTGAAAAATAGATAAAATTTATGTTGAATTCTAATGTGAAGATCCCATTATATGTTTCATTGCAAAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGGTAGATATTGAAAAGAACATCTTCTTTGACAATCTTATCATCTTGACTCAACTCTTGATAATAATATTAAGCTACAATTTGTTAATGCAGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAGCGACGCTAAGAATTCTGACAGGAAATGAGAGATGGGTCGGAATTGGAAATTGATCATGAAATTGTGTTGTGTACAATGAAGTAGTGAGTCCAATCATCGCGCCAAGATGTTATGTTGTGGTTGTGAACAACTTCGACCAAAACTCTTGTTTGGTAGGAAAGAAATGAAATGCAAACTATGAGACCTTTGGACCTTTCTTTTATTGGAATTACTATTTTGATCTGCCTGAGACCCAATTAACAAATCCCTCCTTTTTAAAATCCTCATGTATGGCTCTTGATCATTTAAAATTCCTGTTTTTTCCTGTTCGAGCTAAAGATTCTGAAAATTTACCTTTCAGAATAACTATAAATTATAAATCT

mRNA sequence

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG

Coding sequence (CDS)

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG

Protein sequence

MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS*

Homology

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BLAST of Csa5G266840 vs. Swiss-Prot
Match: LSM6B_ARATH (Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-38
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Csa5G266840 vs. Swiss-Prot
Match: LSM6A_ARATH (Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-36
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Csa5G266840 vs. Swiss-Prot
Match: LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Csa5G266840 vs. Swiss-Prot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 1


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Csa5G266840 vs. Swiss-Prot
Match: LSM6_LACBS (U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-24
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1


Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
          T +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAF
Sbjct: 25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84

Query: 72 IRGNNVLYISTSK 85
          IRGNNVLYIS ++
Sbjct: 85 IRGNNVLYISAAE 97

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BLAST of Csa5G266840 vs. TrEMBL
Match: A0A0A0KSS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266840 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.9e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Csa5G266840 vs. TrEMBL
Match: D7T2I1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00940 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-42
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]

BLAST of Csa5G266840 vs. TrEMBL
Match: V4TUF1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023071mg PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Csa5G266840 vs. TrEMBL
Match: A9PAM0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Csa5G266840 vs. TrEMBL
Match: B9HHZ6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s07780g PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 44  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 103

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 104 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 134

[Close]

BLAST of Csa5G266840 vs. TAIR10
Match: AT2G43810.1 (AT2G43810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 158.7 bits (400), Expect = 1.8e-39
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Csa5G266840 vs. TAIR10
Match: AT3G59810.1 (AT3G59810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 153.7 bits (387), Expect = 5.6e-38
Identity = 75/86 (87.21%), Postives = 77/86 (89.53%), Query Frame = 1


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Csa5G266840 vs. TAIR10
Match: AT4G30220.2 (AT4G30220.2 small nuclear ribonucleoprotein F)

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
          P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 75 NNVLYI 81
          NNVLY+
Sbjct: 76 NNVLYV 81

[Close]

BLAST of Csa5G266840 vs. TAIR10
Match: AT2G14285.1 (AT2G14285.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1


Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 81
          ++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46

[Close]

BLAST of Csa5G266840 vs. NCBI nr
Match: gi|449445280|ref|XP_004140401.1| (PREDICTED: sm-like protein LSM36B [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Csa5G266840 vs. NCBI nr
Match: gi|225434160|ref|XP_002278412.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis vinifera])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-42
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]

BLAST of Csa5G266840 vs. NCBI nr
Match: gi|567899304|ref|XP_006442140.1| (hypothetical protein CICLE_v10023071mg [Citrus clementina])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Csa5G266840 vs. NCBI nr
Match: gi|566182882|ref|XP_002311269.2| (hypothetical protein POPTR_0008s07780g, partial [Populus trichocarpa])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 44  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 103

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 104 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 134

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BLAST of Csa5G266840 vs. NCBI nr
Match: gi|1009112725|ref|XP_015869890.1| (PREDICTED: sm-like protein LSM36B [Ziziphus jujuba])

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSSGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

The following BLAST results are available for this feature:

BLAST of Csa5G266840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM6B_ARATH	3.1e-38	84.62	Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1	[more]
LSM6A_ARATH	1.0e-36	87.21	Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1	[more]
LSM6_MOUSE	1.1e-32	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1	[more]
LSM6_HUMAN	1.1e-32	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1	[more]
LSM6_LACBS	1.1e-24	69.86	U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 /...	[more]

BLAST of Csa5G266840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSS9_CUCSA	5.9e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266840 PE=4 SV=1	[more]
D7T2I1_VITVI	3.2e-42	96.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00940 PE=3 SV=...	[more]
V4TUF1_9ROSI	7.2e-42	95.60	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023071mg PE=3 SV=1	[more]
A9PAM0_POPTR	7.2e-42	95.60	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9HHZ6_POPTR	7.2e-42	95.60	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s07780g P...	[more]

BLAST of Csa5G266840 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43810.1	1.8e-39	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	5.6e-38	87.21	Small nuclear ribonucleoprotein family protein	[more]
AT4G30220.2	5.7e-14	48.48	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	1.6e-08	50.00	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Csa5G266840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445280\|ref\|XP_004140401.1\|	8.5e-44	100.00	PREDICTED: sm-like protein LSM36B [Cucumis sativus]	[more]
gi\|225434160\|ref\|XP_002278412.1\|	4.6e-42	96.70	PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis vinifera]	[more]
gi\|567899304\|ref\|XP_006442140.1\|	1.0e-41	95.60	hypothetical protein CICLE_v10023071mg [Citrus clementina]	[more]
gi\|566182882\|ref\|XP_002311269.2\|	1.0e-41	95.60	hypothetical protein POPTR_0008s07780g, partial [Populus trichocarpa]	[more]
gi\|1009112725\|ref\|XP_015869890.1\|	1.4e-41	95.60	PREDICTED: sm-like protein LSM36B [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0030490	maturation of SSU-rRNA
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097918	cucumber EST collection version 3.0	transcribed_cluster
CU127344	cucumber EST collection version 3.0	transcribed_cluster
CU155374	cucumber EST collection version 3.0	transcribed_cluster
CU161096	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G266840.2	Csa5G266840.2	mRNA
Csa5G266840.1	Csa5G266840.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097918	CU097918	transcribed_cluster
CU161096	CU161096	transcribed_cluster
CU127344	CU127344	transcribed_cluster
CU155374	CU155374	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 17..81 score: 1.4
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 17..82 score: 7.8
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 14..82 score: 5.03
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 18..82 score: 3.1
None	No IPR available	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 4..90 score: 2.4
None	No IPR available	PANTHER	PTHR11021:SF5	U6 SNRNA-ASSOCIATED SM PROTEIN-RELATED	coord: 4..90 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G266840	MELO3C022586	Melon (DHL92) v3.5.1	cumeB344
Csa5G266840	ClCG11G000770	Watermelon (Charleston Gray)	cuwcgB358
Csa5G266840	Lsi11G000300	Bottle gourd (USVL1VR-Ls)	culsiB336
Csa5G266840	MELO3C022586.2	Melon (DHL92) v3.6.1	cumedB360
Csa5G266840	Cla97C11G207110	Watermelon (97103) v2	cuwmbB361
Csa5G266840	CSPI05G12080	Wild cucumber (PI 183967)	cpicuB240
Csa5G266840	Cucsa.277300	Cucumber (Gy14) v1	cgycuB395
Csa5G266840	CmaCh04G009730	Cucurbita maxima (Rimu)	cmacuB762
Csa5G266840	CmoCh04G010500	Cucurbita moschata (Rifu)	cmocuB751
Csa5G266840	Cp4.1LG01g07920	Cucurbita pepo (Zucchini)	cpecuB452
Csa5G266840	CsGy5G009400	Cucumber (Gy14) v2	cgybcuB231
Csa5G266840	Carg00090	Silver-seed gourd	carcuB0695

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G266840	Watermelon (97103) v2	cuwmbB362
Csa5G266840	Melon (DHL92) v3.5.1	cumeB369
Csa5G266840	Watermelon (97103) v1	cuwmB433
Csa5G266840	Cucurbita pepo (Zucchini)	cpecuB429