Cucsa.277300 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.277300
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	U6 snRNA-associated Sm-like protein LSm6
Location	scaffold02601 : 525380 .. 530034 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTAAAAGAGAGAGCAAATAAGATTTTGCCCTAACAATCGTCTTCTGCTTCATCTTCTTCTCTCTCACCGTACTCTACCTTTGAGTTTCTCCGACTATCCCTTCTTCTCTCACACTCTCTCTGCTTCATCCTCTCTCATCCACTTTCGCATTTCTTACAGTAACAGCGACACCAGATCTTAAGTTTTCTCGTCTTCACTCCACGGTATTTTATCGTTTCTTTTTCTTCGCCTTATGCGTGATTCTTTGGATACTTTCTAAATTCTTCTAATTTGTTTCAAGTTTTCATTTTCAGGAAACTTACCACCCTGTTAATTTGTTTGAATCCCCGAGTTTCGTTTAGGCTTGTATTTCATTTTGGTAGGTTATTTGTTTTTATGAGTGAACTTCTTTCTTATATTTGGCGAAGGGGAACTACATCGATTTTTGGTGAATTTAAGATTTTTGTCATTTGAAGTTTGTACTAATTTTCTGATTTTTCAAGATATTTTTGGAGGAATTTTATCTACTAGAGGGTTTCTCGTTTTTACTTTTATTTATTCAGAAAGCATTTTATATTCAGGTTTCCATATTGTTTCTGGATTGAAATGGTGGCTATGGAAACTACAATTGTCGTTAAATGACAGAAATCTTGAAAGAAAGTCAGAAAACTAAAACTTGGGCCTAACTAATTGGTTGCATGAATGAAGTGCAGTAGTACGTATATTAGCATTAGTTTGAAACAAGTTCGTGGACAAAAACCCAGTGTAAGCATATTCCAAACTGAACAATCTGGATTGGGTTCATAGTGTTGGAAAACACTGTAATTAATCTAACAGTGGCACCTCTAATGGTCTAGATGCTCTAGATTCCTTAATTTCCATTTGCATGTCCAGTAATTGCTTTTTGTAACTCCATTTTTGGGCTCTTGTTTTTACCCGTCCTTTTTTTTGTAATATTTTAAGTGAACTCATCGTTCTTAAATATCAATGAATTTTCAAAAGAGAGAATTCTCATTAACTTAATTCTCGTCAAGGAATTTTAGTTGAATAAACTGAAAGTTAATAAAGTAGATTAATTGGAATTCATTTAGACGTACCCAAGATAATTATGCATGCTTCAGATTTAAGAAAGCCAACGTGTATTTGAATCTTCTTTATTTTTTAGCTTTTTCATAGTTGTTTCTTCTTTGTTCCCTTTTATTGTTCAAACCCTGTTCAGTAACGATATTGTTTTTAGTCTTCTGTTCTTTGAAATTTATGCTTTCATGTTATGATTTTCACATTTCTTAAAGGAACGCTTGAATTCTTAGTGAAATTCTAGAAAGAAAAACATGTATAAAGAAAATAGTTTTTTtAGTTTTCAAATTTTGACTTGGTGTCTGAGGACGCTGATGAAAAGTGGATAACAACAAAGAAACTTATTGGTGGAAGTAGTGTATGTAAGTTTTTtAAAAAAAACAAAAAaCCTAATGACTATCAAATGGGGCCTTAGGTGTTCATTGCCACAATGGTTTCTCCTTTTCATTTCTCAGTCCTGTGTTCCGTTAAACCAAAATCTTCATGACTATCAAACCAAATAACTAACAAGACTACATTTCTGAGTTCATTGCCTCAATGTTCATCCTTATTAAGTGTTTTGTTAGCTAGTCTTCAGGAAGTCAATTTGTACTGGGGAGCTTTCATTTTTCCTGCCCTAGCTCTGTTTCTTACGCAATTTGTTCTTTTATTTGTATCTGCGTTGGTTTTGCCTAGCCTTTTTGTTCTTTTTTAGTTTTTAGTGTTGTTTTTGCGCCTTGGGGTATCATCCTAGTTGAGATGCTTGGTTTTGTTTGATGTTCCTATTTTATTGCTCTCTCTATATCTCTCTTGTACTATGAGCAGTTGTCTCATTTTATCTTTATTAATATCCAGTCTGTCTCCTTTTCAAAAaAAAAAAaTTATGTGTCCTGTAGAGTTTTGTCTTATTTTTTACTCCCGTAACTATTGAAGCATATCATAATTTTTTtGAATACGTAGTGTCTGTTTATTAAAGCAATAAATGATAATTGCTCATTAATTCTTTTACGTTGTTTGATAGTGTTGAATAAATTTGATTACTAATATTCAGGTATAAAAAGTTGGTTGTGCAAATAGAAGAAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATGGTTGCCTCTACTCTTCATTCACCCTTGGTTTTGGGATAAGTCTGTACATGTTCAATTTTGATTTTAATTCTCAGGGCTGTATCATTAGTTTTAAGAATCTGTAGAAGTTCATGGAAAACAACACTTGCAAATGTTGAGGCACTATCCTATTTTTtGTTAATGAATCTTACTTGTTGATAAATGGCGTTAATAGTCAATCTTTTTGTTTTCTTTCCTTATAAGAATCTGTAGACGTTGAGGGAAACCGACACTTGCAAATGTTGAGATACTATCCTTTTTTGTTGACAAATGGCGTCTTTAGTAAACACTTTTTATTCCATCTAATCTCTTTATCAATTTCTTGTCATTTAAACCTGATTTGTTTGTAATATTTTTAACATAAACCAAGCTTTCATGGAGAAGAAACAAAATAATACAAAAGAAGCATGAAAAAGATACCCAAAAAGCTGAGCCAGAGATACAACAATAACCTAACAAGATAAAAAGGCCTCCAATCCAAAATGATTAGACCAAGAGAATAATCATGGAAGTATTTTGAAACAGATGTCAGAAAGAGGCCTTAAACTTGGAAAGAGCGCATACATTCCTAAGACCTCTCAAACCTCTGATAATTCTCTCATTGATCTCCAACCAATGCTCTATTACATAGCAAATAAGCGAGTTTGCAAAAGCATACAACCCTTATATTGAAAAGACAAATGGAAGAAGGCCTCTTCCATCACAAGGCAACAATCTGATGAAAATATTAAGGGACAATTTTTATGGCGAGCTACATGTATGCTTTGGTGTGGGGGgCTATGGGATAGGATCAATAGTTTTAGAGGTTTGGAACAAGACAGTAGAGATGTTTTGGGTCCTTGTTAGGTTCTATGTTTCTTTCTAATGATGTTATCtATTTTTTTTTttAATTATCCTTATGGTCTTGTTTTTTGATTTACTAGATTCCCGTGGCTTTGGGATTTCTTGGACGTGACATTTTCTTCTGAACGAAATTGTAGTTCATTGTTAGTTTTTTATTCCTTCAAATTTATTTAAAAAaGAATAAGGTAGGGTTGTTATTAGGAATCTTATTGTGGGaTTAAGAGTATGTTCCTATTTTTATATATTGATTAGATCAATCTTACTTGGGAGAATAGTTAAATGTTACAAGGCTTTCAAAAAAATCAAGCTCACAAAAAAAaGGGAGCCAACTACCAGAAGGGGCTTCAACTAAGTAAAATAATGCTTGCTTATATGTTACACATGATCTTTGAAATTGAAAGCCGAAGGAAAGAATGAAACTTATGTAGGTATTGTAGAGAAGTTGTGATTTGTTATAACTAGAGTCGGTGGGAAATGGTAAAGGTATGGATTGATTTAGTTGAGAGCCTCTCAAGTTTGAGTGGAGTGTTCAAGTACCTCAAATTAATTGTGTTCCTCCATCTTTATCTTTTAACGCTATTTTAGCTATTATTTTGGTTCTATCACAATCTGTTATGGCTATGCACTCACCAAAAGTCTCAAAAAAAAAAaGTTTCAAATTGTTATAGCATGCTGGTTTTTTCAACACCAAGCAATCTTACCAGCTCCGAAGGAAAATACCACGACCATTTAGCCATAAAGCCTCATTCACAAATCCTCAAATTGCCAATACAAAACCCTCCAAACTCAATAGGTATCATAACCCTCTCCTAACTAAATGTGAACTGTTCCTCTCGTCAATACATAACATAAGGAACATGAACATTTGTTTCACAAATGTTGTCTTGATTTTAAACATAACCATTTGTCGTCCTTTGTTTAGGACCTTTATCTTTTCTTGTGCAGTATTACCTATTAACAGTTGAAAAATAGATAAAATTTATGTTGAATTCTAATGTGAAGATCCCATTATATGTTTCATTGCAAAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGGTAGATATTGAAAAGAACATCTTCTTTGACAATCTTATCATCTTGACTCAACTCTTGATAATAATATTAAGCTACAATTTGTTAATGCAGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAGCGACGCTAAGAATTCTGACAGGAAATGAGAGATGGGTCGGAATTGGAAATTGATCATGAAATTGTGTTGTGTACAATGAAGTAGTGAGTCCAATCATCGCGCCAAGATGTTATGTTGTGGTTGTGAACAACTTCGACCAAAACTCTTGTTTGGTAGGAAAGAAATGAAATGCAAACTATGAGACCTTTGGACCTTTCTTTTATTGGAATTACTATTTTGATCTGCCTGAGACCCAATTAACAAATCCCTCCTTTTTAAAATCCTC

mRNA sequence

TGTTAAAAGAGAGAGCAAATAAGATTTTGCCCTAACAATCGTCTTCTGCTTCATCTTCTTCTCTCTCACCGTACTCTACCTTTGAGTTTCTCCGACTATCCCTTCTTCTCTCACACTCTCTCTGCTTCATCCTCTCTCATCCACTTTCGCATTTCTTACAGTAACAGCGACACCAGATCTTAAGTTTTCTCGTCTTCACTCCACGTTTTCATTTTCAGGAAACTTACCACCCTGTTAATTTGTTTGAATCCCCGAGTTTCGTTTAGGCTTGTATTTCATTTTGGTATAAAAAGTTGGTTGTGCAAATAGAAGAAAACTAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAGCGACGCTAAGAATTCTGACAGGAAATGAGAGATGGGTCGGAATTGGAAATTGATCATGAAATTGTGTTGTGTACAATGAAGTAGTGAGTCCAATCATCGCGCCAAGATGTTATGTTGTGGTTGTGAACAACTTCGACCAAAACTCTTGTTTGGTAGGAAAGAAATGAAATGCAAACTATGAGACCTTTGGACCTTTCTTTTATTGGAATTACTATTTTGATCTGCCTGAGACCCAATTAACAAATCCCTCCTTTTTAAAATCCTC

Coding sequence (CDS)

ATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCGGACTTTCTCAAGTCAATTCGGGGTCGTCCCGTAGTTGTGAAACTCAACTCTGGTGTTGACTACAGAGGTATTCTTGCCTGTCTCGATGGATACATGAATATAGCAATGGAGCAAACCGAAGAATATGTAAATGGACAGTTGAAGAACAAATATGGCGATGCTTTCATTCGTGGAAATAACGTTCTGTACATCAGTACATCAAAGAGGACATTAGCAGAAGGGTCATCTTAG

Protein sequence

MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS*

Homology

[Close]

BLAST of Cucsa.277300 vs. Swiss-Prot
Match: LSM6B_ARATH (Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.1e-38
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cucsa.277300 vs. Swiss-Prot
Match: LSM6A_ARATH (Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-36
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Cucsa.277300 vs. Swiss-Prot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Cucsa.277300 vs. Swiss-Prot
Match: LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-32
Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 9  SASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 68
          S   +TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2  SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 69 DAFIRGNNVLYISTSKRTL 88
          DAFIRGNNVLYIST KR +
Sbjct: 62 DAFIRGNNVLYISTQKRRM 80

[Close]

BLAST of Cucsa.277300 vs. Swiss-Prot
Match: LSM6_LACBS (U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = 1


Query: 12 TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 71
          T +P DFLK + G+ V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAF
Sbjct: 25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84

Query: 72 IRGNNVLYISTSK 85
          IRGNNVLYIS ++
Sbjct: 85 IRGNNVLYISAAE 97

[Close]

BLAST of Cucsa.277300 vs. TrEMBL
Match: A0A0A0KSS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266840 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 5.9e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cucsa.277300 vs. TrEMBL
Match: D7T2I1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00940 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.2e-42
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]

BLAST of Cucsa.277300 vs. TrEMBL
Match: A0A067DYC9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034564mg PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Cucsa.277300 vs. TrEMBL
Match: B9HHZ6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s07780g PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 44  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 103

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 104 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 134

[Close]

BLAST of Cucsa.277300 vs. TrEMBL
Match: A9PAM0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 7.2e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Cucsa.277300 vs. TAIR10
Match: AT2G43810.1 (AT2G43810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 158.7 bits (400), Expect = 1.8e-39
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS  GEK S +TKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1  MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]

BLAST of Cucsa.277300 vs. TAIR10
Match: AT3G59810.1 (AT3G59810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 153.7 bits (387), Expect = 5.6e-38
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 1


Query: 6  EKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 65
          EK S +TKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6  EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 66 KYGDAFIRGNNVLYISTSKRTLAEGS 92
          KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66 KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]

BLAST of Cucsa.277300 vs. TAIR10
Match: AT4G30220.2 (AT4G30220.2 small nuclear ribonucleoprotein F)

HSP 1 Score: 73.9 bits (180), Expect = 5.7e-14
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 1


Query: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
          P  FL ++ G+ V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 75 NNVLYI 81
          NNVLY+
Sbjct: 76 NNVLYV 81

[Close]

BLAST of Cucsa.277300 vs. TAIR10
Match: AT2G14285.1 (AT2G14285.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1


Query: 35 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 81
          ++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Sbjct: 1  MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46

[Close]

BLAST of Cucsa.277300 vs. NCBI nr
Match: gi|449445280|ref|XP_004140401.1| (PREDICTED: sm-like protein LSM36B [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.5e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 93
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]

BLAST of Cucsa.277300 vs. NCBI nr
Match: gi|225434160|ref|XP_002278412.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis vinifera])

HSP 1 Score: 178.7 bits (452), Expect = 4.6e-42
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]

BLAST of Cucsa.277300 vs. NCBI nr
Match: gi|567899304|ref|XP_006442140.1| (hypothetical protein CICLE_v10023071mg [Citrus clementina])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]

BLAST of Cucsa.277300 vs. NCBI nr
Match: gi|566182882|ref|XP_002311269.2| (hypothetical protein POPTR_0008s07780g, partial [Populus trichocarpa])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
           MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 44  MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 103

Query: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 104 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 134

[Close]

BLAST of Cucsa.277300 vs. NCBI nr
Match: gi|1009112725|ref|XP_015869890.1| (PREDICTED: sm-like protein LSM36B [Ziziphus jujuba])

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
          MS GGEKGSA+TKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1  MSSGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 92
          GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

The following BLAST results are available for this feature:

BLAST of Cucsa.277300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM6B_ARATH	3.1e-38	84.62	Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1	[more]
LSM6A_ARATH	1.0e-36	87.21	Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1	[more]
LSM6_HUMAN	1.1e-32	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1	[more]
LSM6_MOUSE	1.1e-32	84.81	U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1	[more]
LSM6_LACBS	1.1e-24	69.86	U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 /...	[more]

BLAST of Cucsa.277300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSS9_CUCSA	5.9e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266840 PE=4 SV=1	[more]
D7T2I1_VITVI	3.2e-42	96.70	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00940 PE=3 SV=...	[more]
A0A067DYC9_CITSI	7.2e-42	95.60	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034564mg PE=3 SV=1	[more]
B9HHZ6_POPTR	7.2e-42	95.60	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s07780g P...	[more]
A9PAM0_POPTR	7.2e-42	95.60	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]

BLAST of Cucsa.277300 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43810.1	1.8e-39	84.62	Small nuclear ribonucleoprotein family protein	[more]
AT3G59810.1	5.6e-38	87.21	Small nuclear ribonucleoprotein family protein	[more]
AT4G30220.2	5.7e-14	48.48	small nuclear ribonucleoprotein F	[more]
AT2G14285.1	1.6e-08	50.00	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Cucsa.277300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445280\|ref\|XP_004140401.1\|	8.5e-44	100.00	PREDICTED: sm-like protein LSM36B [Cucumis sativus]	[more]
gi\|225434160\|ref\|XP_002278412.1\|	4.6e-42	96.70	PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis vinifera]	[more]
gi\|567899304\|ref\|XP_006442140.1\|	1.0e-41	95.60	hypothetical protein CICLE_v10023071mg [Citrus clementina]	[more]
gi\|566182882\|ref\|XP_002311269.2\|	1.0e-41	95.60	hypothetical protein POPTR_0008s07780g, partial [Populus trichocarpa]	[more]
gi\|1009112725\|ref\|XP_015869890.1\|	1.4e-41	95.60	PREDICTED: sm-like protein LSM36B [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.277300.1	Cucsa.277300.1	mRNA
Cucsa.277300.2	Cucsa.277300.2	mRNA
Cucsa.277300.4	Cucsa.277300.4	mRNA
Cucsa.277300.3	Cucsa.277300.3	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 17..81 score: 1.4
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 17..82 score: 7.8
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 14..82 score: 5.03
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 18..82 score: 3.1
None	No IPR available	PANTHER	PTHR11021	SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F	coord: 4..90 score: 2.4
None	No IPR available	PANTHER	PTHR11021:SF5	U6 SNRNA-ASSOCIATED SM PROTEIN-RELATED	coord: 4..90 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.277300	Csa5G266840	Cucumber (Chinese Long) v2	cgycuB395
Cucsa.277300	MELO3C022586	Melon (DHL92) v3.5.1	cgymeB463
Cucsa.277300	ClCG11G000770	Watermelon (Charleston Gray)	cgywcgB479
Cucsa.277300	CSPI05G12080	Wild cucumber (PI 183967)	cgycpiB418
Cucsa.277300	CmaCh04G009730	Cucurbita maxima (Rimu)	cgycmaB0772
Cucsa.277300	CmoCh04G010500	Cucurbita moschata (Rifu)	cgycmoB0766
Cucsa.277300	Lsi11G000300	Bottle gourd (USVL1VR-Ls)	cgylsiB449
Cucsa.277300	Cp4.1LG01g07920	Cucurbita pepo (Zucchini)	cgycpeB0727
Cucsa.277300	MELO3C022586.2	Melon (DHL92) v3.6.1	cgymedB459
Cucsa.277300	CsaV3_5G012480	Cucumber (Chinese Long) v3	cgycucB425
Cucsa.277300	Cla97C11G207110	Watermelon (97103) v2	cgywmbB482

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.277300	Watermelon (97103) v1	cgywmB508