CmoCh04G000090 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G000090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSmall nuclear ribonucleoprotein F (snRNP-F) (Sm protein F)
LocationCmo_Chr04 : 45978 .. 50046 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGTGAGCGTGGATGTGGTGCTGGTCTATCTGAGTTTATTATGGGTAGTGGTAATAATGGAAATTTTCTGGTGGCTTTTTGCGGTGTCGTTTTGCAATCTTAAAATCGGAGAAATGCAAACTGGATTCACTGGACAACCTTTGAGGCTTATTGATAATATATATAAAGTTCTAAATGTTGAGAGTTGTCTTTGACGATGCTCATTTATCCCAAACTGCTGGAATAGAAACATTAATCAGAGAGAGGCATCATCCATTTGGTTTACAGCACAAGGTATTGTCCTTCACTATCACCGACTGTCCCACCTAATTCTAAATAAGCATTAGTTGCCATGAAGTGTTGCTATTAATATCGCAAGAATCAAAACAATAAATATTCAATTGGGATAATAACTGGAAAAATAATAATAACTTTGATTCTTGAACTATTTCATTAAAAAAAAACAACAACATTAGTTGTGAAATAAGCAAAACCACATATGGACGACGTGGTGTTTGATGAAATGATAGAATGAATTTAATGGTCGATAATGTAATTTAACTCTAAAATCTCCAATCAAATGGGTGTTTAATTTTTTGAGACGTTGCTCCTCTTCCAAGTACTTACTTCTCTAAGAAATAGTGGGTACAACAAAAGGGAAATAAAGGTTTTGCCACGTGTATGCGTAATAATGCTAACTGAATAAATTAAAACATTATTTGCCAAATATTAAATAAAACTTCCAACTCTACTATTGTATTAAAGTCCTAGAAAATATAAATTTTAATTTTTGAACTTGGTAAGATGTAAAAATTTTGTAAAATAGACCTTAAACTTTGATAACATTTTGGATTTTGATAACAATTTTTACATTCCTTCCCCTAGACTTTCATTTGAAAAATGGTCAACGAAAGTTTTCATCTTCACGCGGATTTAAAGAATGAAAATTGTTTAATTCCAAAATGACGAAGCTTAAGATATCACTCCCCGTTAAATTTTTACAAAATAAAACTCAAATTACAAAAGATCCAAATGTTACTTTCAGCAATTATAAATAAAATATGAAAGGAAAGACAAAAAATACTTTTGCCCTAATCTTCGTCTTTTTGTTTTTGATTCTCTTTTAGACAATCCCTCGTACCGTTACGCTCTCTCTGTTTTTCTCTTCCTCATCCACCTTCGCAGCCAGCAGTTGAGAGGGATATCCACACCAGGTCTTCCGTTTTCTCGTATCCATATCTTTTGATATTATATCGTTTCTTTATCCTTCTTTTACTCTCCGTTTCTTCGTCTTCTGATTTTTTTGGTTCAAATTTCTCAACTGCTGTGATTTGGGAAGACTGACAGCGTTTTTTGGTTCGTTTTGGCTCACCAGAAACTTACGGAAATGAAATTTTTAAAAATACATTAAACAAAAGGAATTTGTTTCTGTTTGGTTTAGTTTGGACTATTAATTTTGCATCCTTATGCCCTTAGTCTAAGATGCTTATAAATGGCTGTTCATATTCATATTTGCTTTAGATTTAAGAAATCCACTATGTACTTGAATCTTTTTCAATTTCTAGCTTTTACATAATGATTCCTTTGTGAATCCTCATTATTGTTTAGACGTTCATTACCTCAATGGATTCTCAATTTCATTTTTGAGACGTGCAGATTTTTCTGTTTGAGCCCTTGTTCCTTTAACTATGGGGGTGTGTCATAGTTCATTTGAAATATATATTTAGTGGCTGTTAAATGAAAATTGCACATAAGTTCTTCTATGTTCGGTGATGGTCCTGAATAAATTTGACTACTTATATCTGATTAGCTATAACAAGTTGGTTGTGCAGATAGAAGAAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCATCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATATTTGCTTCTACTTTTCTTTTCCCCTGGATAAGTCTCTACATGTTCAATCTTGTTTCATTTTTATTCCCAGAATTGTATTATTACTTCTAAGAATCTGATAGATGATGTAAAAAATTACCTGCAAATGTTGATGCACTATCTTTTTTTTTTTTTTTTTTTTAATTCACGTATTTTCTTTGGCGTCATTTTTCATATATTTTTTTTCTCTACATAATCGCTTTTATTATGACATTACTTGAACATGATATATTCTATAGGTTGATTTTTGTTCTTGCGTTCATATAATCTCTCCTTCAATTCCTTGTCCTTCAAACATGTCTCGTTTGTGAAAAATGTTTTCTTCTTTTTAAATTTTAGAAAATCAAGCTTTTAGGGGGGAAGAAATGGAAGAATGCAAAAGGGGCAAAAAAAAAAAAAATGCTGACCCTATCACAAGATAAAAGGGGCTCCAAGAGAATATCTGCAAAATGAAATATATGCTTAGGGATTGGCATTAAACTTTGTCAAGAGCCCACAGATCTTCCCATGACCTCTCGATCCGTCTAGAAATTCTCGTGTTCATTTCCATTCAAGTAGCAAAAGAAACTAGTCTACCATAGGGTACGACCCTTATCTTGAAAAGATGGATGGAATAAGACTTCCACCACGAGGCAACAATAACTATTACGAGTTGGGCACACATCAAAAGTCTCCAAAAGAGAGTTCCAAATTGAGATAGCTAACCTCAATCCCAAAGAATATGACCCATGTGCTCAAACACCTCAATCGTGGCTTAAGCACAAAGGATGCGTATATCTAGATGCGGTTAGCGTTTTCCATGCAAAATCTGCCAGGCAAAGAGCTTGACCTTGCTGGGGACTTTTTCCTTCCGTAACAACGAAAAGATAGGATTGAGGAGTGTTGTGGGAATGTAACCAAAAGCAAATATCTCTATGGGTGAAGTTGGTCTCTTCTCAATAGAGAAAGTTGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTGATATCGAATGCTGAAGTTAAATGAATTGAATTACCTGCCCAAGAAATGACTAAAGTCAAAGAGGAAAGTATGTACAAAGGAGGAAACAAGTTATGAAAGGGTTTATCACCCACCAAGTGGTCCTCCCAGACATAGGTGTTTGAACCATTCCTGGCAGTGATTAATGAAATTGGAGAAAAGGGACCTAAAGACATGGCTTTCCAAGGGTTTCGGAAAGAAGGGATGTGCTATACCTGTTCACTTAAAGTATTCAGCTCCAAAGCAAAACATCACAATAATTTAGCCGAAGAGCTTCATTGCAAATCCTCAAATTGCCAACACCTATCCCTCGAAACTTAATAGGTCTCCTAACCCTCTCCCAACCAACCAAATGTGAACTATCCCCTTGACCAACACCCTCCCACATTAACCGCAAATGTTGTTTTGATTTTAAACATGACCATTTATAGACCTTTGTATTTTTGTCTTATCTCGTGCAGTATAACTGATGAAAAACAGATGTTCTCTATTTTGAATTCTGATGAGAAGATCCCATTATACTTCTCATTGTATAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGGTAAATATCAAAATAATATCTGTGATGATATTATTGATGTTTTGAGATCAATATGAACATCAATTTCTTAATGCAGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAGCTTTTAGCTAAGGATCCGCCCAGGAAAGGCACATCCTTTGGAGTTATGTTTCTTCCTACAGTTCTATGCTGTAAGATTGAGAGATCAATCGGAATTGGAAATTGATCGTTCAAGTTTGCGTTGTACAAAAAAGCTTTGTTTAGTTGGAAATGGAATTTACATTATGATGAACCTTTTGGATTTTTCTTTTATTGTAATTACTGATCTGACTGCTTTCACCTCTTCTTTGCGTTCTTTCTTAAACTTTGTAGCAAAATCGTTTCATTCTCAGCTGGAAAAGTTGTATTCTCCTCCCATTGTGCAAGAGAGCGACTCCTC

mRNA sequence

ATGCATGTGAGCGTGGATGTGGTGCTGGTCTATCTGAGTTTATTATGGGTAGTGGTAATAATGGAAATTTTCTGGTGGCTTTTTGCGGTGTCGTTTTGCAATCTTAAAATCGGAGAAATGCAAACTGGATTCACTGGACAACCTTTGAGGCTTATTGATAATATATATAAAGTTCTAAATGTTGAGAACAATCCCTCGTACCGTTACGCTCTCTCTGTTTTTCTCTTCCTCATCCACCTTCGCAGCCAGCAGTTGAGAGGGATATCCACACCAGATAGAAGAAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCATCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAGCTTTTAGCTAAGGATCCGCCCAGGAAAGGCACATCCTTTGGAGTTATGTTTCTTCCTACAGTTCTATGCTGTAAGATTGAGAGATCAATCGGAATTGGAAATTGATCGTTCAAGTTTGCGTTGTACAAAAAAGCTTTGTTTAGTTGGAAATGGAATTTACATTATGATGAACCTTTTGGATTTTTCTTTTATTGTAATTACTGATCTGACTGCTTTCACCTCTTCTTTGCGTTCTTTCTTAAACTTTGTAGCAAAATCGTTTCATTCTCAGCTGGAAAAGTTGTATTCTCCTCCCATTGTGCAAGAGAGCGACTCCTC

Coding sequence (CDS)

ATGCATGTGAGCGTGGATGTGGTGCTGGTCTATCTGAGTTTATTATGGGTAGTGGTAATAATGGAAATTTTCTGGTGGCTTTTTGCGGTGTCGTTTTGCAATCTTAAAATCGGAGAAATGCAAACTGGATTCACTGGACAACCTTTGAGGCTTATTGATAATATATATAAAGTTCTAAATGTTGAGAACAATCCCTCGTACCGTTACGCTCTCTCTGTTTTTCTCTTCCTCATCCACCTTCGCAGCCAGCAGTTGAGAGGGATATCCACACCAGATAGAAGAAAACCAGAGATGAGTATTGGTGGTGAAAAAGGTTCTGCATCAACAAAGACACCAGCAGACTTTCTCAAATCAATTCGGGGCCATCCTGTAGTCGTGAAACTCAATTCTGGTGTTGACTATCGAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG
Homology
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BLAST of CmoCh04G000090 vs. Swiss-Prot
Match: LSM6B_ARATH (Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.8e-38
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS  GEK S +TKTPADFLKSIRG PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1   MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61  GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]
BLAST of CmoCh04G000090 vs. Swiss-Prot
Match: LSM6A_ARATH (Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-36
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1 

Query: 103 EKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 162
           EK S +TKTPADFLKSIRG PVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6   EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 163 KYGDAFIRGNNVLYISTSKRTLAEGS 189
           KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66  KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]
BLAST of CmoCh04G000090 vs. Swiss-Prot
Match: LSM6_MOUSE (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 106 SASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 165
           S   +TP+DFLK I G PVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2   SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 166 DAFIRGNNVLYISTSKRTL 185
           DAFIRGNNVLYIST KR +
Sbjct: 62  DAFIRGNNVLYISTQKRRM 80

[Close]
BLAST of CmoCh04G000090 vs. Swiss-Prot
Match: LSM6_HUMAN (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-32
Identity = 66/79 (83.54%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 106 SASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG 165
           S   +TP+DFLK I G PVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYG
Sbjct: 2   SLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG 61

Query: 166 DAFIRGNNVLYISTSKRTL 185
           DAFIRGNNVLYIST KR +
Sbjct: 62  DAFIRGNNVLYISTQKRRM 80

[Close]
BLAST of CmoCh04G000090 vs. Swiss-Prot
Match: LSM6_LACBS (U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1 

Query: 109 TKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAF 168
           T +P DFLK + G  V+V+L SGVDYRG+L+CLDGYMNIA+EQTEE+VNG + N+YGDAF
Sbjct: 25  TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84

Query: 169 IRGNNVLYISTSK 182
           IRGNNVLYIS ++
Sbjct: 85  IRGNNVLYISAAE 97

[Close]
BLAST of CmoCh04G000090 vs. TrEMBL
Match: A0A0A0KSS9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266840 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 190
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]
BLAST of CmoCh04G000090 vs. TrEMBL
Match: B9HHZ6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s07780g PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 94  RKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 153
           RK +MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTE
Sbjct: 40  RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 99

Query: 154 EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 100 EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA 134

[Close]
BLAST of CmoCh04G000090 vs. TrEMBL
Match: D7T2I1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00940 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.6e-42
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]
BLAST of CmoCh04G000090 vs. TrEMBL
Match: A0A067DYC9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034564mg PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]
BLAST of CmoCh04G000090 vs. TrEMBL
Match: V4TUF1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023071mg PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

[Close]
BLAST of CmoCh04G000090 vs. TAIR10
Match: AT2G43810.1 (AT2G43810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 159.1 bits (401), Expect = 2.7e-39
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS  GEK S +TKTPADFLKSIRG PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1   MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKN YGDAF+RGNNVLYIST+K TL++G+
Sbjct: 61  GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91

[Close]
BLAST of CmoCh04G000090 vs. TAIR10
Match: AT3G59810.1 (AT3G59810.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-37
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 1 

Query: 103 EKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 162
           EK S +TKTPADFLKSIRG PVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 6   EKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKN 65

Query: 163 KYGDAFIRGNNVLYISTSKRTLAEGS 189
           KYGDAFIRGNNVLYIST   T+A+G+
Sbjct: 66  KYGDAFIRGNNVLYISTVNMTVADGA 91

[Close]
BLAST of CmoCh04G000090 vs. TAIR10
Match: AT4G30220.2 (AT4G30220.2 small nuclear ribonucleoprotein F)

HSP 1 Score: 75.1 bits (183), Expect = 5.2e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 

Query: 112 PADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 171
           P  FL ++ G  V+VKL  G++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR 
Sbjct: 16  PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 75

Query: 172 NNVLYI 178
           NNVLY+
Sbjct: 76  NNVLYV 81

[Close]
BLAST of CmoCh04G000090 vs. TAIR10
Match: AT2G14285.1 (AT2G14285.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 

Query: 132 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 178
           ++Y+G LA +D YMN+ +  TEEY++GQL    G+  IR NNVLY+
Sbjct: 1   MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYV 46

[Close]
BLAST of CmoCh04G000090 vs. NCBI nr
Match: gi|449445280|ref|XP_004140401.1| (PREDICTED: sm-like protein LSM36B [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MSIGGEKGSASTKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSIGGEKGSASTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 190
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS 92

[Close]
BLAST of CmoCh04G000090 vs. NCBI nr
Match: gi|566182882|ref|XP_002311269.2| (hypothetical protein POPTR_0008s07780g, partial [Populus trichocarpa])

HSP 1 Score: 181.0 bits (458), Expect = 1.9e-42
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 1 

Query: 94  RKPEMSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 153
           RK +MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTE
Sbjct: 40  RKKKMSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTE 99

Query: 154 EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 100 EYVNGQLKNKYGDAFIRGNNVLYISTSKRTLADGA 134

[Close]
BLAST of CmoCh04G000090 vs. NCBI nr
Match: gi|225434160|ref|XP_002278412.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKNKYGDAFIRGNNVLYISTSKRTLAEG+
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 91

[Close]
BLAST of CmoCh04G000090 vs. NCBI nr
Match: gi|567899304|ref|XP_006442140.1| (hypothetical protein CICLE_v10023071mg [Citrus clementina])

HSP 1 Score: 177.2 bits (448), Expect = 2.7e-41
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

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BLAST of CmoCh04G000090 vs. NCBI nr
Match: gi|1009112725|ref|XP_015869890.1| (PREDICTED: sm-like protein LSM36B [Ziziphus jujuba])

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-41
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 1 

Query: 98  MSIGGEKGSASTKTPADFLKSIRGHPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 157
           MS GGEKGSA+TKTPADFLKSIRG PVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
Sbjct: 1   MSSGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60

Query: 158 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGS 189
           GQLKNKYGDAFIRGNNVLYISTSKRTLA+G+
Sbjct: 61  GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91

The following BLAST results are available for this feature:
BLAST of CmoCh04G000090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM6B_ARATH4.8e-3884.62Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1[more]
LSM6A_ARATH2.0e-3686.05Sm-like protein LSM6A OS=Arabidopsis thaliana GN=LSM6A PE=1 SV=1[more]
LSM6_MOUSE2.3e-3283.54U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=1 SV=1[more]
LSM6_HUMAN2.3e-3283.54U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6 PE=1 SV=1[more]
LSM6_LACBS1.4e-2469.86U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor (strain S238N-H82 /... [more]
BLAST of CmoCh04G000090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSS9_CUCSA1.6e-4398.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G266840 PE=4 SV=1[more]
B9HHZ6_POPTR1.3e-4292.63Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0008s07780g P... [more]
D7T2I1_VITVI8.6e-4295.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00940 PE=3 SV=... [more]
A0A067DYC9_CITSI1.9e-4194.51Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034564mg PE=3 SV=1[more]
V4TUF1_9ROSI1.9e-4194.51Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023071mg PE=3 SV=1[more]
BLAST of CmoCh04G000090 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43810.12.7e-3984.62 Small nuclear ribonucleoprotein family protein[more]
AT3G59810.11.1e-3786.05 Small nuclear ribonucleoprotein family protein[more]
AT4G30220.25.2e-1448.48 small nuclear ribonucleoprotein F[more]
AT2G14285.11.5e-0850.00 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmoCh04G000090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445280|ref|XP_004140401.1|2.2e-4398.91PREDICTED: sm-like protein LSM36B [Cucumis sativus][more]
gi|566182882|ref|XP_002311269.2|1.9e-4292.63hypothetical protein POPTR_0008s07780g, partial [Populus trichocarpa][more]
gi|225434160|ref|XP_002278412.1|1.2e-4195.60PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Vitis vinifera][more]
gi|567899304|ref|XP_006442140.1|2.7e-4194.51hypothetical protein CICLE_v10023071mg [Citrus clementina][more]
gi|1009112725|ref|XP_015869890.1|3.6e-4194.51PREDICTED: sm-like protein LSM36B [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G000090.1CmoCh04G000090.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 114..178
score: 3.9
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 114..179
score: 2.8
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 112..179
score: 1.28
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 115..179
score: 1.0
NoneNo IPR availablePANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 101..187
score: 1.3
NoneNo IPR availablePANTHERPTHR11021:SF5U6 SNRNA-ASSOCIATED SM PROTEIN-RELATEDcoord: 101..187
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G000090CmaCh04G000070Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G000090CmaCh04G009730Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G000090ClCG11G000770Watermelon (Charleston Gray)cmowcgB627
CmoCh04G000090Cp4.1LG01g06640Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G000090Cp4.1LG01g07920Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G000090Cla97C11G207110Watermelon (97103) v2cmowmbB703
CmoCh04G000090Carg00090Silver-seed gourdcarcmoB0924
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G000090CmoCh04G010500Cucurbita moschata (Rifu)cmocmoB464
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G000090Wild cucumber (PI 183967)cmocpiB760
CmoCh04G000090Cucumber (Chinese Long) v2cmocuB734
CmoCh04G000090Watermelon (97103) v1cmowmB736
CmoCh04G000090Cucumber (Gy14) v2cgybcmoB641
CmoCh04G000090Cucumber (Chinese Long) v3cmocucB0862
CmoCh04G000090Cucumber (Chinese Long) v3cmocucB0893
CmoCh04G000090Wax gourdcmowgoB0898