Cla97C07G137210 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G137210
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	VQ motif-containing protein 1-like
Location	Cla97Chr07 : 24683931 .. 24684173 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

mRNA sequence

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Coding sequence (CDS)

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Protein sequence

MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFKEFQRVLREMPRIDELYSD

Homology

[Close]

BLAST of Cla97C07G137210 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_4G075740 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-28
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VV VAEE  R T SARNS LLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of Cla97C07G137210 vs. NCBI nr
Match: XP_022942030.1 (VQ motif-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGL-LRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP V   EENR T    +SGL + DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of Cla97C07G137210 vs. NCBI nr
Match: XP_023543644.1 (VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGL-LRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP    AEE R T +  +S L + DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDP---TAEETRQTGAGWSSNLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of Cla97C07G137210 vs. NCBI nr
Match: XP_017423422.1 (PREDICTED: VQ motif-containing protein 1-like [Vigna angularis] >KOM42707.1 hypothetical protein LR48_Vigan05g031100 [Vigna angularis] >BAT93164.1 hypothetical protein VIGAN_07207900 [Vigna angularis var. angularis])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--VAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD   +   A+ NRH +     S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of Cla97C07G137210 vs. NCBI nr
Match: XP_022636061.1 (VQ motif-containing protein 1 [Vigna radiata var. radiata])

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVV--AVAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YVQTDA SFK+VVQKLTGKD     A  + NRH +   + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 68 QRVLREMPRIDEL 78
           R+LREMP I++L
Sbjct: 72 DRLLREMPPINDL 84

[Close]

BLAST of Cla97C07G137210 vs. TrEMBL
Match: tr|A0A0A0KXJ0|A0A0A0KXJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VV VAEE  R T SARNS LLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of Cla97C07G137210 vs. TrEMBL
Match: tr|A0A0L9UJH2|A0A0L9UJH2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--VAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD   +   A+ NRH +     S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of Cla97C07G137210 vs. TrEMBL
Match: tr|A0A0S3SJY7|A0A0S3SJY7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G207900 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--VAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD   +   A+ NRH +     S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of Cla97C07G137210 vs. TrEMBL
Match: tr|A0A1S3U0D9|A0A1S3U0D9_VIGRR (VQ motif-containing protein 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106760578 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVV--AVAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YVQTDA SFK+VVQKLTGKD     A  + NRH +   + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 68 QRVLREMPRIDEL 78
           R+LREMP I++L
Sbjct: 72 DRLLREMPPINDL 84

[Close]

BLAST of Cla97C07G137210 vs. TrEMBL
Match: tr|A0A022RDS2|A0A022RDS2_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a023640mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-11
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFKEFQRV 67
          +VVII+T+YV+TDA+SFK+VVQ+LTGK   +A A      +  R+S L R  SFK+F R+
Sbjct: 15 KVVIINTEYVETDAESFKSVVQRLTGKHSTLAAAAAEEKLKPPRSSVLERGVSFKDFDRM 74

Query: 68 LREMPRIDELY 79
          L+E+P +DELY
Sbjct: 75 LKELPSLDELY 85

[Close]

BLAST of Cla97C07G137210 vs. Swiss-Prot
Match: sp|Q8VYI5|VQ10_ARATH (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--------------------VAEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ +VA                    + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  RSARNSGLLRDSSFKEFQRVLREMPRIDELY 79
                      ++  EF R+ +EMP ++ELY
Sbjct: 73  HGXXXXXXXXXTT-TEFDRLFKEMPHMEELY 102

[Close]

BLAST of Cla97C07G137210 vs. Swiss-Prot
Match: sp|Q1G3U8|VQ1_ARATH (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK----- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ VVA   +  +  S +  G  +DSS +     
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVA---DGPYEFSGQGYG-GKDSSQRFCGVG 70

Query: 68 ----------EFQRVLREMPRIDELYS 80
                    EF    REMP + ELY+
Sbjct: 71 KEAERGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of Cla97C07G137210 vs. TAIR10
Match: AT1G78410.1 (VQ motif-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--------------------VAEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ +VA                    + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  RSARNSGLLRDSSFKEFQRVLREMPRIDELY 79
                      ++  EF R+ +EMP ++ELY
Sbjct: 73  HGXXXXXXXXXTT-TEFDRLFKEMPHMEELY 102

[Close]

BLAST of Cla97C07G137210 vs. TAIR10
Match: AT1G17147.1 (VQ motif-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK----- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ VVA   +  +  S +  G  +DSS +     
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVA---DGPYEFSGQGYG-GKDSSQRFCGVG 70

Query: 68 ----------EFQRVLREMPRIDELYS 80
                    EF    REMP + ELY+
Sbjct: 71 KEAERGVETTEFDSFFREMPPVGELYN 93

The following BLAST results are available for this feature:

BLAST of Cla97C07G137210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53544.1	3.7e-28	90.12	hypothetical protein Csa_4G075740 [Cucumis sativus]	[more]
XP_022942030.1	7.3e-16	74.65	VQ motif-containing protein 1 [Cucurbita moschata]	[more]
XP_023543644.1	1.8e-14	71.83	VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_017423422.1	1.9e-11	56.58	PREDICTED: VQ motif-containing protein 1-like [Vigna angularis] >KOM42707.1 hypo...	[more]
XP_022636061.1	3.2e-11	60.27	VQ motif-containing protein 1 [Vigna radiata var. radiata]	[more]

BLAST of Cla97C07G137210 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXJ0\|A0A0A0KXJ0_CUCSA	2.5e-28	90.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1	[more]
tr\|A0A0L9UJH2\|A0A0L9UJH2_PHAAN	1.2e-11	56.58	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE...	[more]
tr\|A0A0S3SJY7\|A0A0S3SJY7_PHAAN	1.2e-11	56.58	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
tr\|A0A1S3U0D9\|A0A1S3U0D9_VIGRR	2.1e-11	60.27	VQ motif-containing protein 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC1...	[more]
tr\|A0A022RDS2\|A0A022RDS2_ERYGU	6.1e-11	53.52	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a023640mg PE...	[more]

BLAST of Cla97C07G137210 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYI5\|VQ10_ARATH	1.2e-06	36.26	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
sp\|Q1G3U8\|VQ1_ARATH	1.2e-06	42.53	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of Cla97C07G137210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78410.1	6.8e-08	36.26	VQ motif-containing protein	[more]
AT1G17147.1	6.8e-08	42.53	VQ motif-containing protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G137210.1	Cla97C07G137210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..36 e-value: 7.2E-11 score: 41.3
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 43..79
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 1-RELATED	coord: 4..44
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 1-RELATED	coord: 43..79
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 4..44

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G137210	Cla005401	Watermelon (97103) v1	wmwmbB168
Cla97C07G137210	Csa4G075740	Cucumber (Chinese Long) v2	cuwmbB321
Cla97C07G137210	MELO3C016156	Melon (DHL92) v3.5.1	mewmbB491
Cla97C07G137210	ClCG07G010500	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G137210	CSPI04G07620	Wild cucumber (PI 183967)	cpiwmbB331
Cla97C07G137210	CmaCh16G004570	Cucurbita maxima (Rimu)	cmawmbB350
Cla97C07G137210	CmoCh16G004910	Cucurbita moschata (Rifu)	cmowmbB335
Cla97C07G137210	CsGy4G007530	Cucumber (Gy14) v2	cgybwmbB302
Cla97C07G137210	MELO3C016156.2	Melon (DHL92) v3.6.1	medwmbB484
Cla97C07G137210	Carg11382	Silver-seed gourd	carwmbB0682
Cla97C07G137210	CsaV3_4G007830	Cucumber (Chinese Long) v3	cucwmbB329
Cla97C07G137210	Bhi01G002432	Wax gourd	wgowmbB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G137210	Silver-seed gourd	carwmbB0043
Cla97C07G137210	Cucumber (Gy14) v2	cgybwmbB304
Cla97C07G137210	Cucurbita maxima (Rimu)	cmawmbB782
Cla97C07G137210	Cucurbita moschata (Rifu)	cmowmbB756
Cla97C07G137210	Wild cucumber (PI 183967)	cpiwmbB329
Cla97C07G137210	Cucumber (Chinese Long) v3	cucwmbB327
Cla97C07G137210	Cucumber (Chinese Long) v2	cuwmbB319
Cla97C07G137210	Bottle gourd (USVL1VR-Ls)	lsiwmbB411