Cla97C07G137210.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G137210.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	VQ motif-containing protein 1-like
Location	Cla97Chr07 : 24683931 .. 24684173 (+)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

mRNA sequence

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Coding sequence (CDS)

ATGGAAGCAACTCACTCAACTAGGGTTGTGATTATTGACACCAAGTATGTACAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAAAAGCTGACGGGGAAAGATCCGGTAGTCGCAGTGGCGGAGGAGAACCGACATACCCGCAGCGCCCGGAACTCGGGTCTTTTGAGAGATTCATCGTTCAAGGAGTTCCAGAGAGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Protein sequence

MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFKEFQRVLREMPRIDELYSD

Homology

[Close]

BLAST of Cla97C07G137210.1 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_4G075740 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-28
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VV VAEE  R T SARNS LLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of Cla97C07G137210.1 vs. NCBI nr
Match: XP_022942030.1 (VQ motif-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 53/71 (74.65%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGL-LRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP V   EENR T    +SGL + DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of Cla97C07G137210.1 vs. NCBI nr
Match: XP_023543644.1 (VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 51/71 (71.83%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGL-LRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKDP    AEE R T +  +S L + DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDP---TAEETRQTGAGWSSNLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of Cla97C07G137210.1 vs. NCBI nr
Match: XP_017423422.1 (PREDICTED: VQ motif-containing protein 1-like [Vigna angularis] >KOM42707.1 hypothetical protein LR48_Vigan05g031100 [Vigna angularis] >BAT93164.1 hypothetical protein VIGAN_07207900 [Vigna angularis var. angularis])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--VAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD   +   A+ NRH +     S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of Cla97C07G137210.1 vs. NCBI nr
Match: XP_022636061.1 (VQ motif-containing protein 1 [Vigna radiata var. radiata])

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVV--AVAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YVQTDA SFK+VVQKLTGKD     A  + NRH +   + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 68 QRVLREMPRIDEL 78
           R+LREMP I++L
Sbjct: 72 DRLLREMPPINDL 84

[Close]

BLAST of Cla97C07G137210.1 vs. TrEMBL
Match: tr|A0A0A0KXJ0|A0A0A0KXJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-28
Identity = 73/81 (90.12%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEE-NRHTRSARNSGLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD VV VAEE  R T SARNS LLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of Cla97C07G137210.1 vs. TrEMBL
Match: tr|A0A0L9UJH2|A0A0L9UJH2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--VAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD   +   A+ NRH +     S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of Cla97C07G137210.1 vs. TrEMBL
Match: tr|A0A0S3SJY7|A0A0S3SJY7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G207900 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--VAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKD   +   A+ NRH +     S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of Cla97C07G137210.1 vs. TrEMBL
Match: tr|A0A1S3U0D9|A0A1S3U0D9_VIGRR (VQ motif-containing protein 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106760578 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVV--AVAEENRHTR-SARNSGLLRDSSFKEF 67
          +VVII+T+YVQTDA SFK+VVQKLTGKD     A  + NRH +   + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 68 QRVLREMPRIDEL 78
           R+LREMP I++L
Sbjct: 72 DRLLREMPPINDL 84

[Close]

BLAST of Cla97C07G137210.1 vs. TrEMBL
Match: tr|A0A022RDS2|A0A022RDS2_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a023640mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.1e-11
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFKEFQRV 67
          +VVII+T+YV+TDA+SFK+VVQ+LTGK   +A A      +  R+S L R  SFK+F R+
Sbjct: 15 KVVIINTEYVETDAESFKSVVQRLTGKHSTLAAAAAEEKLKPPRSSVLERGVSFKDFDRM 74

Query: 68 LREMPRIDELY 79
          L+E+P +DELY
Sbjct: 75 LKELPSLDELY 85

[Close]

BLAST of Cla97C07G137210.1 vs. Swiss-Prot
Match: sp|Q8VYI5|VQ10_ARATH (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--------------------VAEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ +VA                    + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  RSARNSGLLRDSSFKEFQRVLREMPRIDELY 79
                      ++  EF R+ +EMP ++ELY
Sbjct: 73  HGXXXXXXXXXTT-TEFDRLFKEMPHMEELY 102

[Close]

BLAST of Cla97C07G137210.1 vs. Swiss-Prot
Match: sp|Q1G3U8|VQ1_ARATH (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK----- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ VVA   +  +  S +  G  +DSS +     
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVA---DGPYEFSGQGYG-GKDSSQRFCGVG 70

Query: 68 ----------EFQRVLREMPRIDELYS 80
                    EF    REMP + ELY+
Sbjct: 71 KEAERGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of Cla97C07G137210.1 vs. TAIR10
Match: AT1G78410.1 (VQ motif-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVA--------------------VAEENRHT 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+ +VA                    + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  RSARNSGLLRDSSFKEFQRVLREMPRIDELY 79
                      ++  EF R+ +EMP ++ELY
Sbjct: 73  HGXXXXXXXXXTT-TEFDRLFKEMPHMEELY 102

[Close]

BLAST of Cla97C07G137210.1 vs. TAIR10
Match: AT1G17147.1 (VQ motif-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVVAVAEENRHTRSARNSGLLRDSSFK----- 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ VVA   +  +  S +  G  +DSS +     
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVA---DGPYEFSGQGYG-GKDSSQRFCGVG 70

Query: 68 ----------EFQRVLREMPRIDELYS 80
                    EF    REMP + ELY+
Sbjct: 71 KEAERGVETTEFDSFFREMPPVGELYN 93

The following BLAST results are available for this feature:

BLAST of Cla97C07G137210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53544.1	3.7e-28	90.12	hypothetical protein Csa_4G075740 [Cucumis sativus]	[more]
XP_022942030.1	7.3e-16	74.65	VQ motif-containing protein 1 [Cucurbita moschata]	[more]
XP_023543644.1	1.8e-14	71.83	VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_017423422.1	1.9e-11	56.58	PREDICTED: VQ motif-containing protein 1-like [Vigna angularis] >KOM42707.1 hypo...	[more]
XP_022636061.1	3.2e-11	60.27	VQ motif-containing protein 1 [Vigna radiata var. radiata]	[more]

BLAST of Cla97C07G137210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXJ0\|A0A0A0KXJ0_CUCSA	2.5e-28	90.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1	[more]
tr\|A0A0L9UJH2\|A0A0L9UJH2_PHAAN	1.2e-11	56.58	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE...	[more]
tr\|A0A0S3SJY7\|A0A0S3SJY7_PHAAN	1.2e-11	56.58	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
tr\|A0A1S3U0D9\|A0A1S3U0D9_VIGRR	2.1e-11	60.27	VQ motif-containing protein 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC1...	[more]
tr\|A0A022RDS2\|A0A022RDS2_ERYGU	6.1e-11	53.52	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a023640mg PE...	[more]

BLAST of Cla97C07G137210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8VYI5\|VQ10_ARATH	1.2e-06	36.26	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
sp\|Q1G3U8\|VQ1_ARATH	1.2e-06	42.53	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of Cla97C07G137210.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78410.1	6.8e-08	36.26	VQ motif-containing protein	[more]
AT1G17147.1	6.8e-08	42.53	VQ motif-containing protein	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C07G137210	Cla97C07G137210	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C07G137210.1.exon.1	Cla97C07G137210.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C07G137210.1.CDS.1	Cla97C07G137210.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C07G137210.1	Cla97C07G137210.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..36 e-value: 7.2E-11 score: 41.3
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 43..79
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 1-RELATED	coord: 4..44
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 1-RELATED	coord: 43..79
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 4..44