CSPI04G07620 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G07620
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	VQ motif-containing protein
Location	Chr4 : 5490818 .. 5491223 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTAAAGAAAGAAAAATAAATATTCTGCATAAAAGAAGTTCTCAGTTTCCCAAATGGAAGCACCTCATTCAACTAGGGTTGTGATTATTGACACCAAGTACGTGCAAACGGATGCCAAGAGCTTCAAGACAGTGGTGCAAAAGCTGACAGGCAAAGATTCGGTGGTGACAGTGGCTGAGGAAACCCGACGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCATCGTTCAAAGAGTTTCAAAGGGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGAAATGAATAGTACATATACATATAGATTATATATATTTTACATATTACTTGATGATCTATGTTACACTTATAGTATTATTTGTACTTTATTGATATAGAATTCT

mRNA sequence

ATGGAAGCACCTCATTCAACTAGGGTTGTGATTATTGACACCAAGTACGTGCAAACGGATGCCAAGAGCTTCAAGACAGTGGTGCAAAAGCTGACAGGCAAAGATTCGGTGGTGACAGTGGCTGAGGAAACCCGACGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCATCGTTCAAAGAGTTTCAAAGGGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Coding sequence (CDS)

ATGGAAGCACCTCATTCAACTAGGGTTGTGATTATTGACACCAAGTACGTGCAAACGGATGCCAAGAGCTTCAAGACAGTGGTGCAAAAGCTGACAGGCAAAGATTCGGTGGTGACAGTGGCTGAGGAAACCCGACGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCATCGTTCAAAGAGTTTCAAAGGGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Homology

[Close]

BLAST of CSPI04G07620 vs. Swiss-Prot
Match: VQ10_ARATH (VQ motif-containing protein 10 OS=Arabidopsis thaliana GN=VQ10 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--------------------VAEETRRQ 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+++V                     + E+TR+ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  TGSARNSSLLRDSSFKEFQRVLREMPRIDELY 80
            G        R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGGG--RMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of CSPI04G07620 vs. Swiss-Prot
Match: VQ1_ARATH (VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-06
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVA------------EETRRQTGSARNSS 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK++VV               + ++R  G  + + 
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 LLRDSSFKEFQRVLREMPRIDELYS 81
            R     EF    REMP + ELY+
Sbjct: 71 --RGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of CSPI04G07620 vs. TrEMBL
Match: A0A0A0KXJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.8e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 82
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CSPI04G07620 vs. TrEMBL
Match: A0A0S3SJY7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G207900 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--VAEETRRQTGSARNSSLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKDS  +   A+  R   G    S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 82
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of CSPI04G07620 vs. TrEMBL
Match: A0A0L9UJH2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-12
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--VAEETRRQTGSARNSSLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKDS  +   A+  R   G    S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 82
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of CSPI04G07620 vs. TrEMBL
Match: V7BXC0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G051400g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.0e-12
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--VAEETRRQTGSARNSSLLRDSSFKEF 67
           +VVII+T+YV+TDA SFK+VVQKLTGKDS  +   AE  R   G    S  +RD SFK+F
Sbjct: 55  KVVIINTQYVETDATSFKSVVQKLTGKDSDTSEPQAERKRHDKGGTERSFFMRDLSFKDF 114

Query: 68  QRVLREMPRIDELYSD 82
            R+LREMP +++L++D
Sbjct: 115 DRLLREMPPLNDLWAD 130

[Close]

BLAST of CSPI04G07620 vs. TrEMBL
Match: A0A0B2RBV5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034103 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.4e-11
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRR----QTGSARNSSLLRDSSFK 67
          +VVII+T+YV+TDA SFK+VVQKLTGKDS +  A+  R+    + G    S L+RD SFK
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDILDAKVQRKRHDHKGGVEGRSFLMRDMSFK 71

Query: 68 EFQRVLREMPRIDELYSD 82
          EF R+L EMP +++L++D
Sbjct: 72 EFDRLLSEMPPLNDLWAD 89

[Close]

BLAST of CSPI04G07620 vs. TAIR10
Match: AT1G78410.1 (AT1G78410.1 VQ motif-containing protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.3e-09
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 1


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--------------------VAEETRRQ 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+++V                     + E+TR+ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  TGSARNSSLLRDSSFKEFQRVLREMPRIDELY 80
            G        R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGGG--RMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of CSPI04G07620 vs. TAIR10
Match: AT1G17147.1 (AT1G17147.1 VQ motif-containing protein)

HSP 1 Score: 53.5 bits (127), Expect = 7.0e-08
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVA------------EETRRQTGSARNSS 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK++VV               + ++R  G  + + 
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 LLRDSSFKEFQRVLREMPRIDELYS 81
            R     EF    REMP + ELY+
Sbjct: 71 --RGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of CSPI04G07620 vs. NCBI nr
Match: gi|700198386|gb|KGN53544.1| (hypothetical protein Csa_4G075740 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.3e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 82
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CSPI04G07620 vs. NCBI nr
Match: gi|659101790|ref|XP_008451795.1| (PREDICTED: uncharacterized protein LOC103492973 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 3.8e-32
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVV V EE RRQTGSARNSSLLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 82
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CSPI04G07620 vs. NCBI nr
Match: gi|920699482|gb|KOM42707.1| (hypothetical protein LR48_Vigan05g031100 [Vigna angularis])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--VAEETRRQTGSARNSSLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKDS  +   A+  R   G    S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 82
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of CSPI04G07620 vs. NCBI nr
Match: gi|593697488|ref|XP_007149217.1| (hypothetical protein PHAVU_005G051400g [Phaseolus vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 5.8e-12
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--VAEETRRQTGSARNSSLLRDSSFKEF 67
           +VVII+T+YV+TDA SFK+VVQKLTGKDS  +   AE  R   G    S  +RD SFK+F
Sbjct: 55  KVVIINTQYVETDATSFKSVVQKLTGKDSDTSEPQAERKRHDKGGTERSFFMRDLSFKDF 114

Query: 68  QRVLREMPRIDELYSD 82
            R+LREMP +++L++D
Sbjct: 115 DRLLREMPPLNDLWAD 130

[Close]

BLAST of CSPI04G07620 vs. NCBI nr
Match: gi|950968160|ref|XP_014499485.1| (PREDICTED: VQ motif-containing protein 1-like [Vigna radiata var. radiata])

HSP 1 Score: 77.8 bits (190), Expect = 9.8e-12
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVA--EETRRQTGSARNSSLLRDSSFKEF 67
          +VVII+T+YVQTDA SFK+VVQKLTGKDS    A  +  R   G  + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 68 QRVLREMPRIDEL 79
           R+LREMP I++L
Sbjct: 72 DRLLREMPPINDL 84

The following BLAST results are available for this feature:

BLAST of CSPI04G07620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ10_ARATH	1.1e-07	38.04	VQ motif-containing protein 10 OS=Arabidopsis thaliana GN=VQ10 PE=1 SV=1	[more]
VQ1_ARATH	1.2e-06	40.00	VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1	[more]

BLAST of CSPI04G07620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXJ0_CUCSA	5.8e-35	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G075740 PE=4 SV=1	[more]
A0A0S3SJY7_PHAAN	1.8e-12	56.58	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G207900 PE=...	[more]
A0A0L9UJH2_PHAAN	1.8e-12	56.58	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g031100 PE=4 SV=1	[more]
V7BXC0_PHAVU	4.0e-12	55.26	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G051400g PE=4 SV=1	[more]
A0A0B2RBV5_GLYSO	4.4e-11	53.85	Uncharacterized protein OS=Glycine soja GN=glysoja_034103 PE=4 SV=1	[more]

BLAST of CSPI04G07620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78410.1	6.3e-09	38.04	VQ motif-containing protein	[more]
AT1G17147.1	7.0e-08	40.00	VQ motif-containing protein	[more]

BLAST of CSPI04G07620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198386\|gb\|KGN53544.1\|	8.3e-35	100.00	hypothetical protein Csa_4G075740 [Cucumis sativus]	[more]
gi\|659101790\|ref\|XP_008451795.1\|	3.8e-32	95.06	PREDICTED: uncharacterized protein LOC103492973 [Cucumis melo]	[more]
gi\|920699482\|gb\|KOM42707.1\|	2.6e-12	56.58	hypothetical protein LR48_Vigan05g031100 [Vigna angularis]	[more]
gi\|593697488\|ref\|XP_007149217.1\|	5.8e-12	55.26	hypothetical protein PHAVU_005G051400g [Phaseolus vulgaris]	[more]
gi\|950968160\|ref\|XP_014499485.1\|	9.8e-12	60.27	PREDICTED: VQ motif-containing protein 1-like [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G07620.1	CSPI04G07620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..37 score: 7.7
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 8..79 score: 1.3
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN	coord: 8..79 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G07620	Cla005401	Watermelon (97103) v1	cpiwmB311
CSPI04G07620	Csa4G075740	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G07620	MELO3C016156	Melon (DHL92) v3.5.1	cpimeB300
CSPI04G07620	ClCG07G010500	Watermelon (Charleston Gray)	cpiwcgB341
CSPI04G07620	MELO3C016156.2	Melon (DHL92) v3.6.1	cpimedB303
CSPI04G07620	CsaV3_4G007830	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G07620	Cla97C07G137210	Watermelon (97103) v2	cpiwmbB331
CSPI04G07620	Bhi01G002432	Wax gourd	cpiwgoB367
CSPI04G07620	CmaCh16G004570	Cucurbita maxima (Rimu)	cmacpiB341
CSPI04G07620	CmoCh16G004910	Cucurbita moschata (Rifu)	cmocpiB332
CSPI04G07620	Cp4.1LG14g03270	Cucurbita pepo (Zucchini)	cpecpiB223
CSPI04G07620	CsGy4G007530	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G07620	Carg11382	Silver-seed gourd	carcpiB0687

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G07620	Watermelon (97103) v2	cpiwmbB329
CSPI04G07620	Wax gourd	cpiwgoB385
CSPI04G07620	Cucurbita maxima (Rimu)	cmacpiB342
CSPI04G07620	Cucurbita maxima (Rimu)	cmacpiB714
CSPI04G07620	Cucurbita moschata (Rifu)	cmocpiB331
CSPI04G07620	Cucurbita moschata (Rifu)	cmocpiB707
CSPI04G07620	Melon (DHL92) v3.5.1	cpimeB312
CSPI04G07620	Watermelon (Charleston Gray)	cpiwcgB339
CSPI04G07620	Watermelon (97103) v1	cpiwmB314
CSPI04G07620	Cucurbita pepo (Zucchini)	cpecpiB396
CSPI04G07620	Bottle gourd (USVL1VR-Ls)	cpilsiB304
CSPI04G07620	Bottle gourd (USVL1VR-Ls)	cpilsiB314
CSPI04G07620	Melon (DHL92) v3.6.1	cpimedB294
CSPI04G07620	Silver-seed gourd	carcpiB0051
CSPI04G07620	Silver-seed gourd	carcpiB0686