Carg11382 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11382
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	VQ motif containing protein
Location	Cucurbita_argyrosperma_scaffold_025 : 638276 .. 638491 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTCTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAATTGATTAG

mRNA sequence

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTCTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAATTGATTAG

Coding sequence (CDS)

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTCTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAATTGATTAG

Protein sequence

MAAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAEENRHGDGARNSSLLRDSSFKEFQRVLREMPRID

Homology

[Close]

BLAST of Carg11382 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_4G075740 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 6.7e-21
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD---PVAEENRHGDG-ARNSSLLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD    VAEE R   G ARNSSLLRDSSF
Sbjct: 3  APHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRID 72
          KEFQRVLREMPRID
Sbjct: 63 KEFQRVLREMPRID 76

[Close]

BLAST of Carg11382 vs. NCBI nr
Match: XP_022942030.1 (VQ motif-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-16
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 3  AYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAEENRHGDGARNSSL-LRDSSFKEFQ 62
          A+STRVVIIDTKYV TDAKSFKTVVQKLTGKDP  EENR   G  +S L + DSSFK+FQ
Sbjct: 6  AHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAVEENRQTSGGWSSGLVITDSSFKKFQ 65

Query: 63 RVLREMPRI 71
            LREMP I
Sbjct: 66 TELREMPTI 74

[Close]

BLAST of Carg11382 vs. NCBI nr
Match: XP_023543644.1 (VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 3  AYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAEENRH-GDGARNSSLLRDSSFKEFQ 62
          A+STRVVIIDTKYV TDAKSFKTVVQKLTGKDP AEE R  G G  ++ ++ DSSFK+FQ
Sbjct: 6  AHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPTAEETRQTGAGWSSNLVITDSSFKKFQ 65

Query: 63 RVLREMPRI 71
            LREMP I
Sbjct: 66 TELREMPTI 74

[Close]

BLAST of Carg11382 vs. NCBI nr
Match: XP_017423422.1 (PREDICTED: VQ motif-containing protein 1-like [Vigna angularis] >KOM42707.1 hypothetical protein LR48_Vigan05g031100 [Vigna angularis] >BAT93164.1 hypothetical protein VIGAN_07207900 [Vigna angularis var. angularis])

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSLLRDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH   G   S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRID 72
           R+LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Carg11382 vs. NCBI nr
Match: XP_017423423.1 (PREDICTED: VQ motif-containing protein 1-like [Vigna angularis])

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-11
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSLLRDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH   G   S L+RD  FKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSVLMRDLPFKEF 71

Query: 67 QRVLREMPRID 72
           R+LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Carg11382 vs. TAIR10
Match: AT1G17147.1 (VQ motif-containing protein)

HSP 1 Score: 49.7 bits (117), Expect = 8.8e-07
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA-----EENRHGDGARNSS---------LL 66
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V      E +  G G ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 67 RDSSFKEFQRVLREMPRI 71
          R     EF    REMP +
Sbjct: 71 RGVETTEFDSFFREMPPV 88

[Close]

BLAST of Carg11382 vs. TAIR10
Match: AT1G78410.1 (VQ motif-containing protein)

HSP 1 Score: 45.8 bits (107), Expect = 1.3e-05
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD----------PVAEENRHGDGARNSSLLRDS- 66
          +VV I+T+YV+TDA+SFKTVVQ+LTGK+          P A + R  DG   S +  D+ 
Sbjct: 13 KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDG--GSKIGEDTR 72

Query: 67 -------------SFKEFQRVLREMPRID 72
                       +  EF R+ +EMP ++
Sbjct: 73 QLHGXXXXXXXXXTTTEFDRLFKEMPHME 99

[Close]

BLAST of Carg11382 vs. Swiss-Prot
Match: sp|Q1G3U8|VQ1_ARATH (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-05
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA-----EENRHGDGARNSS---------LL 66
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V      E +  G G ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 67 RDSSFKEFQRVLREMPRI 71
          R     EF    REMP +
Sbjct: 71 RGVETTEFDSFFREMPPV 88

[Close]

BLAST of Carg11382 vs. Swiss-Prot
Match: sp|Q8VYI5|VQ10_ARATH (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD----------PVAEENRHGDGARNSSLLRDS- 66
          +VV I+T+YV+TDA+SFKTVVQ+LTGK+          P A + R  DG   S +  D+ 
Sbjct: 13 KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDG--GSKIGEDTR 72

Query: 67 -------------SFKEFQRVLREMPRID 72
                       +  EF R+ +EMP ++
Sbjct: 73 QLHGXXXXXXXXXTTTEFDRLFKEMPHME 99

[Close]

BLAST of Carg11382 vs. TrEMBL
Match: tr|A0A0A0KXJ0|A0A0A0KXJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-21
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD---PVAEENRHGDG-ARNSSLLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD    VAEE R   G ARNSSLLRDSSF
Sbjct: 3  APHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRID 72
          KEFQRVLREMPRID
Sbjct: 63 KEFQRVLREMPRID 76

[Close]

BLAST of Carg11382 vs. TrEMBL
Match: tr|A0A0L9UJH2|A0A0L9UJH2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-12
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSLLRDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH   G   S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRID 72
           R+LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Carg11382 vs. TrEMBL
Match: tr|A0A0S3SJY7|A0A0S3SJY7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G207900 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.4e-12
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSLLRDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH   G   S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRID 72
           R+LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Carg11382 vs. TrEMBL
Match: tr|A0A1S3U0D9|A0A1S3U0D9_VIGRR (VQ motif-containing protein 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106760578 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.4e-11
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSLLRDSSFKEF 66
          +VVII+T+YVQTDA SFK+VVQKLTGKD        + NRH   G + S L+RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 67 QRVLREMPRID 72
           R+LREMP I+
Sbjct: 72 DRLLREMPPIN 82

[Close]

BLAST of Carg11382 vs. TrEMBL
Match: tr|V7BXC0|V7BXC0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G051400g PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-10
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 7   RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSLLRDSSFKEF 66
           +VVII+T+YV+TDA SFK+VVQKLTGKD     P AE  RH   G   S  +RD SFK+F
Sbjct: 55  KVVIINTQYVETDATSFKSVVQKLTGKDSDTSEPQAERKRHDKGGTERSFFMRDLSFKDF 114

Query: 67  QRVLREMPRID 72
            R+LREMP ++
Sbjct: 115 DRLLREMPPLN 125

The following BLAST results are available for this feature:

BLAST of Carg11382 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53544.1	6.7e-21	85.14	hypothetical protein Csa_4G075740 [Cucumis sativus]	[more]
XP_022942030.1	2.9e-16	73.91	VQ motif-containing protein 1 [Cucurbita moschata]	[more]
XP_023543644.1	1.1e-15	72.46	VQ motif-containing protein 1 [Cucurbita pepo subsp. pepo]	[more]
XP_017423422.1	1.3e-11	61.97	PREDICTED: VQ motif-containing protein 1-like [Vigna angularis] >KOM42707.1 hypo...	[more]
XP_017423423.1	4.8e-11	60.56	PREDICTED: VQ motif-containing protein 1-like [Vigna angularis]	[more]

BLAST of Carg11382 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17147.1	8.8e-07	42.31	VQ motif-containing protein	[more]
AT1G78410.1	1.3e-05	37.08	VQ motif-containing protein	[more]

BLAST of Carg11382 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1G3U8\|VQ1_ARATH	1.6e-05	42.31	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]
sp\|Q8VYI5\|VQ10_ARATH	2.3e-04	37.08	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]

BLAST of Carg11382 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXJ0\|A0A0A0KXJ0_CUCSA	4.4e-21	85.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1	[more]
tr\|A0A0L9UJH2\|A0A0L9UJH2_PHAAN	8.4e-12	61.97	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE...	[more]
tr\|A0A0S3SJY7\|A0A0S3SJY7_PHAAN	8.4e-12	61.97	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]
tr\|A0A1S3U0D9\|A0A1S3U0D9_VIGRR	5.4e-11	60.56	VQ motif-containing protein 1-like OS=Vigna radiata var. radiata OX=3916 GN=LOC1...	[more]
tr\|V7BXC0\|V7BXC0_PHAVU	2.1e-10	57.75	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G051400g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11382-RA	Carg11382-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 10..35 e-value: 5.1E-11 score: 41.7
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 5..41
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 1-RELATED	coord: 5..41

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11382	Cla005401	Watermelon (97103) v1	carwmB0652
Carg11382	Csa4G075740	Cucumber (Chinese Long) v2	carcuB0676
Carg11382	MELO3C016156	Melon (DHL92) v3.5.1	carmeB0652
Carg11382	ClCG07G010500	Watermelon (Charleston Gray)	carwcgB0637
Carg11382	CSPI04G07620	Wild cucumber (PI 183967)	carcpiB0687
Carg11382	CmaCh16G004570	Cucurbita maxima (Rimu)	carcmaB0924
Carg11382	CmoCh16G004910	Cucurbita moschata (Rifu)	carcmoB0898
Carg11382	Cp4.1LG14g03270	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11382	CsGy4G007530	Cucumber (Gy14) v2	carcgybB0651
Carg11382	MELO3C016156.2	Melon (DHL92) v3.6.1	carmedB0662
Carg11382	CsaV3_4G007830	Cucumber (Chinese Long) v3	carcucB0689
Carg11382	Cla97C07G137210	Watermelon (97103) v2	carwmbB0682
Carg11382	Bhi01G002432	Wax gourd	carwgoB0770

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11382	Silver-seed gourd	carcarB050
Carg11382	Cucumber (Gy14) v2	carcgybB0652
Carg11382	Cucurbita maxima (Rimu)	carcmaB0927
Carg11382	Cucurbita moschata (Rifu)	carcmoB0902
Carg11382	Cucurbita pepo (Zucchini)	carcpeB0929
Carg11382	Wild cucumber (PI 183967)	carcpiB0686
Carg11382	Cucumber (Chinese Long) v2	carcuB0677
Carg11382	Cucumber (Chinese Long) v3	carcucB0688
Carg11382	Bottle gourd (USVL1VR-Ls)	carlsiB596