CmoCh16G004910 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	VQ motif protein
Location	Cmo_Chr16 : 2370768 .. 2370986 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTTTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAGTTGGTGAATGA

mRNA sequence

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTTTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAGTTGGTGAATGA

Coding sequence (CDS)

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTTTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAGTTGGTGAATGA

Homology

[Close]

BLAST of CmoCh16G004910 vs. Swiss-Prot
Match: VQ1_ARATH (VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.4e-07
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA-----EENRHGDGARNSS---------FL 66
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V      E +  G G ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 67 RDSSFKEFQRVLREMPRVGE 73
          R     EF    REMP VGE
Sbjct: 71 RGVETTEFDSFFREMPPVGE 90

[Close]

BLAST of CmoCh16G004910 vs. TrEMBL
Match: A0A0A0KXJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-20
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD---PVAEENRHGDG-ARNSSFLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD    VAEE R   G ARNSS LRDSSF
Sbjct: 3  APHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRVGE 73
          KEFQRVLREMPR+ E
Sbjct: 63 KEFQRVLREMPRIDE 77

[Close]

BLAST of CmoCh16G004910 vs. TrEMBL
Match: A0A0S3SJY7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G207900 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-12
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHGDGARNSSFL-RDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH  G    SFL RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRVGE 73
           R+LREMP + +
Sbjct: 72 DRLLREMPPIND 83

[Close]

BLAST of CmoCh16G004910 vs. TrEMBL
Match: A0A0L9UJH2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-12
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHGDGARNSSFL-RDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH  G    SFL RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRVGE 73
           R+LREMP + +
Sbjct: 72 DRLLREMPPIND 83

[Close]

BLAST of CmoCh16G004910 vs. TrEMBL
Match: V7BXC0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G051400g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-11
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 7   RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSFLRDSSFKEF 66
           +VVII+T+YV+TDA SFK+VVQKLTGKD     P AE  RH   G   S F+RD SFK+F
Sbjct: 55  KVVIINTQYVETDATSFKSVVQKLTGKDSDTSEPQAERKRHDKGGTERSFFMRDLSFKDF 114

Query: 67  QRVLREMPRVGE 73
            R+LREMP + +
Sbjct: 115 DRLLREMPPLND 126

[Close]

BLAST of CmoCh16G004910 vs. TrEMBL
Match: A0A0B2RBV5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_034103 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-08
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDP-------VAEENRHGDGARNSSFL-RDSSFK 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD          + + H  G    SFL RD SFK
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDILDAKVQRKRHDHKGGVEGRSFLMRDMSFK 71

Query: 67 EFQRVLREMPRVGE 73
          EF R+L EMP + +
Sbjct: 72 EFDRLLSEMPPLND 85

[Close]

BLAST of CmoCh16G004910 vs. TAIR10
Match: AT1G17147.1 (AT1G17147.1 VQ motif-containing protein)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-08
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA-----EENRHGDGARNSS---------FL 66
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V      E +  G G ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 67 RDSSFKEFQRVLREMPRVGE 73
          R     EF    REMP VGE
Sbjct: 71 RGVETTEFDSFFREMPPVGE 90

[Close]

BLAST of CmoCh16G004910 vs. TAIR10
Match: AT1G78410.1 (AT1G78410.1 VQ motif-containing protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.8e-06
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 1


Query: 7   RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----------------------PVAEENR-- 66
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+                        + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 67  HGDGARNSSFLRDSSFKEFQRVLREMPRVGE 73
           HG G       R  +  EF R+ +EMP + E
Sbjct: 73  HGGGGGGG---RMGTTTEFDRLFKEMPHMEE 100

[Close]

BLAST of CmoCh16G004910 vs. NCBI nr
Match: gi|700198386|gb|KGN53544.1| (hypothetical protein Csa_4G075740 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD---PVAEENRHGDG-ARNSSFLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD    VAEE R   G ARNSS LRDSSF
Sbjct: 3  APHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRVGE 73
          KEFQRVLREMPR+ E
Sbjct: 63 KEFQRVLREMPRIDE 77

[Close]

BLAST of CmoCh16G004910 vs. NCBI nr
Match: gi|659101790|ref|XP_008451795.1| (PREDICTED: uncharacterized protein LOC103492973 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 58/75 (77.33%), Postives = 60/75 (80.00%), Query Frame = 1


Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA----EENRHGDGARNSSFLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD V     E  R    ARNSS LRDSSF
Sbjct: 3  ATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRVGE 73
          KEFQRVLREMPR+ E
Sbjct: 63 KEFQRVLREMPRIDE 77

[Close]

BLAST of CmoCh16G004910 vs. NCBI nr
Match: gi|920699482|gb|KOM42707.1| (hypothetical protein LR48_Vigan05g031100 [Vigna angularis])

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHGDGARNSSFL-RDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH  G    SFL RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRVGE 73
           R+LREMP + +
Sbjct: 72 DRLLREMPPIND 83

[Close]

BLAST of CmoCh16G004910 vs. NCBI nr
Match: gi|950968160|ref|XP_014499485.1| (PREDICTED: VQ motif-containing protein 1-like [Vigna radiata var. radiata])

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHGDGARNSSFL-RDSSFKEF 66
          +VVII+T+YVQTDA SFK+VVQKLTGKD        + NRH  G    SFL RD SFKEF
Sbjct: 12 KVVIINTQYVQTDATSFKSVVQKLTGKDSDTYGAKVDRNRHDKGGTKRSFLMRDVSFKEF 71

Query: 67 QRVLREMPRVGE 73
           R+LREMP + +
Sbjct: 72 DRLLREMPPIND 83

[Close]

BLAST of CmoCh16G004910 vs. NCBI nr
Match: gi|593697488|ref|XP_007149217.1| (hypothetical protein PHAVU_005G051400g [Phaseolus vulgaris])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-11
Identity = 42/72 (58.33%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 7   RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHG-DGARNSSFLRDSSFKEF 66
           +VVII+T+YV+TDA SFK+VVQKLTGKD     P AE  RH   G   S F+RD SFK+F
Sbjct: 55  KVVIINTQYVETDATSFKSVVQKLTGKDSDTSEPQAERKRHDKGGTERSFFMRDLSFKDF 114

Query: 67  QRVLREMPRVGE 73
            R+LREMP + +
Sbjct: 115 DRLLREMPPLND 126

The following BLAST results are available for this feature:

BLAST of CmoCh16G004910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VQ1_ARATH	6.4e-07	45.00	VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1	[more]

BLAST of CmoCh16G004910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXJ0_CUCSA	1.6e-20	81.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G075740 PE=4 SV=1	[more]
A0A0S3SJY7_PHAAN	1.6e-12	61.11	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G207900 PE=...	[more]
A0A0L9UJH2_PHAAN	1.6e-12	61.11	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g031100 PE=4 SV=1	[more]
V7BXC0_PHAVU	2.3e-11	58.33	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G051400g PE=4 SV=1	[more]
A0A0B2RBV5_GLYSO	1.8e-08	52.70	Uncharacterized protein OS=Glycine soja GN=glysoja_034103 PE=4 SV=1	[more]

BLAST of CmoCh16G004910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17147.1	3.6e-08	45.00	VQ motif-containing protein	[more]
AT1G78410.1	5.8e-06	36.26	VQ motif-containing protein	[more]

BLAST of CmoCh16G004910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198386\|gb\|KGN53544.1\|	2.3e-20	81.33	hypothetical protein Csa_4G075740 [Cucumis sativus]	[more]
gi\|659101790\|ref\|XP_008451795.1\|	1.1e-19	77.33	PREDICTED: uncharacterized protein LOC103492973 [Cucumis melo]	[more]
gi\|920699482\|gb\|KOM42707.1\|	2.3e-12	61.11	hypothetical protein LR48_Vigan05g031100 [Vigna angularis]	[more]
gi\|950968160\|ref\|XP_014499485.1\|	2.5e-11	59.72	PREDICTED: VQ motif-containing protein 1-like [Vigna radiata var. radiata]	[more]
gi\|593697488\|ref\|XP_007149217.1\|	3.3e-11	58.33	hypothetical protein PHAVU_005G051400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004910.1	CmoCh16G004910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 10..35 score: 2.3
None	No IPR available	PANTHER	PTHR34777	FAMILY NOT NAMED	coord: 7..41 score: 2.4
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN	coord: 7..41 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G004910	CmaCh16G004570	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004910	Cla005401	Watermelon (97103) v1	cmowmB302
CmoCh16G004910	Csa4G075740	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G004910	MELO3C016156	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G004910	ClCG07G010500	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G004910	CSPI04G07620	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G004910	Cp4.1LG14g03270	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G004910	MELO3C016156.2	Melon (DHL92) v3.6.1	cmomedB337
CmoCh16G004910	CsaV3_4G007830	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G004910	Cla97C07G137210	Watermelon (97103) v2	cmowmbB335
CmoCh16G004910	Bhi01G002432	Wax gourd	cmowgoB0433
CmoCh16G004910	CsGy4G007530	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G004910	Carg11382	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004910	Cucurbita pepo (Zucchini)	cmocpeB315
CmoCh16G004910	Bottle gourd (USVL1VR-Ls)	cmolsiB314
CmoCh16G004910	Silver-seed gourd	carcmoB0054
CmoCh16G004910	Cucumber (Chinese Long) v3	cmocucB0387
CmoCh16G004910	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh16G004910	Cucurbita maxima (Rimu)	cmacmoB703
CmoCh16G004910	Wild cucumber (PI 183967)	cmocpiB331
CmoCh16G004910	Cucumber (Chinese Long) v2	cmocuB324