Cla97C02G033440 (gene) Watermelon (97103) v2

Overview
NameCla97C02G033440
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 6963780 .. 6964315 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGTAGTTTCTCTTTCTCGCATGATAAGTTAATGATATCTTTGTTTAGTATAACAATATCCCTTACAATAATTTGCAATTTTTCATGCATTATACTTAAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

mRNA sequence

ATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

Coding sequence (CDS)

ATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

Protein sequence

MKIKTEMENIEAEEDESFKDVDTKPKMAMNPSCDHVLTRTSEKPECSDQPKGEGGLSKPDTGFDTTKSGPELERIQKNEIDEMVKALYRRVEELEEKIRQQSRFPSNSDCGSCNEQHSEDEVLGPVNNWNLEKVITFFPNSSSFQ
Homology
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BLAST of Cla97C02G033440 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 0 

Query: 2   KIKTEMENIEAEEDESFKDVDTKPKMAM--NPSCDHVLT-RTSEKPECSDQPKGEGGLSK 61
           K + EMEN + EEDES KDVD K K+ M  NPSCD+V T R S + E SD+ KGEGGLSK
Sbjct: 432 KKRREMENRDTEEDESLKDVDIKRKVTMNKNPSCDYVSTRRASGRSESSDRVKGEGGLSK 491

Query: 62  PDTGFDTTKSGPELERIQKNEIDEMVKALYRRVEELEEKIRQQSRFPSNSDCGSCNEQHS 121
           P  GF TTK  P+ ER Q+ E +E +K LYRR++ELEE+IR + + P  S+ GSC+EQHS
Sbjct: 492 PSAGFHTTKLAPKRERTQEKEDEEEIKMLYRRIKELEEQIRLK-QIPPISEHGSCDEQHS 551

Query: 122 EDEVLGPVNNWNLEK 134
           ++E+LGP NNWN +K
Sbjct: 552 DEEILGPANNWNFKK 565

The following BLAST results are available for this feature:
BLAST of Cla97C02G033440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022148697.12.5e-3057.78uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha... [more]
BLAST of Cla97C02G033440 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cla97C02G033440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G033440 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G033440.1Cla97C02G033440.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..119

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G033440Cla016066Watermelon (97103) v1wmwmbB317
Cla97C02G033440ClCG02G006470Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G033440Lsi03G005460Bottle gourd (USVL1VR-Ls)lsiwmbB226
Cla97C02G033440Bhi05G000987Wax gourdwgowmbB242
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G033440Watermelon (97103) v2wmbwmbB101
Cla97C02G033440Silver-seed gourdcarwmbB0193
Cla97C02G033440Silver-seed gourdcarwmbB0303
Cla97C02G033440Silver-seed gourdcarwmbB0394
Cla97C02G033440Silver-seed gourdcarwmbB0477
Cla97C02G033440Cucumber (Gy14) v2cgybwmbB190
Cla97C02G033440Cucumber (Gy14) v2cgybwmbB503
Cla97C02G033440Cucumber (Gy14) v1cgywmbB395
Cla97C02G033440Cucurbita maxima (Rimu)cmawmbB104
Cla97C02G033440Cucurbita maxima (Rimu)cmawmbB342
Cla97C02G033440Cucurbita maxima (Rimu)cmawmbB531
Cla97C02G033440Cucurbita maxima (Rimu)cmawmbB744
Cla97C02G033440Cucurbita moschata (Rifu)cmowmbB088
Cla97C02G033440Cucurbita moschata (Rifu)cmowmbB512
Cla97C02G033440Cucurbita moschata (Rifu)cmowmbB717
Cla97C02G033440Wild cucumber (PI 183967)cpiwmbB203
Cla97C02G033440Wild cucumber (PI 183967)cpiwmbB554
Cla97C02G033440Cucumber (Chinese Long) v3cucwmbB201
Cla97C02G033440Cucumber (Chinese Long) v3cucwmbB550
Cla97C02G033440Cucumber (Chinese Long) v2cuwmbB198
Cla97C02G033440Cucumber (Chinese Long) v2cuwmbB530
Cla97C02G033440Bottle gourd (USVL1VR-Ls)lsiwmbB326
Cla97C02G033440Melon (DHL92) v3.6.1medwmbB166
Cla97C02G033440Melon (DHL92) v3.6.1medwmbB421
Cla97C02G033440Melon (DHL92) v3.5.1mewmbB180
Cla97C02G033440Watermelon (Charleston Gray)wcgwmbB224
Cla97C02G033440Watermelon (97103) v1wmwmbB202
Cla97C02G033440Wax gourdwgowmbB175