Lsi03G005460 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi03G005460
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 6603937 .. 6609234 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGAGGTAGTTTCTCGCATGATAAGGCATTGATCTTTGTTTAGCATAACAGTATCCCTTACAATAATTTGCAATTTGTCATGTACCGTATTTAAGGATGAGTCGTCCAAGGATGTTGATACTAAGCCTAAGGTGGCCATGAATCCTAGTTGTGATTATGTCTCGACTCGAACATCGGGGAAACCGGAATGCTCTGATCAACCGAAGGGAGAAGGTGGTTCGAGTAATCCTAGCGCAAGCATTGAGACAACAAAATCTGGTCCTGAACTAGAGAGAATGCAAAAGAATGAAATTGATAAGATGGTCAAAGCGTTACATCGACGTGTTGAGGAGTTGGAAGAGAAAATGCGACAACAGTTTCCTCCCAATTCCGAGTGTGGCAGTTGTAATGAGCAACAACATTCAGAAAACGAGGTATCGGGACCTGTTAAGAATTGGAGCTTGGAAAAGGTGATCACATTATTTGTTGAAAATATGAAAAGCTAATTTGAATAATGGAAGTTTTAATATTAAACTTGACTTGTGACTTTTGGTTTTTGTAACCAATAGTGTCCATTGAGCTCTTTGGGAGTTTAGAAGTTATGAGAATTAAGTAAGATTGTTTATGATTTCTTAACCATTGAAATTCTATGGTTATAGTTTGTAAGCCTATATAAAGGCATGCTTTGTTGAATCAAGATATCACTTTCTCCACATTTGTGACATCCACACCTTTTTTCTTTTCTAACAAAGTGGTATCAGAGCCATTGTAAAATTTGAGAGAAAAATGGCCAACGGTGGGATGAGTTCGATTCAATTGCCGATGCTTACCAAGCTCAACTATGACAGTTGGAGTATCAAGATAAAAGCATTACTAGGAGCACAAGACATGTGGGAGATTGTGCAGAACGGTTTTCAAGAGGCGGAAGCTGGAGCTGATCAAGCGCAAAGAGATGCGCTAAAGGAGACAAGAAAGAAGGACAAGAAGGCCCTCTATATCTTGTACCAATCAGTTGACGAAGACACATTTCAGACCATTTGTGATGCCGAGACATCAAAGGCAGCATGGGACAAGCTCCAATCAACTCATAGAGGAGCTGATCGTGTTAAAAAGGTACGATTACAAACTTTACGTGCTAAGTTTGAATCATTACAGATGAAGGAGACGGAGGTGATAGCAGAATATCACACCAAAGTTATGACTATTGTCAACCAATTGAGACGGAACGGTGAAGAAATCGCCGACGTTCGTGTCATGGAAAAGATTCTACGGAGCCTAAATACTAAGTTTGAGATCATTGCCACGACAATCGAGGAGACAAAAGATCTCGAGATCATGACGATTGAACAATTTATAGGCTCATTACAAGCCTACGAGGAGAAAAAGAAAAGAAAGATGGAGCAATCGGAGACCATCGAACAACTTCTCCAACTCAAACTCAAGGAGGAGAATAGTCGTGGACGTGGAAGAAGTCGTGGTGGAAGAGGCCGTGGTGGAAGAGGTGAATCCAACATTGATGTTTCTCCAAACTCAAGTGAATCCTCAAGAGGAAGAGGAGGTCGAGGCCGTGGAAGACGTGGTGGAAGGTCCGGAAGAGATAAATCTCAGGTAAAATGTTACAATTGCAATAAATATGGACATTATGCGAATGAGTGTTACTCATCTCAATCAGAGTCAATCGATCGGAAGCAACATGACCGATCAATCGCTAACACATCCAAAGCGCGTGAAGGGCAGTCCAATTATGCAGAGGAGAACGGAACCTTATTCATGGTTTCAAAGGGAGAAGAAGAGAGTCAAGATAGCAAGTGGTATCTTGACACGGGAGCCTCAAATCACATGTGTGGGAACCGAGAGATGTTTGCAGAGTTGAACGAGATGGAAAAAGGTAATATTGCCTTTGGAGACAATTCTTTGGCCGCCATCAAAGGAATAGGTAAAATTCTCATTCGGTTGAAAAATGGAGAAAATCAATATATTACAAATGTTTATTACATTCCCAATATAAAAAATAATATATTGAGTGTAGGACAATTGTTAGAGAAAGGTTTTGAAGTTCAAATGAAAAATAATTGTTTGTATTTGAGAGATAATCATGAGAGACTTATTGCTAAAGTCATCATGACAAAAAACCGAATGTTTCCTTTGAATATATGTAATGATGTTCCGAAATGCTTGAAGACGTGTTATGAGGATGTTTCTTGGCTATGCCATCTACGGTTCGGGCATCTCAATTTTGGAAGTCTAGAAGACTTGTCGAAGAAGAAGATGGTGCGGGGTTTACCGCATATTCAGAAGCCGAACCAAGTGTGTGAAGGGTGTCTACTTGGAAAACATCATCGGAGTAGTTTTCCAAAGGAGTCTATGACAAGAGCCAACAAACCTCTAGAACTCATCCATGCTGATGTGTGTGGAGCAATCAAACCGGAGTCTCATGATAAAAGTAAATACTTCCTTCTCTTTATTGATGATTTTTCTAGAAAAACATGGGTGTACTTTTTGAAGGAAAAATCGGAAGTATTTGAGATCTTCAAGAAATTTAAGGCGCGTGTGGAGAATGAAAGCAACCTTACAATTAAGGCCATGAGAACAGATCGAGGTGGTGAATTCACATCAAATGAGTTCAAACAGTTTTGTGATGAAAAAGGCATTCGACGCCCATTAACAGTGCCAAGGACACCGCAACAAAATGGCGTGGCGGAGAGGAAAAATCGAACAATCTTAAACATGGCAAGAAGCATGTTGAAGACGAAAAAGATGCCTAAGGAATTTTGGGCGGAAGCCGTAGCTTGTGCGGTTTATTTAACAAATCGAGCACCAACCAAAAGTGTGCTTGACAAGACGCCTCAAAAAGCATGGAATGGAAGAAAGCCTGGAATTGGTCACTTCAAGGTGTTTGGAAGTATTGCATATGCTCATGTGTCGGAGGAAAGAAGGATCAAGCTTGACGATCGAAGCGAAAAACTCATATTCATCGGCTATGATGCAAGCTCAAAGGGTTATCGCCTTTACAATCCTTTGAATGGGAAGGTAACTATTAGTCGTGATGTTGTTTTTGATGAAGAAGCTTCTTGGGATTGGAATATACAGACGGAGGAGTATGATTTTCTTCCATACTTTGAGGAAGACGATGAGCCAACCAGGGAGAGGGGGAAGTTTTGCCCATTCCAATTTCACCTCAATCAACCGATCAGTCATCTAATGCATCATCCAACGGAACGGAGGCACTTTCTAGTGACTCGGAGAATGAAATTGGCCCAAGAGGAACCCGAAGTCTACAAGAACTTAATGAGGTAAGCGAAAATCAAAATGACATAATTTTCTATTGTCTTTTTGGTGATTGTGAGCCCATTAATTTCCAAGAAGCCATTGCAAATAAAAAATGGAAGGATGCAATGGATGAAGAAATTCGAGCGATAGAGAAAAACAACACATGGGAGTTGACCAAGCTTCCAAAAGGACAAAAACCAATCGGAGTGAAGTGGGTTTACAAGACAAAGAGAAAGGCCAATGGCGAAGTTGAGAGGCACAAAGCGAGACTAGTAGCAAAAGGGTATAGTCAACAACATGGCATCAACTATGATGAGGTATTTGCCCCTGTTGTTCGCCTTGAAACTATTCGTTTGATTATTGCTTTGGCAGCCTATAATCATTGGAAGATACATCAAATGGATGTCAAATCGGCATTCTTGAATGGAATTCTTGAGGAAGAGGTCTATGTGGAACAACCATTGGGCTATGAAGTCAAGGGTGAAGAAGATAAGGTACTTCGATTGAAGAAGGCTCTTTACGGTTTGAAGCAAGCACCGAGAGCATGGAATTCGAGGATTGACAAGTATTTTAGAGAGAATAAGTATATGAAGTGTCCTTATGAGCATGCCCTATACATTAAAATGCAAGGTGAAAGTATATTAATAATTTGTTTATATGTTGACGATTTAATATTTACTGGAAACGATCCTTGCATGTTTGATGAATTTAAAAGGGAGATGACAAAGGAGTTTGAAATGACGGACATTGGTCTCATGAGTTATTATCTTGGGATCGAGGTCAAACAAAGTGAATATGGGATTTTTATATCTCAAGAGGGCTATGCTAGAGAAATGCTCAAAAGGTTCAATATGGATGATGCTAATCCGGTTGGAACACCAATGGAATGTGGAGTCAAAATCACCAAACAAAATGGAGGAGAGAAGGTAGATTCTACGTACTTAAAAAGCTTGGTTGGAAGTTTGAGATACTTGACATGCACAAGACCGGATATTCTTTATTCAGTTGGAATTATTAGTCGATTTGTGGAGGAGCCGACAACAACACATTGTAAAATGGCAAAGAGGATACTTCGCTATATCAAAGGGACAATTGGGTATGGTCTTTCTTATGTCTCTTCTAAAAATTTTGATACTGTTGGTTATTGTGATAGTGATTGGAGTAGTGATTTGGATGATCGAAAAAGCACCACGGGGTTTGTGTTTTTTATTGGTGAAACGGCGTTCACATGGATGTCAAAAAAACAACCCATAGTCACATTATCAACATGTGAGGCGGAGTACGTAGCGGCAACTTCATGTGTATGTCATGCAATTTGGCTAAGAAACTTACTGAAGGAGTTGAAGTTCCAAATCGAGGATCCAATGGAAATTTTTGTTGATAATAAATCAGCCATTGCCTTAGCCAAAAATCCGGTATTTCATGGAAGGAGCAAGCACATTGATACCCGATTTCATTACATTCGGGATTGCATTATGAAGAAAGAAGTAGAACTCAAATATGTCAAGTCACAAGACCAAGCAGCGGACATTTTCACAAAGCCCCTCAAGTTGGAGACTTTCATCAAAATGAGGAGTTTACTTGGTGTAACAAATCAAGTTTAAGGGGGGGTGTTGAAAATATGAAAAGCTAATTTGAATAATGGAAGTTTTAATATTAAACTTGACTTGTGACTTTTGGTTTTTGTAACCAATAGTGTCCATTGAGCTCTTTGGGAGTTTAGAAGTTATGAGAATTAAGTAAGATTGTTTATGATTTCTTAACCATTGAAATTCTATGGTTATAGTTTGTAAGCCTATATAAAGGCATGCTTTGTTGAATCAAGATATCACTTTCTCCACATTTGTGACATCCACACCTTTTTTCTTTTCTAACATTATTTTCCAATCTTGTATCTTTTCAATAGTTTAGATGTCATTTGAATTAATTTTTCCATGTTTCATATATGCAGGACAATTGAAATTGTTTCACTCATAGAAGGATATTTTGTACAGCCTACATTAGTATAA

mRNA sequence

ATGAACATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGAGGATGAGTCGTCCAAGGATGTTGATACTAAGCCTAAGGTGGCCATGAATCCTAGTTGTGATTATGTCTCGACTCGAACATCGGGGAAACCGGAATGCTCTGATCAACCGAAGGGAGAAGGTGGTTCGAGTAATCCTAGCGCAAGCATTGAGACAACAAAATCTGGTCCTGAACTAGAGAGAATGCAAAAGAATGAAATTGATAAGATGGTCAAAGCGTTACATCGACGTGTTGAGGAGTTGGAAGAGAAAATGCGACAACAGTTTCCTCCCAATTCCGAGACAATTGAAATTGTTTCACTCATAGAAGGATATTTTGTACAGCCTACATTAGTATAA

Coding sequence (CDS)

ATGAACATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGAGGATGAGTCGTCCAAGGATGTTGATACTAAGCCTAAGGTGGCCATGAATCCTAGTTGTGATTATGTCTCGACTCGAACATCGGGGAAACCGGAATGCTCTGATCAACCGAAGGGAGAAGGTGGTTCGAGTAATCCTAGCGCAAGCATTGAGACAACAAAATCTGGTCCTGAACTAGAGAGAATGCAAAAGAATGAAATTGATAAGATGGTCAAAGCGTTACATCGACGTGTTGAGGAGTTGGAAGAGAAAATGCGACAACAGTTTCCTCCCAATTCCGAGACAATTGAAATTGTTTCACTCATAGAAGGATATTTTGTACAGCCTACATTAGTATAA

Protein sequence

MNIKTEMENIEAEEEDESSKDVDTKPKVAMNPSCDYVSTRTSGKPECSDQPKGEGGSSNPSASIETTKSGPELERMQKNEIDKMVKALHRRVEELEEKMRQQFPPNSETIEIVSLIEGYFVQPTLV
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G005460.1Lsi03G005460.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 78..98
scor

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G005460Cla016066Watermelon (97103) v1lsiwmB268
Lsi03G005460ClCG02G006470Watermelon (Charleston Gray)lsiwcgB233
Lsi03G005460Cla97C02G033440Watermelon (97103) v2lsiwmbB226
Lsi03G005460Bhi05G000987Wax gourdlsiwgoB316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G005460Wax gourdlsiwgoB314
Lsi03G005460Wax gourdlsiwgoB323
Lsi03G005460Wax gourdlsiwgoB344
Lsi03G005460Bottle gourd (USVL1VR-Ls)lsilsiB130
Lsi03G005460Bottle gourd (USVL1VR-Ls)lsilsiB132
Lsi03G005460Cucumber (Gy14) v1cgylsiB367
Lsi03G005460Cucumber (Gy14) v1cgylsiB568
Lsi03G005460Cucurbita maxima (Rimu)cmalsiB116
Lsi03G005460Cucurbita maxima (Rimu)cmalsiB309
Lsi03G005460Cucurbita maxima (Rimu)cmalsiB484
Lsi03G005460Cucurbita maxima (Rimu)cmalsiB662
Lsi03G005460Cucurbita moschata (Rifu)cmolsiB103
Lsi03G005460Cucurbita moschata (Rifu)cmolsiB411
Lsi03G005460Cucurbita moschata (Rifu)cmolsiB468
Lsi03G005460Cucurbita moschata (Rifu)cmolsiB650
Lsi03G005460Cucurbita pepo (Zucchini)cpelsiB208
Lsi03G005460Cucurbita pepo (Zucchini)cpelsiB348
Lsi03G005460Cucurbita pepo (Zucchini)cpelsiB454
Lsi03G005460Cucurbita pepo (Zucchini)cpelsiB543
Lsi03G005460Wild cucumber (PI 183967)cpilsiB188
Lsi03G005460Wild cucumber (PI 183967)cpilsiB278
Lsi03G005460Wild cucumber (PI 183967)cpilsiB536
Lsi03G005460Cucumber (Chinese Long) v2culsiB189
Lsi03G005460Cucumber (Chinese Long) v2culsiB279
Lsi03G005460Cucumber (Chinese Long) v2culsiB522
Lsi03G005460Melon (DHL92) v3.5.1lsimeB247
Lsi03G005460Melon (DHL92) v3.5.1lsimeB272
Lsi03G005460Watermelon (Charleston Gray)lsiwcgB242
Lsi03G005460Watermelon (Charleston Gray)lsiwcgB243
Lsi03G005460Watermelon (97103) v1lsiwmB255
Lsi03G005460Watermelon (97103) v1lsiwmB256
Lsi03G005460Cucumber (Gy14) v2cgyblsiB103
Lsi03G005460Cucumber (Gy14) v2cgyblsiB173
Lsi03G005460Cucumber (Gy14) v2cgyblsiB488
Lsi03G005460Melon (DHL92) v3.6.1lsimedB260
Lsi03G005460Melon (DHL92) v3.6.1lsimedB271
Lsi03G005460Melon (DHL92) v3.6.1lsimedB280
Lsi03G005460Melon (DHL92) v3.6.1lsimedB285
Lsi03G005460Silver-seed gourdcarlsiB167
Lsi03G005460Silver-seed gourdcarlsiB267
Lsi03G005460Silver-seed gourdcarlsiB342
Lsi03G005460Silver-seed gourdcarlsiB411
Lsi03G005460Cucumber (Chinese Long) v3cuclsiB128
Lsi03G005460Cucumber (Chinese Long) v3cuclsiB205
Lsi03G005460Cucumber (Chinese Long) v3cuclsiB300
Lsi03G005460Cucumber (Chinese Long) v3cuclsiB555
Lsi03G005460Watermelon (97103) v2lsiwmbB236
Lsi03G005460Watermelon (97103) v2lsiwmbB237
Lsi03G005460Watermelon (97103) v2lsiwmbB244