ClCG02G006470 (gene) Watermelon (Charleston Gray)

NameClCG02G006470
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionEn/Spm-like transposon protein
LocationCG_Chr02 : 7434860 .. 7436330 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAGGATAATGCAGCTCATGCCACAAATCCTCTCATGAGTGATTACAATCTAAATATTTCTAACACATCTCATATCAAGTTCGATTACAACAGGAGGAAAACACGTGGTCCAACTACAATGCCTGAAATTACTCGATGTAGTAGCCAGGGAGATAGAAAGGTAGTACAGTATAACGACTATGGACAACCAATTGGAGTGAATGCAGCAAAACTGAGGAGTTACATTGGCTCTTGTGTCCATTTCCATGTCCCAATTACTTATGCTACTTGGAAACATGTACCTAACAAGATTAAAGAAAAGATTTTAAAGATGATTCAGGTATAATCCATTTAACTTCTATTTTTGTTATTTTCTTAAATTCTCAAATTGAAGGTAATGGTATATATTATCTTGTATATCTGCAGGCTGGTTTTGTCATTGATGAAAAGGCAAAAAAGTCCATCTTACAAAATGCTGGTAATTCATTCCGTCAATTTAAAAGCTGGTTGACGACTCATTATATTATTCCTTTCAAAAATCAGCCAGATCGATTGGAAAATCCTCCAGATACTTATTCACACATTGAGAGACATCATTGGCACCAATTTGTCAAATCACGATTGAGCGAAGAGTTTCAGGTTTGTAGTCTTATGCTTTTAACTGATAGGCTTCCTAATAATATTCTTTCACTGACATTATTGTGTTGAAGAATTTGAGGACTTTACAAGCACAAAGACGTGCGCAGAACAAATATAATCACCGATTGTCAAGAAAAGGTTATGCTAACTTTCTTGAAGAAATGGTAAGATTGTCTTTTATGGATATAACTACTTACTGATGGTTCTTGTTCTTGTTTGTGTGCCTGTATATGTGAAGGAGACAAATTATTTAACTAATTTTGAACTATTTGAGTGTAGAAAAACAGACATACTATTGAAAAAGCTGCTCAAATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGTAGTTTCTCTTTCTCGCATGATAAGTTAATGATATCTTTGTTTAGTATAACAATATCCCTTACAATAATTTGCAATTTTTCATGCATTATACTTAAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

mRNA sequence

ATGGAAAAGGATAATGCAGCTCATGCCACAAATCCTCTCATGAGTGATTACAATCTAAATATTTCTAACACATCTCATATCAAGTTCGATTACAACAGGAGGAAAACACGTGGTCCAACTACAATGCCTGAAATTACTCGATGTAGTAGCCAGGGAGATAGAAAGGTAGTACAGTATAACGACTATGGACAACCAATTGGAGTGAATGCAGCAAAACTGAGGAGTTACATTGGCTCTTGTGTCCATTTCCATGTCCCAATTACTTATGCTACTTGGAAACATGTACCTAACAAGATTAAAGAAAAGATTTTAAAGATGATTCAGAAAAACAGACATACTATTGAAAAAGCTGCTCAAATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

Coding sequence (CDS)

ATGGAAAAGGATAATGCAGCTCATGCCACAAATCCTCTCATGAGTGATTACAATCTAAATATTTCTAACACATCTCATATCAAGTTCGATTACAACAGGAGGAAAACACGTGGTCCAACTACAATGCCTGAAATTACTCGATGTAGTAGCCAGGGAGATAGAAAGGTAGTACAGTATAACGACTATGGACAACCAATTGGAGTGAATGCAGCAAAACTGAGGAGTTACATTGGCTCTTGTGTCCATTTCCATGTCCCAATTACTTATGCTACTTGGAAACATGTACCTAACAAGATTAAAGAAAAGATTTTAAAGATGATTCAGAAAAACAGACATACTATTGAAAAAGCTGCTCAAATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

Protein sequence

MEKDNAAHATNPLMSDYNLNISNTSHIKFDYNRRKTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATWKHVPNKIKEKILKMIQKNRHTIEKAAQMKIKTEMENIEAEEDESFKDVDTKPKMAMNPSCDHVLTRTSEKPECSDQPKGEGGLSKPDTGFDTTKSGPELERIQKNEIDEMVKALYRRVEELEEKIRQQSRFPSNSDCGSCNEQHSEDEVLGPVNNWNLEKVITFFPNSSSFQ
BLAST of ClCG02G006470 vs. TrEMBL
Match: A5BSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027409 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 52/190 (27.37%), Postives = 94/190 (49.47%), Query Frame = 1

Query: 33  RRKTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATW 92
           ++K RG TT+P +T+ +S   R+VV+YN+ GQP+G  + +L SY+G      VP++Y  W
Sbjct: 13  KKKVRGLTTLPHLTK-NSNPLRRVVKYNEKGQPVGPMSTQLFSYMGVLARTMVPLSYEHW 72

Query: 93  KHVPNKIKEKILKMIQKNRHTIEKAAQMKIKTEMENIEAEEDESFKDVDTKPKMAMNPSC 152
           + VPN +KEK+   ++       K+ +  + +   N + E     K V            
Sbjct: 73  RKVPNALKEKLWSFLEVKFVIESKSKKKLMGSNFSNSQIERRSKHKLV------------ 132

Query: 153 DHVLTRTSEKPECSDQPKGEGGLSKPDTGFDTTKSGPELERIQKNE-IDEMVKALYRRVE 212
            H L+R       +D+ K  G +S  +   D +       +  K E ++E VK    +++
Sbjct: 133 -HRLSRKG-YVGLADEMKKNGHISSIEE-VDRSLLWKMARQNNKGEYVNEAVKEKAEKID 186

Query: 213 ELEEKIRQQS 222
           EL++++ + S
Sbjct: 193 ELKKQVEEGS 186

BLAST of ClCG02G006470 vs. TrEMBL
Match: Q9ZUQ3_ARATH (En/Spm-like transposon protein OS=Arabidopsis thaliana GN=At2g12220 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1

Query: 33  RRKTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATW 92
           RR+ RGPT M  I +  +   R++V+Y   G P+G  + KL SY+G+ V  HVPIT  TW
Sbjct: 238 RRRQRGPTKMKNIAKDPTV--REIVEYTIMGDPVGPGSVKLASYVGTLVREHVPITIETW 297

Query: 93  KHVPNKIKEKILKMIQKNRHTIEKAAQMKIKTEMENI-EAEEDESFKDVDTKP 145
           K V   +K  + K +Q      E+  ++ +  +M ++  + +  + KD++  P
Sbjct: 298 KDVSQDMKTVLWKSVQARFELDEEFQRVAVLKQMGSLWRSYKSRTVKDINLAP 348

BLAST of ClCG02G006470 vs. TrEMBL
Match: D7SQ25_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01850 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 34/90 (37.78%), Postives = 58/90 (64.44%), Query Frame = 1

Query: 33  RRKTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATW 92
           ++K RG TT+P +T+ +S   R+VV+YN+ GQP+G  + +L SY+G      VP++Y  W
Sbjct: 13  KKKVRGLTTLPHLTK-NSNPLRRVVKYNEKGQPVGPMSTQLFSYMGVLARTMVPLSYEHW 72

Query: 93  KHVPNKIKEKILKMIQKNRHTIEKAAQMKI 123
           + VPN +KEK+   ++  +  IE  ++ K+
Sbjct: 73  RKVPNALKEKLWSFLEV-KFVIESKSKKKL 100

BLAST of ClCG02G006470 vs. TrEMBL
Match: A0A0A0LAN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G270810 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.9e-09
Identity = 29/71 (40.85%), Postives = 47/71 (66.20%), Query Frame = 1

Query: 37  RGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATWKHVP 96
           RGPT + E+    + G +  VQ+N++G+PIG  + K++SYIG  +   + +TY +WK VP
Sbjct: 26  RGPTIVSELAPTRNVGQQLSVQFNEHGKPIGATSKKMQSYIGVYIQQQISVTYKSWKQVP 85

Query: 97  NKIKEKILKMI 108
           N++K+KI   I
Sbjct: 86  NELKDKIYDCI 96

BLAST of ClCG02G006470 vs. TrEMBL
Match: A5B3H3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034823 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 53/215 (24.65%), Postives = 96/215 (44.65%), Query Frame = 1

Query: 22  SNTSHIKFDYNRR------KTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRS 81
           S   +I+ DY         K +G T  PEI +  S+G +  ++YN  G  IG N+ +L S
Sbjct: 352 SEAIYIREDYPEEEETPKVKHKGSTLKPEIAKNRSKGIKLKIEYNSLGSHIGKNSVELSS 411

Query: 82  YIGSCVHFHVPITYATWKHVPNKIKEKILKMI-------QKNRHTIEKAAQMKIKTEMEN 141
           Y+G+    HVPI   +WK VP + K+K+  +I       Q ++        ++ +T    
Sbjct: 412 YLGTITRTHVPIIIESWKKVPKETKKKLWDLIMTSFNVNQNSKRNCFLLMGIRFRTFKYK 471

Query: 142 IEAEEDESFKDVDTK----PKMAMNPSCDHVLTRTSEKPECSDQPKGEGGLSKPDTGFDT 201
           +  +   SFK+   K    P +      DH      ++       + EGG+ + D     
Sbjct: 472 LTKKYTLSFKNGPEKLKKPPSIYSFIQEDHWRQFVKDRLSEHFNLQAEGGIGRVDRSVLW 531

Query: 202 TKSGPELERIQKNEIDEMVKALYRRVEELEEKIRQ 220
            K+     R +K + +++ + +   ++EL EK ++
Sbjct: 532 KKA-----REKKGKFNKITEPVINMIDELLEKAKE 561

BLAST of ClCG02G006470 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 1

Query: 27  IKFDYNRRKTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVP 86
           I+++  R   RGPT MPE+    + G+RK ++YND GQP+G NA K++S+IG CV   +P
Sbjct: 16  IRYEVKRTARRGPTIMPELLHIRNSGERKTIEYNDRGQPVGENAKKMQSFIGVCVRQQIP 75

Query: 87  ITYATWKHVPNKIKEKILKMIQ-------KNRHTIEKAAQMKIKT 125
           +TY +WK VP ++K+ I   IQ        ++H I ++A  K ++
Sbjct: 76  VTYNSWKEVPQELKDTIFDCIQMSFVVDLSSKHYILQSASKKFRS 120

BLAST of ClCG02G006470 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1

Query: 27  IKFDYNRRKTRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVP 86
           I++   +   RGPT MPE+    + G+RK ++YND GQP+G NA K++S+IG CV   +P
Sbjct: 16  IRYKVKKTARRGPTIMPELLHIRNSGERKTIEYNDRGQPVGENAKKMQSFIGVCVRQQIP 75

Query: 87  ITYATWKHVPNKIKEKILKMIQ-------KNRHTIEKAAQMKIKT 125
           +TY +WK VP ++K+ I   IQ        ++H I ++A  K ++
Sbjct: 76  LTYNSWKEVPQELKDTIFDCIQMSFVVDLSSKHYILQSASKKFRS 120

BLAST of ClCG02G006470 vs. NCBI nr
Match: gi|659090010|ref|XP_008445784.1| (PREDICTED: uncharacterized protein LOC103488708 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 1

Query: 36  TRGPTTMPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATWKHV 95
           T GPT M EI R S  G ++VV+YN+ GQPIG +A KL+S+IG+ V  HVPI+Y +WK V
Sbjct: 718 TCGPTGMFEIVRVSCDGHKRVVEYNELGQPIGESATKLKSFIGTTVRVHVPISYQSWKDV 777

Query: 96  PNKIKEKILKMIQK 110
           P ++K+KI ++I+K
Sbjct: 778 PTELKDKIYELIEK 791

BLAST of ClCG02G006470 vs. NCBI nr
Match: gi|778691692|ref|XP_011653328.1| (PREDICTED: uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-13
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1

Query: 42  MPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATWKHVPNKIKE 101
           M +IT  SS+G + ++QYN+ GQPI  NA KL+S+IG  V FHVPITY+TW  VP ++KE
Sbjct: 1   MKDITHFSSEGWKMIIQYNELGQPIRPNATKLKSFIGRTVRFHVPITYSTWHAVPKEMKE 60

Query: 102 KILKMIQKNRHTIEK 117
           KI ++I+ +   +++
Sbjct: 61  KIYELIEDDVENLKR 75

BLAST of ClCG02G006470 vs. NCBI nr
Match: gi|778691681|ref|XP_011653325.1| (PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 7.5e-13
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1

Query: 42  MPEITRCSSQGDRKVVQYNDYGQPIGVNAAKLRSYIGSCVHFHVPITYATWKHVPNKIKE 101
           M +IT  SS+G + ++QYN+ GQPI  NA KL+S+IG  V FHVPITY+TW  VP ++KE
Sbjct: 1   MKDITHFSSEGWKMIIQYNELGQPIRPNATKLKSFIGRTVRFHVPITYSTWHAVPKEMKE 60

Query: 102 KILKMIQ 109
           KI ++I+
Sbjct: 61  KIYELIE 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A5BSR3_VITVI1.6e-0927.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027409 PE=4 SV=1[more]
Q9ZUQ3_ARATH7.9e-0932.74En/Spm-like transposon protein OS=Arabidopsis thaliana GN=At2g12220 PE=4 SV=1[more]
D7SQ25_VITVI7.9e-0937.78Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g01850 PE=4 SV=... [more]
A0A0A0LAN8_CUCSA7.9e-0940.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G270810 PE=4 SV=1[more]
A5B3H3_VITVI1.3e-0824.65Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034823 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659101935|ref|XP_008451868.1|2.5e-1640.00PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo][more]
gi|778691222|ref|XP_011653243.1|1.6e-1539.05PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus][more]
gi|659090010|ref|XP_008445784.1|1.4e-1454.05PREDICTED: uncharacterized protein LOC103488708 [Cucumis melo][more]
gi|778691692|ref|XP_011653328.1|4.4e-1349.33PREDICTED: uncharacterized protein LOC105435199 isoform X2 [Cucumis sativus][more]
gi|778691681|ref|XP_011653325.1|7.5e-1355.22PREDICTED: uncharacterized protein LOC105435199 isoform X1 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G006470.1ClCG02G006470.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 196..223
score: -coord: 115..135
scor

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G006470Cla016066Watermelon (97103) v1wcgwmB198
ClCG02G006470Cla97C02G033440Watermelon (97103) v2wcgwmbB138
ClCG02G006470Bhi05G000987Wax gourdwcgwgoB267
ClCG02G006470Lsi03G005460Bottle gourd (USVL1VR-Ls)lsiwcgB233
The following gene(s) are paralogous to this gene:

None