Cla97C02G033440.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G033440.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr02 : 6963780 .. 6964315 (+)
Sequence length	438

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGTAGTTTCTCTTTCTCGCATGATAAGTTAATGATATCTTTGTTTAGTATAACAATATCCCTTACAATAATTTGCAATTTTTCATGCATTATACTTAAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

mRNA sequence

ATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

Coding sequence (CDS)

ATGAAAATAAAAACAGAGATGGAAAACATAGAAGCAGAGGAGGATGAGTCCTTCAAGGATGTTGATACTAAGCCTAAGATGGCCATGAATCCTAGTTGTGATCATGTCTTGACTCGAACATCGGAGAAACCTGAATGCTCTGATCAACCAAAGGGAGAAGGAGGTTTGAGTAAACCCGACACAGGCTTTGACACAACAAAATCTGGTCCTGAACTAGAGAGAATTCAAAAGAACGAAATTGATGAGATGGTTAAAGCGTTATATCGACGTGTTGAGGAGTTGGAAGAGAAAATACGACAACAAAGTCGATTTCCTTCCAATTCCGATTGTGGCAGTTGCAATGAGCAACATTCAGAAGACGAGGTATTGGGGCCTGTTAACAATTGGAACTTGGAAAAGGTGATCACATTCTTTCCCAATTCTTCATCTTTCCAATAG

Protein sequence

MKIKTEMENIEAEEDESFKDVDTKPKMAMNPSCDHVLTRTSEKPECSDQPKGEGGLSKPDTGFDTTKSGPELERIQKNEIDEMVKALYRRVEELEEKIRQQSRFPSNSDCGSCNEQHSEDEVLGPVNNWNLEKVITFFPNSSSFQ

Homology

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BLAST of Cla97C02G033440.1 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 2   KIKTEMENIEAEEDESFKDVDTKPKMAM--NPSCDHVLT-RTSEKPECSDQPKGEGGLSK 61
           K + EMEN + EEDES KDVD K K+ M  NPSCD+V T R S + E SD+ KGEGGLSK
Sbjct: 432 KKRREMENRDTEEDESLKDVDIKRKVTMNKNPSCDYVSTRRASGRSESSDRVKGEGGLSK 491

Query: 62  PDTGFDTTKSGPELERIQKNEIDEMVKALYRRVEELEEKIRQQSRFPSNSDCGSCNEQHS 121
           P  GF TTK  P+ ER Q+ E +E +K LYRR++ELEE+IR + + P  S+ GSC+EQHS
Sbjct: 492 PSAGFHTTKLAPKRERTQEKEDEEEIKMLYRRIKELEEQIRLK-QIPPISEHGSCDEQHS 551

Query: 122 EDEVLGPVNNWNLEK 134
           ++E+LGP NNWN +K
Sbjct: 552 DEEILGPANNWNFKK 565

The following BLAST results are available for this feature:

BLAST of Cla97C02G033440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148697.1	2.5e-30	57.78	uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha...	[more]

BLAST of Cla97C02G033440.1 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C02G033440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G033440.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C02G033440	Cla97C02G033440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G033440.1.exon.1	Cla97C02G033440.1.exon.1	exon
Cla97C02G033440.1.exon.2	Cla97C02G033440.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G033440.1.CDS.1	Cla97C02G033440.1.CDS.1	CDS
Cla97C02G033440.1.CDS.2	Cla97C02G033440.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C02G033440.1	Cla97C02G033440.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119