Cla97C01G016950 (gene) Watermelon (97103) v2

NameCla97C01G016950
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionGlutamine synthetase
LocationCla97Chr01 : 30578628 .. 30579053 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

mRNA sequence

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

Coding sequence (CDS)

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

Protein sequence

MNHRKVLSQGNVPFSWEESPFCFRDFQALALHSSPLPPPHISQFDVVSKIPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKLRRDRIHVSTWK
BLAST of Cla97C01G016950 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_6G495870 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 9.8e-32
Identity = 96/151 (63.58%), Postives = 103/151 (68.21%), Query Frame = 0

Query: 3   HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPP 62
           HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPP 64

Query: 63  PCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF-FG 122
           PCRLPP    NAVSAKEE DDPFL AYKECTKS K      N G    V VVKKSKF FG
Sbjct: 65  PCRLPP-PCNNAVSAKEELDDPFLLAYKECTKSVK------NKGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            FSCK+I SC+I D SFFKL RD IHVSTWK
Sbjct: 125 RFSCKTIHSCDITDNSFFKLPRDTIHVSTWK 148

BLAST of Cla97C01G016950 vs. NCBI nr
Match: EXC12618.1 (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 103.2 bits (256), Expect = 7.3e-19
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS- 60
           M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  ------------KIPPPPC-RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNT 120
                       KIPPPPC   PP   ++A   + ++DPFL AYKECTK  K GK   N 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQEDPFLLAYKECTKPVKKGK--DNE 120

Query: 121 GNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL 131
            NK    V+ KS F  FSCK  +SCE+R+ +F KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

BLAST of Cla97C01G016950 vs. NCBI nr
Match: POO00665.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESPFCFR-----------DFQALALHSSPLPPPHISQFDVVSK 60
           M+HRKV SQG++PFSWE+ P   +             +AL L S      H  Q  +   
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSH--QPTMTIP 60

Query: 61  IPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
           +PP P   PP   ++    K ++DPFL AYKECTK  K GK      NK     VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTK-VKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCKS  +CE++D +F KL
Sbjct: 121 TYFSCKS--TCEVKDENFVKL 136

BLAST of Cla97C01G016950 vs. NCBI nr
Match: XP_021285055.1 (uncharacterized protein LOC110417148 [Herrania umbratica])

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 55/139 (39.57%), Postives = 66/139 (47.48%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESPFCFR---------DFQALALHSSPLPPPHISQFDVVSKIP 60
           MN   V SQGNVPFSWE  P   +         D+    L S P PP          KIP
Sbjct: 1   MNQSIVHSQGNVPFSWENKPGVCKLTSQEGSKEDYFLQKLPSPPYPPESARILIHGVKIP 60

Query: 61  PPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFG 120
           PPPC       T+    ++ DDPFLAAYKECTKS   GK   + G  G      K   F 
Sbjct: 61  PPPCAFQHPFKTSRRGLRKSDDPFLAAYKECTKSTSKGKLAKSDGGSGL-----KKGMFN 120

Query: 121 FSCKSIDSCEIRDASFFKL 131
           FSCK   SC +R+ +  ++
Sbjct: 121 FSCKR--SCSVRNDNLVRI 132

BLAST of Cla97C01G016950 vs. NCBI nr
Match: PON40333.1 (hypothetical protein PanWU01x14_298200 [Parasponia andersonii])

HSP 1 Score: 87.0 bits (214), Expect = 5.4e-14
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESPFCFR---------DFQALALHSSPLPPPHISQFDVVSKIP 60
           M+HRKV SQG++PFSWE+ P   +         ++   AL         +S      KIP
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLIXSNGSKVSSTYNDLKIP 60

Query: 61  PPPCRL--PPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
            PPC +  PP   ++    K ++DPFL AYKECTK  K GK      NK   + VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKTNNGQQNKKG-SKVKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCK+  +CE++D +F KL
Sbjct: 121 TYFSCKT--TCEVKDENFVKL 138

BLAST of Cla97C01G016950 vs. TrEMBL
Match: tr|A0A0A0KGJ1|A0A0A0KGJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-32
Identity = 96/151 (63.58%), Postives = 103/151 (68.21%), Query Frame = 0

Query: 3   HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPP 62
           HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPP 64

Query: 63  PCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF-FG 122
           PCRLPP    NAVSAKEE DDPFL AYKECTKS K      N G    V VVKKSKF FG
Sbjct: 65  PCRLPP-PCNNAVSAKEELDDPFLLAYKECTKSVK------NKGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            FSCK+I SC+I D SFFKL RD IHVSTWK
Sbjct: 125 RFSCKTIHSCDITDNSFFKLPRDTIHVSTWK 148

BLAST of Cla97C01G016950 vs. TrEMBL
Match: tr|W9RVC8|W9RVC8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-19
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS- 60
           M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  ------------KIPPPPC-RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNT 120
                       KIPPPPC   PP   ++A   + ++DPFL AYKECTK  K GK   N 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQEDPFLLAYKECTKPVKKGK--DNE 120

Query: 121 GNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL 131
            NK    V+ KS F  FSCK  +SCE+R+ +F KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

BLAST of Cla97C01G016950 vs. TrEMBL
Match: tr|A0A2N9FZQ1|A0A2N9FZQ1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20630 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQ--ALALHSSPLPPPHISQFDVVS-- 60
           M+HRKV SQG++PFSWE+ P         C  D +  +L L SS    P +S    VS  
Sbjct: 1   MSHRKVHSQGSIPFSWEDKPGICKVTHQECPADIRQHSLKLTSSQSSTPCLSDGAKVSAQ 60

Query: 61  --KIPPPPC--RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVV 120
             KIP PPC   LPPR   +    + ++DPFL AYKECTKS K+        NK  V+ +
Sbjct: 61  DLKIPLPPCPVLLPPRRSISLKGLRWQEDPFLVAYKECTKSVKSDTKPSGASNKAVVSKI 120

Query: 121 KKSKFFGFSCKSIDSCEIRDASFFK------LRRDRIHVS 139
           +K+K   + CK  +SCE+++ +  K      L R++I VS
Sbjct: 121 RKTKSMSW-CK--NSCEVKEDNILKFPRLPPLPREKIGVS 157

BLAST of Cla97C01G016950 vs. TrEMBL
Match: tr|A0A2P5FS81|A0A2P5FS81_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESPFCFR-----------DFQALALHSSPLPPPHISQFDVVSK 60
           M+HRKV SQG++PFSWE+ P   +             +AL L S      H  Q  +   
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSH--QPTMTIP 60

Query: 61  IPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
           +PP P   PP   ++    K ++DPFL AYKECTK  K GK      NK     VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTK-VKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCKS  +CE++D +F KL
Sbjct: 121 TYFSCKS--TCEVKDENFVKL 136

BLAST of Cla97C01G016950 vs. TrEMBL
Match: tr|A0A2P5AUW8|A0A2P5AUW8_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 0

Query: 1   MNHRKVLSQGNVPFSWEESPFCFR---------DFQALALHSSPLPPPHISQFDVVSKIP 60
           M+HRKV SQG++PFSWE+ P   +         ++   AL         +S      KIP
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLIXSNGSKVSSTYNDLKIP 60

Query: 61  PPPCRL--PPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
            PPC +  PP   ++    K ++DPFL AYKECTK  K GK      NK   + VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKTNNGQQNKKG-SKVKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCK+  +CE++D +F KL
Sbjct: 121 TYFSCKT--TCEVKDENFVKL 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48633.19.8e-3263.58hypothetical protein Csa_6G495870 [Cucumis sativus][more]
EXC12618.17.3e-1941.94hypothetical protein L484_012996 [Morus notabilis][more]
POO00665.12.4e-1441.13LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis][more]
XP_021285055.14.2e-1439.57uncharacterized protein LOC110417148 [Herrania umbratica][more]
PON40333.15.4e-1440.43hypothetical protein PanWU01x14_298200 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
tr|A0A0A0KGJ1|A0A0A0KGJ1_CUCSA6.5e-3263.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1[more]
tr|W9RVC8|W9RVC8_9ROSA4.8e-1941.94Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1[more]
tr|A0A2N9FZQ1|A0A2N9FZQ1_FAGSY1.2e-1439.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20630 PE=4 SV=1[more]
tr|A0A2P5FS81|A0A2P5FS81_9ROSA1.6e-1441.13Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 S... [more]
tr|A0A2P5AUW8|A0A2P5AUW8_PARAD3.6e-1440.43Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298200 PE... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G016950.1Cla97C01G016950.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696FAMILY NOT NAMEDcoord: 1..131
NoneNo IPR availablePANTHERPTHR33696:SF2SUBFAMILY NOT NAMEDcoord: 1..131

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G016950Silver-seed gourdcarwmbB0804
Cla97C01G016950Cucumber (Gy14) v2cgybwmbB092
Cla97C01G016950Cucumber (Gy14) v2cgybwmbB253
Cla97C01G016950Cucumber (Gy14) v2cgybwmbB394
Cla97C01G016950Cucumber (Gy14) v1cgywmbB127
Cla97C01G016950Cucumber (Gy14) v1cgywmbB599
Cla97C01G016950Cucumber (Gy14) v1cgywmbB672
Cla97C01G016950Cucurbita maxima (Rimu)cmawmbB014
Cla97C01G016950Cucurbita maxima (Rimu)cmawmbB160
Cla97C01G016950Cucurbita moschata (Rifu)cmowmbB001
Cla97C01G016950Cucurbita maxima (Rimu)cmawmbB802
Cla97C01G016950Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G016950Cucurbita moschata (Rifu)cmowmbB144
Cla97C01G016950Cucurbita moschata (Rifu)cmowmbB423
Cla97C01G016950Cucurbita moschata (Rifu)cmowmbB778
Cla97C01G016950Wild cucumber (PI 183967)cpiwmbB100
Cla97C01G016950Wild cucumber (PI 183967)cpiwmbB272
Cla97C01G016950Cucumber (Chinese Long) v3cucwmbB102
Cla97C01G016950Cucumber (Chinese Long) v3cucwmbB267
Cla97C01G016950Cucumber (Chinese Long) v2cuwmbB098
Cla97C01G016950Cucumber (Chinese Long) v2cuwmbB265
Cla97C01G016950Bottle gourd (USVL1VR-Ls)lsiwmbB260
Cla97C01G016950Bottle gourd (USVL1VR-Ls)lsiwmbB422
Cla97C01G016950Melon (DHL92) v3.6.1medwmbB259
Cla97C01G016950Melon (DHL92) v3.6.1medwmbB452
Cla97C01G016950Melon (DHL92) v3.6.1medwmbB505
Cla97C01G016950Melon (DHL92) v3.5.1mewmbB274
Cla97C01G016950Melon (DHL92) v3.5.1mewmbB458
Cla97C01G016950Melon (DHL92) v3.5.1mewmbB513
Cla97C01G016950Watermelon (Charleston Gray)wcgwmbB314
Cla97C01G016950Watermelon (97103) v1wmwmbB078
Cla97C01G016950Wax gourdwgowmbB285
Cla97C01G016950Watermelon (97103) v2wmbwmbB038
Cla97C01G016950Silver-seed gourdcarwmbB0186
Cla97C01G016950Silver-seed gourdcarwmbB0328
Cla97C01G016950Silver-seed gourdcarwmbB0426
Cla97C01G016950Silver-seed gourdcarwmbB0476