Carg18531 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18531
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein
Location	Cucurbita_argyrosperma_scaffold_109 : 319846 .. 320250 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG

mRNA sequence

ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG

Coding sequence (CDS)

ATGAGCCACAAAAAACTGTATTCTAAAGGAAACGTTCCCTTTTCATGGGAGGAAAAGCCTGGGATTTCCAAGAAAATCTGCTTCCAAGATGTTCAACCTCTGCCCTTACACTCTGTTCATGAAGATTCTGAATTTGATGACGTTGGTAAGATTCCTCCGCCGCCGCCGTGTCGGGTGCAGCCATGCTCTCTTAGAAACGCCTCCACCAAGGGAAGCCGGTGGGAGGAGGACCCTTTTCTTGAGGCGTATAAGGAGTGTACCAAGAGTGTAAAAAAAGGGAAACTTGTGGCGAAGAAGAGTAAGTTGTTTGGGTTTCTTTGTAAGAGCTTTGATTCTTGTGAAATTAGAGATGCGAGTGTGTTCAAGCTTGGTCGAGATAGCATTCGTGTGCTTAGTTGGAAGTAG

Protein sequence

MSHKKLYSKGNVPFSWEEKPGISKKICFQDVQPLPLHSVHEDSEFDDVGKIPPPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKLVAKKSKLFGFLCKSFDSCEIRDASVFKLGRDSIRVLSWK

Homology

[Close]

BLAST of Carg18531 vs. NCBI nr
Match: POO00665.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis])

HSP 1 Score: 104.4 bits (259), Expect = 3.1e-19
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQD------VQPLPLHSVHEDSEFDDVGKIPPP 60
           MSH+K+YS+G++PFSWE+KPGISK     +      V+ L L S            I P 
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSHQPTMTI-PL 60

Query: 61  PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK----------LVAKKSKLFG 120
           PPC +     R++STKG +W+EDPFL AYKECTK +KKGK             KKS    
Sbjct: 61  PPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTKVKKSLFTY 120

Query: 121 FLCKSFDSCEIRDASVFKL 124
           F CKS  +CE++D +  KL
Sbjct: 121 FSCKS--TCEVKDENFVKL 136

[Close]

BLAST of Carg18531 vs. NCBI nr
Match: KJB48760.1 (hypothetical protein B456_008G085600 [Gossypium raimondii] >PPD73482.1 hypothetical protein GOBAR_DD29588 [Gossypium barbadense])

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 63/134 (47.01%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S          K  
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120

[Close]

BLAST of Carg18531 vs. NCBI nr
Match: PPS17926.1 (hypothetical protein GOBAR_AA02659 [Gossypium barbadense])

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 63/134 (47.01%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S          K  
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120

[Close]

BLAST of Carg18531 vs. NCBI nr
Match: EXC12618.1 (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 68/155 (43.87%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGIS---KKICFQDV--QPLPLHSVHED------------- 60
           M+H+K++S+G++PF WE+KPGIS   K+ C +D   Q L L S                 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  -----SEFDDVGKIPPPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK--- 120
                S  +D+ KI PPPPC  QP S R++S KG RW+EDPFL AYKECTK VKKGK   
Sbjct: 61  GSKLVSATNDLLKI-PPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE 120

Query: 121 ------LVAKKSKLFGFLCKSFDSCEIRDASVFKL 124
                  V  KS    F CK  +SCE+R+ +  KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

[Close]

BLAST of Carg18531 vs. NCBI nr
Match: PON40333.1 (hypothetical protein PanWU01x14_298200 [Parasponia andersonii])

HSP 1 Score: 101.7 bits (252), Expect = 2.0e-18
Identity = 59/142 (41.55%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISK---------KICFQDVQPLPLHSVHEDSEFDDVGKI 60
           MSH+K+YS+G++PFSWE+KPGISK         +   + +  +  +     S ++D+ KI
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLIXSNGSKVSSTYNDL-KI 60

Query: 61  PPPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGKL----------VAKKSK 120
            P PPC +     R++STKG +W+EDPFL AYKECTK +KKGK             KKS 
Sbjct: 61  -PLPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKTNNGQQNKKGSKVKKSL 120

Query: 121 LFGFLCKSFDSCEIRDASVFKL 124
              F CK+  +CE++D +  KL
Sbjct: 121 FTYFSCKT--TCEVKDENFVKL 138

[Close]

BLAST of Carg18531 vs. TrEMBL
Match: tr|A0A2P5FS81|A0A2P5FS81_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 61/139 (43.88%), Postives = 79/139 (56.83%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISKKICFQD------VQPLPLHSVHEDSEFDDVGKIPPP 60
           MSH+K+YS+G++PFSWE+KPGISK     +      V+ L L S            I P 
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSHQPTMTI-PL 60

Query: 61  PPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK----------LVAKKSKLFG 120
           PPC +     R++STKG +W+EDPFL AYKECTK +KKGK             KKS    
Sbjct: 61  PPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTKVKKSLFTY 120

Query: 121 FLCKSFDSCEIRDASVFKL 124
           F CKS  +CE++D +  KL
Sbjct: 121 FSCKS--TCEVKDENFVKL 136

[Close]

BLAST of Carg18531 vs. TrEMBL
Match: tr|A0A0D2TZK9|A0A0D2TZK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G085600 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 63/134 (47.01%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S          K  
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120

[Close]

BLAST of Carg18531 vs. TrEMBL
Match: tr|A0A2P5QG56|A0A2P5QG56_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29588 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 63/134 (47.01%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S          K  
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120

[Close]

BLAST of Carg18531 vs. TrEMBL
Match: tr|A0A2P5YQP0|A0A2P5YQP0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA02659 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 63/134 (47.01%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGISK--KICFQDVQPLPLHS----VHEDSEFDDVGKIPPP 60
           MSH K++S GN+PFSWEEKPG+SK  K+   D Q  P+ S    VH+        K+PPP
Sbjct: 1   MSHTKVHSLGNIPFSWEEKPGVSKSSKLTHYDHQHCPIDSSKNLVHDK-------KVPPP 60

Query: 61  PPCRVQPCSLRNASTKGSR-WEEDPFLEAYKECTKSVKKGKLVAKKS----------KLF 118
           PP   QP   R+AS KG R W +DPFL AYKECTKS    KL +  S          K  
Sbjct: 61  PPFSKQPLPKRSASVKGWRWWPQDPFLAAYKECTKSGGNAKLTSDASRNGGSKLLRKKKI 120

[Close]

BLAST of Carg18531 vs. TrEMBL
Match: tr|W9RVC8|W9RVC8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.8e-19
Identity = 68/155 (43.87%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 1   MSHKKLYSKGNVPFSWEEKPGIS---KKICFQDV--QPLPLHSVHED------------- 60
           M+H+K++S+G++PF WE+KPGIS   K+ C +D   Q L L S                 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  -----SEFDDVGKIPPPPPCRVQPCSLRNASTKGSRWEEDPFLEAYKECTKSVKKGK--- 120
                S  +D+ KI PPPPC  QP S R++S KG RW+EDPFL AYKECTK VKKGK   
Sbjct: 61  GSKLVSATNDLLKI-PPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE 120

Query: 121 ------LVAKKSKLFGFLCKSFDSCEIRDASVFKL 124
                  V  KS    F CK  +SCE+R+ +  KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

The following BLAST results are available for this feature:

BLAST of Carg18531 vs. NCBI nr


Match Name	E-value	Identity	Description
POO00665.1	3.1e-19	43.88	LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis]	[more]
KJB48760.1	6.9e-19	47.01	hypothetical protein B456_008G085600 [Gossypium raimondii] >PPD73482.1 hypotheti...	[more]
PPS17926.1	6.9e-19	47.01	hypothetical protein GOBAR_AA02659 [Gossypium barbadense]	[more]
EXC12618.1	1.2e-18	43.87	hypothetical protein L484_012996 [Morus notabilis]	[more]
PON40333.1	2.0e-18	41.55	hypothetical protein PanWU01x14_298200 [Parasponia andersonii]	[more]

BLAST of Carg18531 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg18531 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18531 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5FS81\|A0A2P5FS81_9ROSA	2.1e-19	43.88	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 S...	[more]
tr\|A0A0D2TZK9\|A0A0D2TZK9_GOSRA	4.6e-19	47.01	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G085600 PE=4 ...	[more]
tr\|A0A2P5QG56\|A0A2P5QG56_GOSBA	4.6e-19	47.01	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD29588 PE=4 SV...	[more]
tr\|A0A2P5YQP0\|A0A2P5YQP0_GOSBA	4.6e-19	47.01	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA02659 PE=4 SV...	[more]
tr\|W9RVC8\|W9RVC8_9ROSA	7.8e-19	43.87	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18531-RA	Carg18531-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 1..105
None	No IPR available	PANTHER	PTHR33696:SF2	SUBFAMILY NOT NAMED	coord: 1..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18531	Cla014049	Watermelon (97103) v1	carwmB0005
Carg18531	Csa6G495870	Cucumber (Chinese Long) v2	carcuB0003
Carg18531	ClCG01G017790	Watermelon (Charleston Gray)	carwcgB0002
Carg18531	CSPI06G29120	Wild cucumber (PI 183967)	carcpiB0003
Carg18531	CmaCh03G008950	Cucurbita maxima (Rimu)	carcmaB0003
Carg18531	CmoCh07G006400	Cucurbita moschata (Rifu)	carcmoB0005
Carg18531	CmoCh03G009380	Cucurbita moschata (Rifu)	carcmoB0004
Carg18531	Lsi01G008720	Bottle gourd (USVL1VR-Ls)	carlsiB001
Carg18531	Cp4.1LG19g10510	Cucurbita pepo (Zucchini)	carcpeB0002
Carg18531	CsaV3_6G044310	Cucumber (Chinese Long) v3	carcucB0003
Carg18531	Cla97C01G016950	Watermelon (97103) v2	carwmbB0002
Carg18531	Bhi03G000815	Wax gourd	carwgoB0003

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18531	Silver-seed gourd	carcarB000
Carg18531	Silver-seed gourd	carcarB001
Carg18531	Silver-seed gourd	carcarB002
Carg18531	Silver-seed gourd	carcarB003
Carg18531	Cucumber (Gy14) v2	carcgybB0001
Carg18531	Cucumber (Gy14) v2	carcgybB0002
Carg18531	Cucumber (Gy14) v2	carcgybB0003
Carg18531	Cucumber (Gy14) v1	carcgyB0001
Carg18531	Cucumber (Gy14) v1	carcgyB0002
Carg18531	Cucumber (Gy14) v1	carcgyB0003
Carg18531	Cucurbita maxima (Rimu)	carcmaB0001
Carg18531	Cucurbita maxima (Rimu)	carcmaB0002
Carg18531	Cucurbita maxima (Rimu)	carcmaB0004
Carg18531	Cucurbita moschata (Rifu)	carcmoB0001
Carg18531	Cucurbita moschata (Rifu)	carcmoB0002
Carg18531	Cucurbita moschata (Rifu)	carcmoB0003
Carg18531	Cucurbita pepo (Zucchini)	carcpeB0001
Carg18531	Cucurbita pepo (Zucchini)	carcpeB0003
Carg18531	Cucurbita pepo (Zucchini)	carcpeB0004
Carg18531	Wild cucumber (PI 183967)	carcpiB0001
Carg18531	Wild cucumber (PI 183967)	carcpiB0002
Carg18531	Cucumber (Chinese Long) v2	carcuB0001
Carg18531	Cucumber (Chinese Long) v2	carcuB0002
Carg18531	Cucumber (Chinese Long) v3	carcucB0001
Carg18531	Cucumber (Chinese Long) v3	carcucB0002
Carg18531	Bottle gourd (USVL1VR-Ls)	carlsiB002
Carg18531	Bottle gourd (USVL1VR-Ls)	carlsiB003
Carg18531	Melon (DHL92) v3.5.1	carmeB0001
Carg18531	Melon (DHL92) v3.5.1	carmeB0002
Carg18531	Melon (DHL92) v3.6.1	carmedB0001
Carg18531	Melon (DHL92) v3.6.1	carmedB0002
Carg18531	Melon (DHL92) v3.6.1	carmedB0003
Carg18531	Watermelon (Charleston Gray)	carwcgB0003
Carg18531	Watermelon (97103) v1	carwmB0004
Carg18531	Watermelon (97103) v2	carwmbB0003
Carg18531	Wax gourd	carwgoB0001