CmaCh03G008950 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G008950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_6
LocationCma_Chr03 : 6561782 .. 6562183 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCACAGAAAACTCCTTTCCCAACGAAATCCTCCCTTCTCGTGGGAGCAAAACCCCGGCCGTTCCAAATTCTGCTTCAGGGATTTCCAGGCCCTTGCCTTACAGTCCCCGCCGTCGTCCACCTACCACAGAGAAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCTGCAGCCCCGTTCGATTAGAAACGCCTCCACCAAGGAAGACGACCCTTTTCTGGTGGCCTACAAGGAGTGCACTAAAAGTGTCAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCTGCCGCCGTTTCGAAGAAGAGCAAGTTGTTTGGTTTTTCTTGCAAGACCATTCATTCCTGTGAAATTGGATCAAAATTTCCTTCAACCTCGTAG

mRNA sequence

ATGAATCACAGAAAACTCCTTTCCCAACGAAATCCTCCCTTCTCGTGGGAGCAAAACCCCGGCCGTTCCAAATTCTGCTTCAGGGATTTCCAGGCCCTTGCCTTACAGTCCCCGCCGTCGTCCACCTACCACAGAGAAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCTGCAGCCCCGTTCGATTAGAAACGCCTCCACCAAGGAAGACGACCCTTTTCTGGTGGCCTACAAGGAGTGCACTAAAAGTGTCAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCTGCCGCCGTTTCGAAGAAGAGCAAGTTGTTTGGTTTTTCTTGCAAGACCATTCATTCCTGTGAAATTGGATCAAAATTTCCTTCAACCTCGTAG

Coding sequence (CDS)

ATGAATCACAGAAAACTCCTTTCCCAACGAAATCCTCCCTTCTCGTGGGAGCAAAACCCCGGCCGTTCCAAATTCTGCTTCAGGGATTTCCAGGCCCTTGCCTTACAGTCCCCGCCGTCGTCCACCTACCACAGAGAAGACTCTGAATTCGACGTCGTTTCTAAGATTCCTCCGCCGCCGTACCGGCTGCAGCCCCGTTCGATTAGAAACGCCTCCACCAAGGAAGACGACCCTTTTCTGGTGGCCTACAAGGAGTGCACTAAAAGTGTCAAAAATGGAAGCTTTGTGGAGAGAGGAAACAAAGGAGCTGCCGCCGTTTCGAAGAAGAGCAAGTTGTTTGGTTTTTCTTGCAAGACCATTCATTCCTGTGAAATTGGATCAAAATTTCCTTCAACCTCGTAG

Protein sequence

MNHRKLLSQRNPPFSWEQNPGRSKFCFRDFQALALQSPPSSTYHREDSEFDVVSKIPPPPYRLQPRSIRNASTKEDDPFLVAYKECTKSVKNGSFVERGNKGAAAVSKKSKLFGFSCKTIHSCEIGSKFPSTS
Homology
[Close]
BLAST of CmaCh03G008950 vs. TrEMBL
Match: A0A0A0KGJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.5e-21
Identity = 79/132 (59.85%), Postives = 83/132 (62.88%), Query Frame = 1 

Query: 3   HRKLLSQRNPPFSWEQNP-GRSKFCFRDFQALALQSPPSSTYHRED--SEFD--VVSKIP 62
           HRKLLSQ N      QNP G SKF  RDFQALAL    SS Y   D  S+FD  V SKIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKF--RDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64

Query: 63  PPPYRLQPRSIRNASTKE--DDPFLVAYKECTKSVKNGSFVERGNKGAAAVSKKSK-LFG 122
           PPP RL P      S KE  DDPFL+AYKECTKSVKN     +G      V KKSK LFG
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKTIHSCEI 126
            FSCKTIHSC+I
Sbjct: 125 RFSCKTIHSCDI 129

[Close]
BLAST of CmaCh03G008950 vs. TrEMBL
Match: W9RVC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 62/147 (42.18%), Postives = 79/147 (53.74%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKF----CFRDFQALALQ------SPPSSTYH------ 60
           M HRK+ SQ + PF WE  PG SK     C +D+++ AL       SPPS          
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  --REDSEFDVVSKIPPPPYRLQPRSIRNASTK----EDDPFLVAYKECTKSVKNGSFVER 120
             +  S  + + KIPPPP   QP S R++S K    ++DPFL+AYKECTK VK G   E 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE- 120

Query: 121 GNKGAAAVSKKSKLFGFSCKTIHSCEI 126
            NK  + V  KS    FSCK  +SCE+
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEV 143

[Close]
BLAST of CmaCh03G008950 vs. TrEMBL
Match: F6I2E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0541g00010 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-12
Identity = 56/140 (40.00%), Postives = 73/140 (52.14%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKFCFRDFQA----------LALQSPPSSTYHREDSEF 60
           M+HRK+ SQ + PFSWE +PG SK   ++  A          L    PPS        + 
Sbjct: 1   MSHRKVRSQGSVPFSWEDSPGVSKAAHQECPANIGIYALNLPLPPSPPPSLPPSNSPPQV 60

Query: 61  DVVS-KIPPPPYRLQPRSIRNAST----KEDDPFLVAYKECTKSVKNGSFVERGNKGAAA 120
            + + KIP PP   QP   R +S     +E+DPFL AYKECTKSV++    +   KG   
Sbjct: 61  SIQNVKIPLPPCPDQPPLRRTSSKGLWGQEEDPFLAAYKECTKSVESAKKPKESKKGFGF 120

Query: 121 VSKKSKLFGFSCKTIHSCEI 126
             +K K F FSCK  HSCE+
Sbjct: 121 GRRKCK-FTFSCK--HSCEV 137

[Close]
BLAST of CmaCh03G008950 vs. TrEMBL
Match: A0A061DHT6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000836 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-12
Identity = 52/136 (38.24%), Postives = 67/136 (49.26%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKFCFRDFQA------LALQSPPSSTYHREDSEFDVVS 60
           M+ +K+ SQ N PFSWE  PG SK    D Q        AL   PS +            
Sbjct: 1   MSRKKVHSQGNIPFSWEDKPGVSKVTHYDDQCPIVIGLCALNQTPSPSDAGGSKILVHDK 60

Query: 61  KIPPPPYRLQPRSIRNASTK-----EDDPFLVAYKECTKSVKNGSFVERGNKGAAAVSKK 120
           K+PPPP  +Q    R+ S K     ++DPFL AYKECTK   NG +   G K   +  +K
Sbjct: 61  KVPPPPCTMQLVPKRSTSVKGLRWWQEDPFLAAYKECTKGGGNGKWSSEGRKTDGSNVRK 120

Query: 121 SKLFGFSCKTIHSCEI 126
            K   FSCK  +SC++
Sbjct: 121 KKTITFSCK--NSCDV 134

[Close]
BLAST of CmaCh03G008950 vs. TrEMBL
Match: B9HFY7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14730g PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKFCFRDF------QALALQSPPSSTYHREDSE--FDV 60
           M+HRK+ SQ + PFSWE +PG SK   +++       A+ + SP S      DS+  + V
Sbjct: 1   MSHRKVYSQGSIPFSWEDSPGVSKVIHKEYTIDIGLNAVNISSPTSPILFPRDSDTSYKV 60

Query: 61  VS----KIPPPPY---RLQP----RSIRNASTKEDDPFLVAYKECTKSVKNGSFVERGNK 120
           +     KIP PP    +++P    +S++     ++DPFL AYKECTK+ +NG       K
Sbjct: 61  LGSHGIKIPLPPCVSAKIEPPRRSKSVKGFRWWQEDPFLAAYKECTKNGRNGKLSSESKK 120

Query: 121 GAAAVSKKSKLFGFSCKTIHSCEI 126
              +  +KS+L  FSCK   SC++
Sbjct: 121 NVRSKLRKSRLI-FSCK--DSCDV 141

[Close]
BLAST of CmaCh03G008950 vs. NCBI nr
Match: gi|700193429|gb|KGN48633.1| (hypothetical protein Csa_6G495870 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 79/132 (59.85%), Postives = 83/132 (62.88%), Query Frame = 1 

Query: 3   HRKLLSQRNPPFSWEQNP-GRSKFCFRDFQALALQSPPSSTYHRED--SEFD--VVSKIP 62
           HRKLLSQ N      QNP G SKF  RDFQALAL    SS Y   D  S+FD  V SKIP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKF--RDFQALALHLHSSSIYKNPDGASQFDHLVSSKIP 64

Query: 63  PPPYRLQPRSIRNASTKE--DDPFLVAYKECTKSVKNGSFVERGNKGAAAVSKKSK-LFG 122
           PPP RL P      S KE  DDPFL+AYKECTKSVKN     +G      V KKSK LFG
Sbjct: 65  PPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKN-----KGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKTIHSCEI 126
            FSCKTIHSC+I
Sbjct: 125 RFSCKTIHSCDI 129

[Close]
BLAST of CmaCh03G008950 vs. NCBI nr
Match: gi|703139119|ref|XP_010106902.1| (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 82.8 bits (203), Expect = 5.0e-13
Identity = 62/147 (42.18%), Postives = 79/147 (53.74%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKF----CFRDFQALALQ------SPPSSTYH------ 60
           M HRK+ SQ + PF WE  PG SK     C +D+++ AL       SPPS          
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  --REDSEFDVVSKIPPPPYRLQPRSIRNASTK----EDDPFLVAYKECTKSVKNGSFVER 120
             +  S  + + KIPPPP   QP S R++S K    ++DPFL+AYKECTK VK G   E 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPS-RSSSAKGLRWQEDPFLLAYKECTKPVKKGKDNE- 120

Query: 121 GNKGAAAVSKKSKLFGFSCKTIHSCEI 126
            NK  + V  KS    FSCK  +SCE+
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEV 143

[Close]
BLAST of CmaCh03G008950 vs. NCBI nr
Match: gi|590705986|ref|XP_007047595.1| (Uncharacterized protein TCM_000836 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-12
Identity = 52/136 (38.24%), Postives = 67/136 (49.26%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKFCFRDFQA------LALQSPPSSTYHREDSEFDVVS 60
           M+ +K+ SQ N PFSWE  PG SK    D Q        AL   PS +            
Sbjct: 1   MSRKKVHSQGNIPFSWEDKPGVSKVTHYDDQCPIVIGLCALNQTPSPSDAGGSKILVHDK 60

Query: 61  KIPPPPYRLQPRSIRNASTK-----EDDPFLVAYKECTKSVKNGSFVERGNKGAAAVSKK 120
           K+PPPP  +Q    R+ S K     ++DPFL AYKECTK   NG +   G K   +  +K
Sbjct: 61  KVPPPPCTMQLVPKRSTSVKGLRWWQEDPFLAAYKECTKGGGNGKWSSEGRKTDGSNVRK 120

Query: 121 SKLFGFSCKTIHSCEI 126
            K   FSCK  +SC++
Sbjct: 121 KKTITFSCK--NSCDV 134

[Close]
BLAST of CmaCh03G008950 vs. NCBI nr
Match: gi|1000986272|ref|XP_015574398.1| (PREDICTED: uncharacterized protein LOC8265256 [Ricinus communis])

HSP 1 Score: 78.6 bits (192), Expect = 9.4e-12
Identity = 52/135 (38.52%), Postives = 68/135 (50.37%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKFCFRDFQ-------ALALQSPPSSTYHREDSEFDVV 60
           M+  K  ++ N PFSWE+ PG SK   +D          L L  PP        S  D +
Sbjct: 1   MDQSKANTKGNVPFSWEKKPGVSKLINQDSDPNQEEDLVLKLLPPPCPIESPRISTHDTI 60

Query: 61  SKIPPPPYRLQP---RSIRNASTKEDDPFLVAYKECTKSVKNGSFVERGNKGAAAVSKKS 120
           + IP PP   QP    S R    K+DDPFL AYKECTKS + G  + R N   + + +K 
Sbjct: 61  N-IPLPPCTFQPPSRSSSRKGIRKQDDPFLAAYKECTKSTEKGDKLSRNNAARSGL-RKG 120

Query: 121 KLFGFSCKTIHSCEI 126
            +F FSCK  +SC +
Sbjct: 121 YIFNFSCK--NSCSV 131

[Close]
BLAST of CmaCh03G008950 vs. NCBI nr
Match: gi|224097228|ref|XP_002310885.1| (hypothetical protein POPTR_0007s14730g [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 1 

Query: 1   MNHRKLLSQRNPPFSWEQNPGRSKFCFRDF------QALALQSPPSSTYHREDSE--FDV 60
           M+HRK+ SQ + PFSWE +PG SK   +++       A+ + SP S      DS+  + V
Sbjct: 1   MSHRKVYSQGSIPFSWEDSPGVSKVIHKEYTIDIGLNAVNISSPTSPILFPRDSDTSYKV 60

Query: 61  VS----KIPPPPY---RLQP----RSIRNASTKEDDPFLVAYKECTKSVKNGSFVERGNK 120
           +     KIP PP    +++P    +S++     ++DPFL AYKECTK+ +NG       K
Sbjct: 61  LGSHGIKIPLPPCVSAKIEPPRRSKSVKGFRWWQEDPFLAAYKECTKNGRNGKLSSESKK 120

Query: 121 GAAAVSKKSKLFGFSCKTIHSCEI 126
              +  +KS+L  FSCK   SC++
Sbjct: 121 NVRSKLRKSRLI-FSCK--DSCDV 141

The following BLAST results are available for this feature:
BLAST of CmaCh03G008950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G008950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGJ1_CUCSA4.5e-2159.85Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495870 PE=4 SV=1[more]
W9RVC8_9ROSA3.5e-1342.18Uncharacterized protein OS=Morus notabilis GN=L484_012996 PE=4 SV=1[more]
F6I2E0_VITVI2.9e-1240.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0541g00010 PE=4 SV=... [more]
A0A061DHT6_THECC5.0e-1238.24Uncharacterized protein OS=Theobroma cacao GN=TCM_000836 PE=4 SV=1[more]
B9HFY7_POPTR1.1e-1136.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14730g PE=4 SV=1[more]
BLAST of CmaCh03G008950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh03G008950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193429|gb|KGN48633.1|6.5e-2159.85hypothetical protein Csa_6G495870 [Cucumis sativus][more]
gi|703139119|ref|XP_010106902.1|5.0e-1342.18hypothetical protein L484_012996 [Morus notabilis][more]
gi|590705986|ref|XP_007047595.1|7.2e-1238.24Uncharacterized protein TCM_000836 [Theobroma cacao][more]
gi|1000986272|ref|XP_015574398.1|9.4e-1238.52PREDICTED: uncharacterized protein LOC8265256 [Ricinus communis][more]
gi|224097228|ref|XP_002310885.1|1.6e-1136.11hypothetical protein POPTR_0007s14730g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G008950.1CmaCh03G008950.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696FAMILY NOT NAMEDcoord: 1..123
score: 2.9
NoneNo IPR availablePANTHERPTHR33696:SF2SUBFAMILY NOT NAMEDcoord: 1..123
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G008950Cla014049Watermelon (97103) v1cmawmB632
CmaCh03G008950Csa6G495870Cucumber (Chinese Long) v2cmacuB681
CmaCh03G008950ClCG01G017790Watermelon (Charleston Gray)cmawcgB579
CmaCh03G008950CSPI06G29120Wild cucumber (PI 183967)cmacpiB689
CmaCh03G008950CmoCh07G006400Cucurbita moschata (Rifu)cmacmoB667
CmaCh03G008950CmoCh03G009380Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G008950Lsi01G008720Bottle gourd (USVL1VR-Ls)cmalsiB597
CmaCh03G008950Cp4.1LG19g10510Cucurbita pepo (Zucchini)cmacpeB671
CmaCh03G008950CsaV3_6G044310Cucumber (Chinese Long) v3cmacucB0809
CmaCh03G008950Cla97C01G016950Watermelon (97103) v2cmawmbB670
CmaCh03G008950Bhi03G000815Wax gourdcmawgoB0798
CmaCh03G008950Carg18531Silver-seed gourdcarcmaB0003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G008950Cucurbita moschata (Rifu)cmacmoB632
CmaCh03G008950Cucurbita moschata (Rifu)cmacmoB634
CmaCh03G008950Wild cucumber (PI 183967)cmacpiB658
CmaCh03G008950Wild cucumber (PI 183967)cmacpiB680
CmaCh03G008950Cucumber (Chinese Long) v2cmacuB651
CmaCh03G008950Cucumber (Chinese Long) v2cmacuB671
CmaCh03G008950Melon (DHL92) v3.5.1cmameB596
CmaCh03G008950Melon (DHL92) v3.5.1cmameB617
CmaCh03G008950Watermelon (Charleston Gray)cmawcgB603
CmaCh03G008950Watermelon (97103) v1cmawmB619
CmaCh03G008950Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G008950Bottle gourd (USVL1VR-Ls)cmalsiB613
CmaCh03G008950Bottle gourd (USVL1VR-Ls)cmalsiB621
CmaCh03G008950Cucumber (Gy14) v2cgybcmaB241
CmaCh03G008950Cucumber (Gy14) v2cgybcmaB536
CmaCh03G008950Cucumber (Gy14) v2cgybcmaB831
CmaCh03G008950Melon (DHL92) v3.6.1cmamedB680
CmaCh03G008950Melon (DHL92) v3.6.1cmamedB691
CmaCh03G008950Melon (DHL92) v3.6.1cmamedB703
CmaCh03G008950Silver-seed gourdcarcmaB0567
CmaCh03G008950Silver-seed gourdcarcmaB0633
CmaCh03G008950Silver-seed gourdcarcmaB1070
CmaCh03G008950Cucumber (Chinese Long) v3cmacucB0778
CmaCh03G008950Cucumber (Chinese Long) v3cmacucB0800
CmaCh03G008950Watermelon (97103) v2cmawmbB701
CmaCh03G008950Wax gourdcmawgoB0781
CmaCh03G008950Cucurbita maxima (Rimu)cmacmaB063
CmaCh03G008950Cucurbita maxima (Rimu)cmacmaB186
CmaCh03G008950Cucurbita maxima (Rimu)cmacmaB421
CmaCh03G008950Cucurbita maxima (Rimu)cmacmaB523
CmaCh03G008950Cucumber (Gy14) v1cgycmaB0231
CmaCh03G008950Cucumber (Gy14) v1cgycmaB0966
CmaCh03G008950Cucumber (Gy14) v1cgycmaB1092