Csa6G495870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G495870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 24150867 .. 24151419 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTCTTCCTGCTCTCCCTTTTTAATCCCACTGTATGAGCCTTCCCCTTTTTCACAATTATCATTTTGATCTTATCATCATCCAATTATTGTTGTTATTATTAATATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGGTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCCTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAA

mRNA sequence

ATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGGTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCCTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAA

Coding sequence (CDS)

ATGAGTACTCGTCATAGAAAACTCCTTTCCCAAGGAAATATTATTCCCCATCATAATCAAAATCCCCCAGGGGTTTCCAAATTCCGGGATTTTCAAGCCCTTGCCTTACACTTACACTCCTCTTCTATTTACAAAAACCCAGATGGCGCTTCTCAGTTCGACCACCTAGTTTCTTCTAAGATTCCTCCACCGCCCTGCCGCCTTCCGCCTCCCTGCAATAATGCTGTCTCTGCCAAGGAGGAGCTGGACGATCCTTTTCTCCTGGCATATAAGGAGTGTACTAAAAGTGTTAAAAATAAAGGAATTAATAACGACGTTGGTGTTGTGAAGAAGAGTAAGTTTTTGTTTGGACGTTTTTCTTGTAAGACTATTCATTCTTGTGATATTACTGATAATAGTTTCTTCAAGCTTCCTAGAGATACAATTCATGTCTCCACTTGGAAATAA

Protein sequence

MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFSCKTIHSCDITDNSFFKLPRDTIHVSTWK*
Homology
[Close]
BLAST of Csa6G495870 vs. TrEMBL
Match: A0A0A0KGJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 7.9e-83
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 1   MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60
           MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK
Sbjct: 1   MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60

Query: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120
           IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS
Sbjct: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120

Query: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 149
           CKTIHSCDITDNSFFKLPRDTIHVSTWK
Sbjct: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]
BLAST of Csa6G495870 vs. TrEMBL
Match: W9RVC8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.3e-13
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 1 

Query: 5   HRKLLSQGNIIPHHNQNPPGVSKF------RDFQALALHLHSSSIYKNPDGASQFD---- 64
           HRK+ SQG+I P   ++ PG+SK       +D+++ AL L SS     P  A QF     
Sbjct: 3   HRKVHSQGSI-PFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKS-SPPSKAQQFSLLSD 62

Query: 65  --HLVSS-----KIPPPPCRLPPPCNNAVSAK--EELDDPFLLAYKECTKSVKNKGINND 124
              LVS+     KIPPPPC   PP  ++ SAK     +DPFLLAYKECTK VK    N D
Sbjct: 63  GSKLVSATNDLLKIPPPPCLSQPPSRSS-SAKGLRWQEDPFLLAYKECTKPVKKGKDNED 122

Query: 125 ----VGVVKKSKFLFGRFSCKTIHSCDITDNSFFKL 138
                 V+ KS F++  FSCK  +SC++ +++F KL
Sbjct: 123 NKKRSKVIMKSMFMY--FSCK--NSCEVREDNFIKL 151

[Close]
BLAST of Csa6G495870 vs. TrEMBL
Match: A0A059B0E0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02331 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.6e-09
Identity = 57/158 (36.08%), Postives = 75/158 (47.47%), Query Frame = 1 

Query: 5   HRKLLSQGNI-IPHHNQNPPGVSKFRDFQALALHLHSSSIYKNP-------DGASQFDHL 64
           HRK+ SQG+I IP   ++ PG+SK        L   SSS+  +P        G+      
Sbjct: 4   HRKVRSQGSIVIPFSWEHSPGISKAAHQN---LERRSSSLAPSPPPTSPPSSGSQGLAQA 63

Query: 65  VSSKIPPPP-------CRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVV 124
              KIPPPP        R+P    +        DDPFL AYKECTKSV +    +D G  
Sbjct: 64  RKDKIPPPPGMAAAAVARVPRRSASLKGFLWREDDPFLTAYKECTKSVDSDESGSDEG-- 123

Query: 125 KKSKFLFGR--------FSCKTIHSCDITDNSFFKLPR 140
           KKS  +  R        FSCK+  SCD+ +NS  ++ R
Sbjct: 124 KKSNPVKSRWRNKRMSVFSCKS--SCDVRENSLVRMSR 154

[Close]
BLAST of Csa6G495870 vs. TrEMBL
Match: V4UJ40_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026641mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 60/158 (37.97%), Postives = 80/158 (50.63%), Query Frame = 1 

Query: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALH--LHSSSIYKNPDGASQFDHLVSS--- 64
           HRK+ SQG+I P   ++ PGVSK    Q  +L+  LH+ ++ ++P    Q     SS   
Sbjct: 3   HRKIQSQGSI-PFSWEDKPGVSKITTPQECSLNQGLHALNL-ESPSPPPQPPRTASSNPN 62

Query: 65  ----------KIPPPPCRLPPPCNNAVSAKEEL----DDPFLLAYKECTKSVKN----KG 124
                     KIP PPC    P     SAK  +    +DPFL AY ECTKS ++    K 
Sbjct: 63  SLSLSAEEILKIPLPPCPSQQPPRRTTSAKGVIGWWQEDPFLAAYMECTKSSRSRQRKKS 122

Query: 125 INNDVG--VVKKSKFLFGRFSCKTIHSCDITDNSFFKL 138
             + VG    KKSKFL   FSCK   SC+  D++F +L
Sbjct: 123 NPSSVGSKPKKKSKFL---FSCK--GSCETHDDNFVRL 153

[Close]
BLAST of Csa6G495870 vs. TrEMBL
Match: M5W0G0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012448mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 62/166 (37.35%), Postives = 81/166 (48.80%), Query Frame = 1 

Query: 5   HRKLLSQGNIIPHHNQNPPGVSKFR------DFQALALHLHSSSIYKNPDGASQFDHLVS 64
           HRK+ SQG++ P   +  PGVSK        DF   AL+  S+    + D  ++  +   
Sbjct: 3   HRKVHSQGSV-PFSWEAMPGVSKVTNQDCPTDFGVGALNCLSAE-EDSGDSPNKLVNNPE 62

Query: 65  SKIPPPPCRLPPPCNNAVSAK----EELDDPFLLAYKECTKSV--------KNKGINND- 124
            KIP PPC L    + + S K        DPFLLAYKECTKS         K  GI N+ 
Sbjct: 63  IKIPLPPCPLLKAPSRSSSTKGFRWHVEADPFLLAYKECTKSTSTLNNNSGKLPGIENNK 122

Query: 125 --VGVV--KKSKFLFGRFSCKTIHSCDITDNSFFK------LPRDT 142
              G +  K  K  F  FSCK  +SCD+ +++F K      LPRDT
Sbjct: 123 KGFGAIGCKVRKSRFNMFSCK--NSCDVREDNFVKLSQLPALPRDT 164

[Close]
BLAST of Csa6G495870 vs. NCBI nr
Match: gi|700193429|gb|KGN48633.1| (hypothetical protein Csa_6G495870 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-82
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1 

Query: 1   MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60
           MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK
Sbjct: 1   MSTRHRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSK 60

Query: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120
           IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS
Sbjct: 61  IPPPPCRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVVKKSKFLFGRFS 120

Query: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 149
           CKTIHSCDITDNSFFKLPRDTIHVSTWK
Sbjct: 121 CKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]
BLAST of Csa6G495870 vs. NCBI nr
Match: gi|703139119|ref|XP_010106902.1| (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 66/156 (42.31%), Postives = 88/156 (56.41%), Query Frame = 1 

Query: 5   HRKLLSQGNIIPHHNQNPPGVSKF------RDFQALALHLHSSSIYKNPDGASQFD---- 64
           HRK+ SQG+I P   ++ PG+SK       +D+++ AL L SS     P  A QF     
Sbjct: 3   HRKVHSQGSI-PFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKS-SPPSKAQQFSLLSD 62

Query: 65  --HLVSS-----KIPPPPCRLPPPCNNAVSAK--EELDDPFLLAYKECTKSVKNKGINND 124
              LVS+     KIPPPPC   PP  ++ SAK     +DPFLLAYKECTK VK    N D
Sbjct: 63  GSKLVSATNDLLKIPPPPCLSQPPSRSS-SAKGLRWQEDPFLLAYKECTKPVKKGKDNED 122

Query: 125 ----VGVVKKSKFLFGRFSCKTIHSCDITDNSFFKL 138
                 V+ KS F++  FSCK  +SC++ +++F KL
Sbjct: 123 NKKRSKVIMKSMFMY--FSCK--NSCEVREDNFIKL 151

[Close]
BLAST of Csa6G495870 vs. NCBI nr
Match: gi|629093588|gb|KCW59583.1| (hypothetical protein EUGRSUZ_H02331 [Eucalyptus grandis])

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 57/158 (36.08%), Postives = 75/158 (47.47%), Query Frame = 1 

Query: 5   HRKLLSQGNI-IPHHNQNPPGVSKFRDFQALALHLHSSSIYKNP-------DGASQFDHL 64
           HRK+ SQG+I IP   ++ PG+SK        L   SSS+  +P        G+      
Sbjct: 4   HRKVRSQGSIVIPFSWEHSPGISKAAHQN---LERRSSSLAPSPPPTSPPSSGSQGLAQA 63

Query: 65  VSSKIPPPP-------CRLPPPCNNAVSAKEELDDPFLLAYKECTKSVKNKGINNDVGVV 124
              KIPPPP        R+P    +        DDPFL AYKECTKSV +    +D G  
Sbjct: 64  RKDKIPPPPGMAAAAVARVPRRSASLKGFLWREDDPFLTAYKECTKSVDSDESGSDEG-- 123

Query: 125 KKSKFLFGR--------FSCKTIHSCDITDNSFFKLPR 140
           KKS  +  R        FSCK+  SCD+ +NS  ++ R
Sbjct: 124 KKSNPVKSRWRNKRMSVFSCKS--SCDVRENSLVRMSR 154

[Close]
BLAST of Csa6G495870 vs. NCBI nr
Match: gi|567867023|ref|XP_006426134.1| (hypothetical protein CICLE_v10026641mg [Citrus clementina])

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-08
Identity = 60/158 (37.97%), Postives = 80/158 (50.63%), Query Frame = 1 

Query: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALH--LHSSSIYKNPDGASQFDHLVSS--- 64
           HRK+ SQG+I P   ++ PGVSK    Q  +L+  LH+ ++ ++P    Q     SS   
Sbjct: 3   HRKIQSQGSI-PFSWEDKPGVSKITTPQECSLNQGLHALNL-ESPSPPPQPPRTASSNPN 62

Query: 65  ----------KIPPPPCRLPPPCNNAVSAKEEL----DDPFLLAYKECTKSVKN----KG 124
                     KIP PPC    P     SAK  +    +DPFL AY ECTKS ++    K 
Sbjct: 63  SLSLSAEEILKIPLPPCPSQQPPRRTTSAKGVIGWWQEDPFLAAYMECTKSSRSRQRKKS 122

Query: 125 INNDVG--VVKKSKFLFGRFSCKTIHSCDITDNSFFKL 138
             + VG    KKSKFL   FSCK   SC+  D++F +L
Sbjct: 123 NPSSVGSKPKKKSKFL---FSCK--GSCETHDDNFVRL 153

[Close]
BLAST of Csa6G495870 vs. NCBI nr
Match: gi|595830202|ref|XP_007206023.1| (hypothetical protein PRUPE_ppa012448mg [Prunus persica])

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-08
Identity = 62/166 (37.35%), Postives = 81/166 (48.80%), Query Frame = 1 

Query: 5   HRKLLSQGNIIPHHNQNPPGVSKFR------DFQALALHLHSSSIYKNPDGASQFDHLVS 64
           HRK+ SQG++ P   +  PGVSK        DF   AL+  S+    + D  ++  +   
Sbjct: 3   HRKVHSQGSV-PFSWEAMPGVSKVTNQDCPTDFGVGALNCLSAE-EDSGDSPNKLVNNPE 62

Query: 65  SKIPPPPCRLPPPCNNAVSAK----EELDDPFLLAYKECTKSV--------KNKGINND- 124
            KIP PPC L    + + S K        DPFLLAYKECTKS         K  GI N+ 
Sbjct: 63  IKIPLPPCPLLKAPSRSSSTKGFRWHVEADPFLLAYKECTKSTSTLNNNSGKLPGIENNK 122

Query: 125 --VGVV--KKSKFLFGRFSCKTIHSCDITDNSFFK------LPRDT 142
              G +  K  K  F  FSCK  +SCD+ +++F K      LPRDT
Sbjct: 123 KGFGAIGCKVRKSRFNMFSCK--NSCDVREDNFVKLSQLPALPRDT 164

The following BLAST results are available for this feature:
BLAST of Csa6G495870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGJ1_CUCSA7.9e-83100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495870 PE=4 SV=1[more]
W9RVC8_9ROSA2.3e-1342.31Uncharacterized protein OS=Morus notabilis GN=L484_012996 PE=4 SV=1[more]
A0A059B0E0_EUCGR7.6e-0936.08Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02331 PE=4 SV=1[more]
V4UJ40_9ROSI2.2e-0837.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026641mg PE=4 SV=1[more]
M5W0G0_PRUPE3.8e-0837.35Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012448mg PE=4 SV=1[more]
BLAST of Csa6G495870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193429|gb|KGN48633.1|1.1e-82100.00hypothetical protein Csa_6G495870 [Cucumis sativus][more]
gi|703139119|ref|XP_010106902.1|3.3e-1342.31hypothetical protein L484_012996 [Morus notabilis][more]
gi|629093588|gb|KCW59583.1|1.1e-0836.08hypothetical protein EUGRSUZ_H02331 [Eucalyptus grandis][more]
gi|567867023|ref|XP_006426134.1|3.2e-0837.97hypothetical protein CICLE_v10026641mg [Citrus clementina][more]
gi|595830202|ref|XP_007206023.1|5.4e-0837.35hypothetical protein PRUPE_ppa012448mg [Prunus persica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G495870.1Csa6G495870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G495870Cla014049Watermelon (97103) v1cuwmB500
Csa6G495870ClCG01G017790Watermelon (Charleston Gray)cuwcgB432
Csa6G495870Lsi01G008720Bottle gourd (USVL1VR-Ls)culsiB434
Csa6G495870Cla97C01G016950Watermelon (97103) v2cuwmbB412
Csa6G495870Bhi03G000815Wax gourdcuwgoB621
Csa6G495870CSPI06G29120Wild cucumber (PI 183967)cpicuB313
Csa6G495870CmaCh03G008950Cucurbita maxima (Rimu)cmacuB681
Csa6G495870CmoCh07G006400Cucurbita moschata (Rifu)cmocuB865
Csa6G495870CmoCh03G009380Cucurbita moschata (Rifu)cmocuB670
Csa6G495870Cp4.1LG19g10510Cucurbita pepo (Zucchini)cpecuB503
Csa6G495870Carg18531Silver-seed gourdcarcuB0003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G495870Wax gourdcuwgoB577
Csa6G495870Wax gourdcuwgoB648
Csa6G495870Cucumber (Chinese Long) v2cucuB072
Csa6G495870Cucumber (Chinese Long) v2cucuB143
Csa6G495870Cucumber (Gy14) v1cgycuB121
Csa6G495870Cucumber (Gy14) v1cgycuB496
Csa6G495870Cucumber (Gy14) v1cgycuB552
Csa6G495870Cucurbita maxima (Rimu)cmacuB034
Csa6G495870Cucurbita maxima (Rimu)cmacuB194
Csa6G495870Cucurbita maxima (Rimu)cmacuB775
Csa6G495870Cucurbita maxima (Rimu)cmacuB877
Csa6G495870Cucurbita moschata (Rifu)cmocuB024
Csa6G495870Cucurbita moschata (Rifu)cmocuB176
Csa6G495870Cucurbita moschata (Rifu)cmocuB477
Csa6G495870Cucurbita moschata (Rifu)cmocuB766
Csa6G495870Melon (DHL92) v3.5.1cumeB470
Csa6G495870Melon (DHL92) v3.5.1cumeB502
Csa6G495870Melon (DHL92) v3.5.1cumeB503
Csa6G495870Watermelon (Charleston Gray)cuwcgB503
Csa6G495870Watermelon (97103) v1cuwmB461
Csa6G495870Cucurbita pepo (Zucchini)cpecuB085
Csa6G495870Cucurbita pepo (Zucchini)cpecuB468
Csa6G495870Bottle gourd (USVL1VR-Ls)culsiB456
Csa6G495870Bottle gourd (USVL1VR-Ls)culsiB474
Csa6G495870Cucumber (Gy14) v2cgybcuB082
Csa6G495870Cucumber (Gy14) v2cgybcuB185
Csa6G495870Cucumber (Gy14) v2cgybcuB281
Csa6G495870Melon (DHL92) v3.6.1cumedB452
Csa6G495870Melon (DHL92) v3.6.1cumedB482
Csa6G495870Melon (DHL92) v3.6.1cumedB483
Csa6G495870Silver-seed gourdcarcuB0206
Csa6G495870Silver-seed gourdcarcuB0409
Csa6G495870Silver-seed gourdcarcuB0441
Csa6G495870Silver-seed gourdcarcuB0791
Csa6G495870Watermelon (97103) v2cuwmbB494