Cla97C01G016950.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G016950.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glutamine synthetase
Location	Cla97Chr01 : 30578628 .. 30579053 (-)
Sequence length	426

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

mRNA sequence

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

Coding sequence (CDS)

ATGAATCATAGAAAAGTCCTTTCACAAGGAAATGTTCCCTTCTCCTGGGAGGAAAGCCCATTCTGCTTCAGGGATTTCCAAGCCCTTGCCTTACATTCCTCCCCACTGCCACCGCCACATATCTCTCAATTCGACGTCGTTTCCAAGATTCCTCCACCGCCGTGTCGGCTTCCTCCCCGTTCGGTTACAAACGCCGTTTCTGCCAAGGAGGAAGACGACCCTTTTCTCGCGGCCTATAAGGAGTGTACTAAAAGTGCCAAAAATGGAAAATTTGTGCCCAACACAGGAAACAAAGGAGCTGTTGCTGTTGTGAAGAAGAGTAAGTTTTTTGGTTTTTCTTGTAAAAGTATTGATTCTTGTGAAATTAGAGATGCTAGTTTCTTCAAGCTTCGTAGAGACAGAATTCATGTCTCAACTTGGAAATAA

Protein sequence

MNHRKVLSQGNVPFSWEESPFCFRDFQALALHSSPLPPPHISQFDVVSKIPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKLRRDRIHVSTWK

Homology

[Close]

BLAST of Cla97C01G016950.1 vs. NCBI nr
Match: KGN48633.1 (hypothetical protein Csa_6G495870 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 9.8e-32
Identity = 96/151 (63.58%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 3   HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPP 62
           HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPP 64

Query: 63  PCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF-FG 122
           PCRLPP    NAVSAKEE DDPFL AYKECTKS K      N G    V VVKKSKF FG
Sbjct: 65  PCRLPP-PCNNAVSAKEELDDPFLLAYKECTKSVK------NKGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            FSCK+I SC+I D SFFKL RD IHVSTWK
Sbjct: 125 RFSCKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]

BLAST of Cla97C01G016950.1 vs. NCBI nr
Match: EXC12618.1 (hypothetical protein L484_012996 [Morus notabilis])

HSP 1 Score: 103.2 bits (256), Expect = 7.3e-19
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS- 60
           M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  ------------KIPPPPC-RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNT 120
                       KIPPPPC   PP   ++A   + ++DPFL AYKECTK  K GK   N 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQEDPFLLAYKECTKPVKKGK--DNE 120

Query: 121 GNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL 131
            NK    V+ KS F  FSCK  +SCE+R+ +F KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

[Close]

BLAST of Cla97C01G016950.1 vs. NCBI nr
Match: POO00665.1 (LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR-----------DFQALALHSSPLPPPHISQFDVVSK 60
           M+HRKV SQG++PFSWE+ P   +             +AL L S      H  Q  +   
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSH--QPTMTIP 60

Query: 61  IPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
           +PP P   PP   ++    K ++DPFL AYKECTK  K GK      NK     VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTK-VKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCKS  +CE++D +F KL
Sbjct: 121 TYFSCKS--TCEVKDENFVKL 136

[Close]

BLAST of Cla97C01G016950.1 vs. NCBI nr
Match: XP_021285055.1 (uncharacterized protein LOC110417148 [Herrania umbratica])

HSP 1 Score: 87.4 bits (215), Expect = 4.2e-14
Identity = 55/139 (39.57%), Postives = 66/139 (47.48%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR---------DFQALALHSSPLPPPHISQFDVVSKIP 60
           MN   V SQGNVPFSWE  P   +         D+    L S P PP          KIP
Sbjct: 1   MNQSIVHSQGNVPFSWENKPGVCKLTSQEGSKEDYFLQKLPSPPYPPESARILIHGVKIP 60

Query: 61  PPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKFFG 120
           PPPC       T+    ++ DDPFLAAYKECTKS   GK   + G  G      K   F 
Sbjct: 61  PPPCAFQHPFKTSRRGLRKSDDPFLAAYKECTKSTSKGKLAKSDGGSGL-----KKGMFN 120

Query: 121 FSCKSIDSCEIRDASFFKL 131
           FSCK   SC +R+ +  ++
Sbjct: 121 FSCKR--SCSVRNDNLVRI 132

[Close]

BLAST of Cla97C01G016950.1 vs. NCBI nr
Match: PON40333.1 (hypothetical protein PanWU01x14_298200 [Parasponia andersonii])

HSP 1 Score: 87.0 bits (214), Expect = 5.4e-14
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR---------DFQALALHSSPLPPPHISQFDVVSKIP 60
           M+HRKV SQG++PFSWE+ P   +         ++   AL         +S      KIP
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLIXSNGSKVSSTYNDLKIP 60

Query: 61  PPPCRL--PPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
            PPC +  PP   ++    K ++DPFL AYKECTK  K GK      NK   + VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKTNNGQQNKKG-SKVKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCK+  +CE++D +F KL
Sbjct: 121 TYFSCKT--TCEVKDENFVKL 138

[Close]

BLAST of Cla97C01G016950.1 vs. TrEMBL
Match: tr|A0A0A0KGJ1|A0A0A0KGJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-32
Identity = 96/151 (63.58%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 3   HRKVLSQGNVPFSWEESP---FCFRDFQALA--LHSSPL--PPPHISQFD--VVSKIPPP 62
           HRK+LSQGN+     ++P     FRDFQALA  LHSS +   P   SQFD  V SKIPPP
Sbjct: 5   HRKLLSQGNIIPHHNQNPPGVSKFRDFQALALHLHSSSIYKNPDGASQFDHLVSSKIPPP 64

Query: 63  PCRLPPRSVTNAVSAKEE-DDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF-FG 122
           PCRLPP    NAVSAKEE DDPFL AYKECTKS K      N G    V VVKKSKF FG
Sbjct: 65  PCRLPP-PCNNAVSAKEELDDPFLLAYKECTKSVK------NKGINNDVGVVKKSKFLFG 124

Query: 123 -FSCKSIDSCEIRDASFFKLRRDRIHVSTWK 142
            FSCK+I SC+I D SFFKL RD IHVSTWK
Sbjct: 125 RFSCKTIHSCDITDNSFFKLPRDTIHVSTWK 148

[Close]

BLAST of Cla97C01G016950.1 vs. TrEMBL
Match: tr|W9RVC8|W9RVC8_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.8e-19
Identity = 65/155 (41.94%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQALAL---HSSPLPPPHISQFDVVS- 60
           M HRKV SQG++PF WE+ P         C +D+++ AL    S   PP    QF ++S 
Sbjct: 1   MTHRKVHSQGSIPFLWEDKPGISKVTKQDCAKDYRSQALDLTSSKSSPPSKAQQFSLLSD 60

Query: 61  ------------KIPPPPC-RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNT 120
                       KIPPPPC   PP   ++A   + ++DPFL AYKECTK  K GK   N 
Sbjct: 61  GSKLVSATNDLLKIPPPPCLSQPPSRSSSAKGLRWQEDPFLLAYKECTKPVKKGK--DNE 120

Query: 121 GNKGAVAVVKKSKFFGFSCKSIDSCEIRDASFFKL 131
            NK    V+ KS F  FSCK  +SCE+R+ +F KL
Sbjct: 121 DNKKRSKVIMKSMFMYFSCK--NSCEVREDNFIKL 151

[Close]

BLAST of Cla97C01G016950.1 vs. TrEMBL
Match: tr|A0A2N9FZQ1|A0A2N9FZQ1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20630 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESP--------FCFRDFQ--ALALHSSPLPPPHISQFDVVS-- 60
           M+HRKV SQG++PFSWE+ P         C  D +  +L L SS    P +S    VS  
Sbjct: 1   MSHRKVHSQGSIPFSWEDKPGICKVTHQECPADIRQHSLKLTSSQSSTPCLSDGAKVSAQ 60

Query: 61  --KIPPPPC--RLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVV 120
             KIP PPC   LPPR   +    + ++DPFL AYKECTKS K+        NK  V+ +
Sbjct: 61  DLKIPLPPCPVLLPPRRSISLKGLRWQEDPFLVAYKECTKSVKSDTKPSGASNKAVVSKI 120

Query: 121 KKSKFFGFSCKSIDSCEIRDASFFK------LRRDRIHVS 139
           +K+K   + CK  +SCE+++ +  K      L R++I VS
Sbjct: 121 RKTKSMSW-CK--NSCEVKEDNILKFPRLPPLPREKIGVS 157

[Close]

BLAST of Cla97C01G016950.1 vs. TrEMBL
Match: tr|A0A2P5FS81|A0A2P5FS81_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 58/141 (41.13%), Postives = 74/141 (52.48%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR-----------DFQALALHSSPLPPPHISQFDVVSK 60
           M+HRKV SQG++PFSWE+ P   +             +AL L S      H  Q  +   
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLXSPMAQKSH--QPTMTIP 60

Query: 61  IPPPPCRLPPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
           +PP P   PP   ++    K ++DPFL AYKECTK  K GK      NK     VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKSNNGQQNKKGTK-VKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCKS  +CE++D +F KL
Sbjct: 121 TYFSCKS--TCEVKDENFVKL 136

[Close]

BLAST of Cla97C01G016950.1 vs. TrEMBL
Match: tr|A0A2P5AUW8|A0A2P5AUW8_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298200 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 0


Query: 1   MNHRKVLSQGNVPFSWEESPFCFR---------DFQALALHSSPLPPPHISQFDVVSKIP 60
           M+HRKV SQG++PFSWE+ P   +         ++   AL         +S      KIP
Sbjct: 1   MSHRKVYSQGSIPFSWEDKPGISKVTNQAEYSIEYGVEALDLIXSNGSKVSSTYNDLKIP 60

Query: 61  PPPCRL--PPRSVTNAVSAKEEDDPFLAAYKECTKSAKNGKFVPNTGNKGAVAVVKKSKF 120
            PPC +  PP   ++    K ++DPFL AYKECTK  K GK      NK   + VKKS F
Sbjct: 61  LPPCPIPQPPSRSSSTKGLKWQEDPFLLAYKECTKPIKKGKTNNGQQNKKG-SKVKKSLF 120

Query: 121 FGFSCKSIDSCEIRDASFFKL 131
             FSCK+  +CE++D +F KL
Sbjct: 121 TYFSCKT--TCEVKDENFVKL 138

The following BLAST results are available for this feature:

BLAST of Cla97C01G016950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48633.1	9.8e-32	63.58	hypothetical protein Csa_6G495870 [Cucumis sativus]	[more]
EXC12618.1	7.3e-19	41.94	hypothetical protein L484_012996 [Morus notabilis]	[more]
POO00665.1	2.4e-14	41.13	LOW QUALITY PROTEIN: hypothetical protein TorRG33x02_032960 [Trema orientalis]	[more]
XP_021285055.1	4.2e-14	39.57	uncharacterized protein LOC110417148 [Herrania umbratica]	[more]
PON40333.1	5.4e-14	40.43	hypothetical protein PanWU01x14_298200 [Parasponia andersonii]	[more]

BLAST of Cla97C01G016950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGJ1\|A0A0A0KGJ1_CUCSA	6.5e-32	63.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G495870 PE=4 SV=1	[more]
tr\|W9RVC8\|W9RVC8_9ROSA	4.8e-19	41.94	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012996 PE=4 SV=1	[more]
tr\|A0A2N9FZQ1\|A0A2N9FZQ1_FAGSY	1.2e-14	39.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20630 PE=4 SV=1	[more]
tr\|A0A2P5FS81\|A0A2P5FS81_9ROSA	1.6e-14	41.13	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_032960 PE=4 S...	[more]
tr\|A0A2P5AUW8\|A0A2P5AUW8_PARAD	3.6e-14	40.43	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298200 PE...	[more]

BLAST of Cla97C01G016950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G016950.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G016950	Cla97C01G016950	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G016950.1.CDS.1	Cla97C01G016950.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G016950.1.exon.1	Cla97C01G016950.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G016950.1	Cla97C01G016950.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33696	FAMILY NOT NAMED	coord: 1..131
None	No IPR available	PANTHER	PTHR33696:SF2	SUBFAMILY NOT NAMED	coord: 1..131