Cla021839 (gene) Watermelon (97103) v1

NameCla021839
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionThioesterase superfamily protein (AHRD V1 **-- D7BFE7_MEISD); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein
LocationChr5 : 6749676 .. 6750158 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAAAATAATCCTCCTCCTCCACCGTCTCAGCCGGCGGATCCGGACGCTCCGCTTAAGGCAGTCGGATTCAAGCTGGATCACGAATCTGCTCAGAGAGTGAGCGGCCGCATCGTCGTTTCCCCAATCTGCTGCCAGGTTCGTTCGATTTACAATCCGATTGCCCTAATTTCACATTGTTCTTCGATTTTTTTGTTTTCTTTTTTGGTTGAATCTGAGTTGATTCGTGGATGAATTTTGAAATTGAAGCCGTTTAATGTGTTGCACGGAGGAGTATCGGCGTTGATTGCAGAGGCTTTGGCGAGCAAGGGGGCTTATGTGGCGTCGGGTTACCGGAAAGTTGTCGGAATCCATCTCAGTATCAATCACTTGAAGAGCGCTGAGATGGGCGCCGTCGTTCTCGCCGAAGCTACTCCAGTCACCGTCGGCAGAACCATTCAGGTATCCATCGTTCTCTTCACTTTCTTAAATTCACCATAA

mRNA sequence

ATGTCGGAAAATAATCCTCCTCCTCCACCGTCTCAGCCGGCGGATCCGGACGCTCCGCTTAAGGCAGTCGGATTCAAGCTGGATCACGAATCTGCTCAGAGAGTGAGCGGCCGCATCGTCGTTTCCCCAATCTGCTGCCAGCCGTTTAATGTGTTGCACGGAGGAGTATCGGCGTTGATTGCAGAGGCTTTGGCGAGCAAGGGGGCTTATGTGGCGTCGGGTTACCGGAAAGTTGTCGGAATCCATCTCAGTATCAATCACTTGAAGAGCGCTGAGATGGGCGCCGTCGTTCTCGCCGAAGCTACTCCAGTCACCGTCGGCAGAACCATTCAGGTATCCATCGTTCTCTTCACTTTCTTAAATTCACCATAA

Coding sequence (CDS)

ATGTCGGAAAATAATCCTCCTCCTCCACCGTCTCAGCCGGCGGATCCGGACGCTCCGCTTAAGGCAGTCGGATTCAAGCTGGATCACGAATCTGCTCAGAGAGTGAGCGGCCGCATCGTCGTTTCCCCAATCTGCTGCCAGCCGTTTAATGTGTTGCACGGAGGAGTATCGGCGTTGATTGCAGAGGCTTTGGCGAGCAAGGGGGCTTATGTGGCGTCGGGTTACCGGAAAGTTGTCGGAATCCATCTCAGTATCAATCACTTGAAGAGCGCTGAGATGGGCGCCGTCGTTCTCGCCGAAGCTACTCCAGTCACCGTCGGCAGAACCATTCAGGTATCCATCGTTCTCTTCACTTTCTTAAATTCACCATAA

Protein sequence

MSENNPPPPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQVSIVLFTFLNSP
BLAST of Cla021839 vs. Swiss-Prot
Match: DNAT1_ARATH (1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 OS=Arabidopsis thaliana GN=DHNAT1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = 1

Query: 17  DAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYR 76
           D PL  +GF+ D  S  R++GR+ VSP+CCQPF VLHGGVSALIAE+LAS GA++ASG++
Sbjct: 12  DPPLHMLGFEFDELSPTRITGRLPVSPVCCQPFKVLHGGVSALIAESLASMGAHMASGFK 71

Query: 77  KVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           +V GI LSINHLKSA++G +V AEATPV+ G+TIQV
Sbjct: 72  RVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQV 107

BLAST of Cla021839 vs. Swiss-Prot
Match: DNAT2_ARATH (1,4-dihydroxy-2-naphthoyl-CoA thioesterase 2 OS=Arabidopsis thaliana GN=DHNAT2 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 1

Query: 17  DAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYR 76
           D PLK +GF  D  SA RVSG + ++  CCQPF VLHGGVSALIAEALAS GA +ASG++
Sbjct: 11  DQPLKILGFVFDELSATRVSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFK 70

Query: 77  KVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           +V GIHLSI+HL+ A +G +V AE+ PV+VG+ IQV
Sbjct: 71  RVAGIHLSIHHLRPAALGEIVFAESFPVSVGKNIQV 106

BLAST of Cla021839 vs. Swiss-Prot
Match: MENI_ECOLI (1,4-dihydroxy-2-naphthoyl-CoA hydrolase OS=Escherichia coli (strain K12) GN=menI PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.2e-06
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1

Query: 23 VGF---KLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVAS-GYRKV 82
          VGF   + +H     +   + V     QPF +LHGG S ++AE++ S   Y+ + G +KV
Sbjct: 21 VGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV 80

Query: 83 VGIHLSINHLKSAEMGAV 97
          VG+ ++ NH++SA  G V
Sbjct: 81 VGLEINANHVRSAREGRV 98

BLAST of Cla021839 vs. TrEMBL
Match: A0A0A0L876_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171760 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-32
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 1

Query: 17  DAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYR 76
           DAPL+++GF++ H S  +VSGR++VSPICCQPF VLHGGVSALIAE+LAS GA+ ASGY+
Sbjct: 14  DAPLQSLGFEVHHVSPHKVSGRLLVSPICCQPFKVLHGGVSALIAESLASMGAHKASGYQ 73

Query: 77  KVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           +V GIHLSINHLKSA +G +V+AEA PVTVGRTIQV
Sbjct: 74  RVAGIHLSINHLKSASLGELVIAEAVPVTVGRTIQV 109

BLAST of Cla021839 vs. TrEMBL
Match: M0TQN1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-31
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 1

Query: 7   PPPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALAS 66
           PPP S+ A+ DAPL A+GF++D  SA RV+GR+ V+  CCQPF VLHGGVSALIAEALAS
Sbjct: 4   PPPTSKTAELDAPLHAIGFEIDVVSATRVNGRLTVTESCCQPFKVLHGGVSALIAEALAS 63

Query: 67  KGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
            GA+VASGYR+V GI LSINH +SA  G  V AEATP+  G+TIQV
Sbjct: 64  MGAHVASGYRRVAGIQLSINHHRSARAGDRVFAEATPLQPGKTIQV 109

BLAST of Cla021839 vs. TrEMBL
Match: A0A059B690_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04139 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.9e-30
Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 1

Query: 4   NNPPPPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEA 63
           + P    S+  + D+PL AVGF+L+  SA RV+G+I+VS  CCQPF VLHGGVSA+IAE+
Sbjct: 2   DRPSSSLSKTEELDSPLHAVGFELEDISASRVTGKILVSHKCCQPFKVLHGGVSAMIAES 61

Query: 64  LASKGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           LAS GA+VASGYR+V GIHLSINH+KSA +G +V AEATPV++G+TIQV
Sbjct: 62  LASIGAFVASGYRQVAGIHLSINHVKSAVIGDLVRAEATPVSLGKTIQV 110

BLAST of Cla021839 vs. TrEMBL
Match: I1L5W0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G236500 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-29
Identity = 65/105 (61.90%), Postives = 86/105 (81.90%), Query Frame = 1

Query: 8   PPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASK 67
           PP S+ ++ DAPL+++GF++   S QRVSG + ++  CCQPF VLHGGVSAL+AE+LAS 
Sbjct: 5   PPSSKASEVDAPLQSIGFEIQDLSPQRVSGHLTITQKCCQPFKVLHGGVSALVAESLASI 64

Query: 68  GAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           GA++ASGY++V GI LSINHLKSA +G +V AEATP+ VG+TIQV
Sbjct: 65  GAHMASGYQRVAGIQLSINHLKSAVLGDLVFAEATPLNVGKTIQV 109

BLAST of Cla021839 vs. TrEMBL
Match: A0A059B5D3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04139 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 69/108 (63.89%), Postives = 88/108 (81.48%), Query Frame = 1

Query: 4   NNPPPPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEA 63
           + P    S+  + D+PL AVGF+L+  SA RV+G+I+VS  CCQPF VLHGGVSA+IAE+
Sbjct: 2   DRPSSSLSKTEELDSPLHAVGFELEDISASRVTGKILVSHKCCQPFKVLHGGVSAMIAES 61

Query: 64  LASKGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQ 112
           LAS GA+VASGYR+V GIHLSINH+KSA +G +V AEATPV++G+TIQ
Sbjct: 62  LASIGAFVASGYRQVAGIHLSINHVKSAVIGDLVRAEATPVSLGKTIQ 109

BLAST of Cla021839 vs. NCBI nr
Match: gi|449459808|ref|XP_004147638.1| (PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-32
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 1

Query: 17  DAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYR 76
           DAPL+++GF++ H S  +VSGR++VSPICCQPF VLHGGVSALIAE+LAS GA+ ASGY+
Sbjct: 14  DAPLQSLGFEVHHVSPHKVSGRLLVSPICCQPFKVLHGGVSALIAESLASMGAHKASGYQ 73

Query: 77  KVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           +V GIHLSINHLKSA +G +V+AEA PVTVGRTIQV
Sbjct: 74  RVAGIHLSINHLKSASLGELVIAEAVPVTVGRTIQV 109

BLAST of Cla021839 vs. NCBI nr
Match: gi|1021502191|ref|XP_016194295.1| (PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Arachis ipaensis])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 1

Query: 3   ENNPPPPPS----QPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSA 62
           EN  PPPPS    + A+ D PL  +GF+L   + QRVSG + ++P CCQPF VLHGGVSA
Sbjct: 2   ENQSPPPPSSSSSKTAEVDLPLHEIGFELQDLTPQRVSGHLKITPKCCQPFKVLHGGVSA 61

Query: 63  LIAEALASKGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           LIAEALAS GA++ASGY++V GI LSINHLK A++G +V AEATP+  G+TIQV
Sbjct: 62  LIAEALASIGAHMASGYQRVAGIQLSINHLKRADLGDLVFAEATPIVTGKTIQV 115

BLAST of Cla021839 vs. NCBI nr
Match: gi|659077071|ref|XP_008439017.1| (PREDICTED: uncharacterized protein LOC103483935 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 72/111 (64.86%), Postives = 88/111 (79.28%), Query Frame = 1

Query: 2   SENNPPPPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIA 61
           S +NP PP       DAPL++ GF++   S  +V+GR++VS ICCQPF VLHGGVSALIA
Sbjct: 24  STDNPNPPLLL----DAPLQSFGFEIHQVSPHKVAGRLLVSSICCQPFKVLHGGVSALIA 83

Query: 62  EALASKGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           E+LAS GA+ ASGY++V GIHLSINHLKSA +G +V+AEA PVTVGRTIQV
Sbjct: 84  ESLASMGAHKASGYQRVAGIHLSINHLKSAALGELVIAEAVPVTVGRTIQV 130

BLAST of Cla021839 vs. NCBI nr
Match: gi|695050625|ref|XP_009413306.1| (PREDICTED: uncharacterized protein LOC103994638 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-30
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 1

Query: 7   PPPPSQPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALAS 66
           PPP S+ A+ DAPL A+GF++D  SA RV+GR+ V+  CCQPF VLHGGVSALIAEALAS
Sbjct: 4   PPPTSKTAELDAPLHAIGFEIDVVSATRVNGRLTVTESCCQPFKVLHGGVSALIAEALAS 63

Query: 67  KGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
            GA+VASGYR+V GI LSINH +SA  G  V AEATP+  G+TIQV
Sbjct: 64  MGAHVASGYRRVAGIQLSINHHRSARAGDRVFAEATPLQPGKTIQV 109

BLAST of Cla021839 vs. NCBI nr
Match: gi|1012122498|ref|XP_015962749.1| (PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Arachis duranensis])

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-30
Identity = 69/113 (61.06%), Postives = 87/113 (76.99%), Query Frame = 1

Query: 6   PPPPPS------QPADPDAPLKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSAL 65
           PPPPPS      + A+ D PL  +GF+L   + QRVSG + ++P CCQPF VLHGGVSAL
Sbjct: 12  PPPPPSSSSSSSKTAEVDLPLHEIGFELQDLTPQRVSGHLKITPKCCQPFKVLHGGVSAL 71

Query: 66  IAEALASKGAYVASGYRKVVGIHLSINHLKSAEMGAVVLAEATPVTVGRTIQV 113
           IAEALAS GA++ASGY++V GI LSINHLK A++G ++ AEATPV +G+TIQV
Sbjct: 72  IAEALASIGAHMASGYQRVAGIQLSINHLKRADLGDLIFAEATPVVIGKTIQV 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DNAT1_ARATH1.1e-3065.631,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 OS=Arabidopsis thaliana GN=DHNAT1 P... [more]
DNAT2_ARATH1.9e-2762.501,4-dihydroxy-2-naphthoyl-CoA thioesterase 2 OS=Arabidopsis thaliana GN=DHNAT2 P... [more]
MENI_ECOLI4.2e-0635.901,4-dihydroxy-2-naphthoyl-CoA hydrolase OS=Escherichia coli (strain K12) GN=menI... [more]
Match NameE-valueIdentityDescription
A0A0A0L876_CUCSA1.8e-3272.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171760 PE=4 SV=1[more]
M0TQN1_MUSAM9.9e-3166.98Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A059B690_EUCGR4.9e-3064.22Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04139 PE=4 SV=1[more]
I1L5W0_SOYBN1.1e-2961.90Uncharacterized protein OS=Glycine max GN=GLYMA_09G236500 PE=4 SV=1[more]
A0A059B5D3_EUCGR1.4e-2963.89Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04139 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449459808|ref|XP_004147638.1|2.6e-3272.92PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Cucumis sativus][more]
gi|1021502191|ref|XP_016194295.1|1.1e-3061.40PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Arachis ipaensis][more]
gi|659077071|ref|XP_008439017.1|1.1e-3064.86PREDICTED: uncharacterized protein LOC103483935 [Cucumis melo][more]
gi|695050625|ref|XP_009413306.1|1.4e-3066.98PREDICTED: uncharacterized protein LOC103994638 [Musa acuminata subsp. malaccens... [more]
gi|1012122498|ref|XP_015962749.1|1.9e-3061.06PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Arachis duranensis... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003736PAAI_dom
IPR006683Thioestr_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042372 phylloquinone biosynthetic process
biological_process GO:0008150 biological_process
biological_process GO:0051289 protein homotetramerization
cellular_component GO:0005777 peroxisome
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
molecular_function GO:0047617 acyl-CoA hydrolase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0061522 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU11517watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU63092watermelon EST collection version 2.0transcribed_cluster
WMU70586watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021839Cla021839.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU63092WMU63092transcribed_cluster
WMU70586WMU70586transcribed_cluster
WMU11517WMU11517transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003736Phenylacetic acid degradation-related domainTIGRFAMsTIGR00369TIGR00369coord: 22..112
score: 6.1
IPR006683Thioesterase domainPFAMPF030614HBTcoord: 49..112
score: 2.
NoneNo IPR availablePANTHERPTHR12418FAMILY NOT NAMEDcoord: 16..112
score: 1.7
NoneNo IPR availablePANTHERPTHR12418:SF31SUBFAMILY NOT NAMEDcoord: 16..112
score: 1.7