WMU70586 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU70586
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Thioesterase superfamily protein
Location	Chr5 : 6747242 .. 6750234 (-)
Sequence length	432

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCTCACTGTCACCTTCATCCAATCCTTACCTCTCATTCTCCACTCCGGCCATCCGATACCGATTCGCAACCAAAATGTCGGAAAATAATCCTCCTCCTCCACCGTCTCAGCCGGCGGATCCGGACGCTCCGCTTAAGGCAGTCGGATTCAAGCTGGATCACGAATCTGCTCAGAGAGTGAGCGGCCGCATCGTCGTTTCCCCAATCTGCTGCCAGCCGTTTAATGTGTTGCACGGAGGAGTATCGGCGTTGATTGCAGAGGCTTTGGCGAGCAAGGGGGCTTATGTGGCGTCGGGTTACCGGAAAGTTGTCGGAATCCATCTCAGTATCAATCACTTGAGGAGCGCTGAGATGGGCGCCGTCGTTCTCGCCGAAGCTACTCCAGTCACCGTCGCAGAACCATTCAGGTATGGGATGTACAATTATGGAAAT

Library


Library category	ESTs
watermelon fruit 26d library	1

Homology

[Close]

BLAST of WMU70586 vs. TAIR10
Match: AT1G48320.1 (AT1G48320.1 Thioesterase superfamily protein)

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-27
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L  +GF+ D  S  R++GR+ VSP+CCQPF VLHGGVSALIAE+LAS GA++ASG+++V 
Sbjct: 15  LHMLGFEFDELSPTRITGRLPVSPVCCQPFKVLHGGVSALIAESLASMGAHMASGFKRVA 74

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GI LSINHL+SA++G +V AEATPV+  +
Sbjct: 75  GIQLSINHLKSADLGDLVFAEATPVSTGK 103

Query: 253  312
           
Sbjct: 135  103

Query: 313  372
           
Sbjct: 195  103

Query: 373  400
           
Sbjct: 255  103

[Close]

BLAST of WMU70586 vs. TAIR10
Match: AT5G48950.1 (AT5G48950.1 Thioesterase superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.9e-25
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           LK +GF  D  SA RVSG + ++  CCQPF VLHGGVSALIAEALAS GA +ASG+++V 
Sbjct: 14  LKILGFVFDELSATRVSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFKRVA 73

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GIHLSI+HLR A +G +V AE+ PV+V +
Sbjct: 74  GIHLSIHHLRPAALGEIVFAESFPVSVGK 102

Query: 253  312
           
Sbjct: 134  102

Query: 313  372
           
Sbjct: 194  102

Query: 373  400
           
Sbjct: 254  102

[Close]

BLAST of WMU70586 vs. Swiss-Prot
Match: DNAT1_ARATH (1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 OS=Arabidopsis thaliana GN=DHNAT1 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-26
Identity = 55/89 (61.80%), Postives = 71/89 (79.78%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L  +GF+ D  S  R++GR+ VSP+CCQPF VLHGGVSALIAE+LAS GA++ASG+++V 
Sbjct: 15  LHMLGFEFDELSPTRITGRLPVSPVCCQPFKVLHGGVSALIAESLASMGAHMASGFKRVA 74

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GI LSINHL+SA++G +V AEATPV+  +
Sbjct: 75  GIQLSINHLKSADLGDLVFAEATPVSTGK 103

Query: 253  312
           
Sbjct: 135  103

Query: 313  372
           
Sbjct: 195  103

Query: 373  400
           
Sbjct: 255  103

[Close]

BLAST of WMU70586 vs. Swiss-Prot
Match: DNAT2_ARATH (1,4-dihydroxy-2-naphthoyl-CoA thioesterase 2 OS=Arabidopsis thaliana GN=DHNAT2 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.2e-24
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           LK +GF  D  SA RVSG + ++  CCQPF VLHGGVSALIAEALAS GA +ASG+++V 
Sbjct: 14  LKILGFVFDELSATRVSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFKRVA 73

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GIHLSI+HLR A +G +V AE+ PV+V +
Sbjct: 74  GIHLSIHHLRPAALGEIVFAESFPVSVGK 102

Query: 253  312
           
Sbjct: 134  102

Query: 313  372
           
Sbjct: 194  102

Query: 373  400
           
Sbjct: 254  102

[Close]

BLAST of WMU70586 vs. Swiss-Prot
Match: MENI_ECOLI (1,4-dihydroxy-2-naphthoyl-CoA hydrolase OS=Escherichia coli (strain K12) GN=menI PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 1


Query: 142 VGF---KLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVAS-GYRKV 201
           VGF   + +H     +   + V     QPF +LHGG S ++AE++ S   Y+ + G +KV
Sbjct: 21  VGFLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKV 80

Query: 202 VGIHLSINHLRSAEMGAV 261
           VG+ ++ NH+RSA  G V
Sbjct: 81  VGLEINANHVRSAREGRV 98

Query: 262  321
           
Sbjct: 141  98

Query: 322  364
           
Sbjct: 201  98

[Close]

BLAST of WMU70586 vs. NCBI nr
Match: gi|449459808|ref|XP_004147638.1| (PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 60/87 (68.97%), Postives = 76/87 (87.36%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L+++GF++ H S  +VSGR++VSPICCQPF VLHGGVSALIAE+LAS GA+ ASGY++V 
Sbjct: 17  LQSLGFEVHHVSPHKVSGRLLVSPICCQPFKVLHGGVSALIAESLASMGAHKASGYQRVA 76

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTV 252
           GIHLSINHL+SA +G +V+AEA PVTV
Sbjct: 77  GIHLSINHLKSASLGELVIAEAVPVTV 103

Query: 253  312
           
Sbjct: 137  103

Query: 313  372
           
Sbjct: 197  103

Query: 373  394
           
Sbjct: 257  103

[Close]

BLAST of WMU70586 vs. NCBI nr
Match: gi|629095417|gb|KCW61412.1| (hypothetical protein EUGRSUZ_H04139 [Eucalyptus grandis])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 61/96 (63.54%), Postives = 80/96 (83.33%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L AVGF+L+  SA RV+G+I+VS  CCQPF VLHGGVSA+IAE+LAS GA+VASGYR+V 
Sbjct: 18  LHAVGFELEDISASRVTGKILVSHKCCQPFKVLHGGVSAMIAESLASIGAFVASGYRQVA 77

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAEPFRYGMY 252
           GIHLSINH++SA +G +V AEATPV++ +  ++G +
Sbjct: 78  GIHLSINHVKSAVIGDLVRAEATPVSLGKTIQFGRW 113

Query: 253  312
           
Sbjct: 138  113

Query: 313  372
           
Sbjct: 198  113

Query: 373  421
           
Sbjct: 258  113

[Close]

BLAST of WMU70586 vs. NCBI nr
Match: gi|702447387|ref|XP_010024888.1| (PREDICTED: uncharacterized protein LOC104415310 [Eucalyptus grandis])

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-24
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L AVGF+L+  SA RV+G+I+VS  CCQPF VLHGGVSA+IAE+LAS GA+VASGYR+V 
Sbjct: 18  LHAVGFELEDISASRVTGKILVSHKCCQPFKVLHGGVSAMIAESLASIGAFVASGYRQVA 77

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GIHLSINH++SA +G +V AEATPV++ +
Sbjct: 78  GIHLSINHVKSAVIGDLVRAEATPVSLGK 106

Query: 253  312
           
Sbjct: 138  106

Query: 313  372
           
Sbjct: 198  106

Query: 373  400
           
Sbjct: 258  106

[Close]

BLAST of WMU70586 vs. NCBI nr
Match: gi|567134190|ref|XP_006393434.1| (hypothetical protein EUTSA_v10011840mg [Eutrema salsugineum])

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 57/89 (64.04%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L A+GF++D  S  RV+GR+ VSPICCQPF VLHGGVSALIAE+LAS GA++ASG+++V 
Sbjct: 17  LHALGFEIDELSPTRVTGRLPVSPICCQPFKVLHGGVSALIAESLASMGAHMASGFKRVA 76

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GI LSINHL+SA++G +V AEA+PV+  +
Sbjct: 77  GIQLSINHLKSADLGDLVFAEASPVSTGK 105

Query: 253  312
           
Sbjct: 137  105

Query: 313  372
           
Sbjct: 197  105

Query: 373  400
           
Sbjct: 257  105

[Close]

BLAST of WMU70586 vs. NCBI nr
Match: gi|1009163640|ref|XP_015900072.1| (PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 57/89 (64.04%), Postives = 76/89 (85.39%), Query Frame = 1


Query: 133 LKAVGFKLDHESAQRVSGRIVVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYRKVV 192
           L+  GF+++  SA R+SGR+ V+  CCQPF VLHGGVSALI+EALAS GA++ASGY++V 
Sbjct: 28  LQITGFQIEELSAHRISGRLHVTEKCCQPFKVLHGGVSALISEALASIGAHMASGYQRVA 87

Query: 193 GIHLSINHLRSAEMGAVVLAEATPVTVAE 252
           GIHLSINHL+SA++G +VLAEA+P+TV +
Sbjct: 88  GIHLSINHLKSAKLGDLVLAEASPITVGK 116

Query: 253  312
           
Sbjct: 148  116

Query: 313  372
           
Sbjct: 208  116

Query: 373  400
           
Sbjct: 268  116

The following BLAST results are available for this feature:

BLAST of WMU70586 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48320.1	3.1e-27	61.80	Thioesterase superfamily protein	[more]
AT5G48950.1	2.9e-25	61.80	Thioesterase superfamily protein	[more]

BLAST of WMU70586 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DNAT1_ARATH	5.5e-26	61.80	1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 OS=Arabidopsis thaliana GN=DHNAT1 P...	[more]
DNAT2_ARATH	5.2e-24	61.80	1,4-dihydroxy-2-naphthoyl-CoA thioesterase 2 OS=Arabidopsis thaliana GN=DHNAT2 P...	[more]
MENI_ECOLI	2.2e-06	37.18	1,4-dihydroxy-2-naphthoyl-CoA hydrolase OS=Escherichia coli (strain K12) GN=menI...	[more]

BLAST of WMU70586 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459808\|ref\|XP_004147638.1\|	1.5e-26	68.97	PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [Cucumis sativus]	[more]
gi\|629095417\|gb\|KCW61412.1\|	1.2e-25	63.54	hypothetical protein EUGRSUZ_H04139 [Eucalyptus grandis]	[more]
gi\|702447387\|ref\|XP_010024888.1\|	1.8e-24	67.42	PREDICTED: uncharacterized protein LOC104415310 [Eucalyptus grandis]	[more]
gi\|567134190\|ref\|XP_006393434.1\|	2.3e-24	64.04	hypothetical protein EUTSA_v10011840mg [Eutrema salsugineum]	[more]
gi\|1009163640\|ref\|XP_015900072.1\|	2.3e-24	64.04	PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 isoform X1 [Ziziphus juj...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR003736	PAAI_dom
IPR006683	Thioestr_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021839	Cla021839	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S3_0060184	S3_0060184	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003736	Phenylacetic acid degradation-related domain	TIGRFAMs	TIGR00369	TIGR00369	coord: 47..132 score: 3.1
IPR006683	Thioesterase domain	PFAM	PF03061	4HBT	coord: 74..130 score: 5.
None	No IPR available	PANTHER	PTHR12418	FAMILY NOT NAMED	coord: 42..131 score: 4.3
None	No IPR available	PANTHER	PTHR12418:SF36	SUBFAMILY NOT NAMED	coord: 42..131 score: 4.3