Cla021384 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021384
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 2722220 .. 2722914 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTCAACAATTCTCCGAGAAATTCAAATCTTCTCAACACACTCAAACCCTTGATCATTTTAGGGTTCATCTTCTCCTTGCTATCCACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGTAAGTTTTGTTCGTCTTCTCGGATCGTGTTTTTCTTCATTTTCGCTTGATTCTACTGAATCGTGTTTCAACTATTCAGGATGCTGAAACCAGGCAAAAGAAGCAGGAGTGTTACGCCGACATCGAGAGGTGAGCGTTTATTTCAAGCTATTTTTAGGGTTTTTTTTTTTTCCCATTCCTCTCGAATTGGGTGTAGCTGTAAAATGCTCTGAGAGCAACTCTGGAATGTGATTTCTCCTTCCCTTTTTTTCATCCTATCTGCTACTGCTTTGATGGGTTACGATAATGCGTTAAAATGTGCAGTGGATTGTGGGGTTGGCAATGCAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTATGATCTAGTTTATGGCAGTGATCCGGTGAGAGAATGTTATTTTTATTGTTATTTGCGCGTATTTTTCTGGCTGTTCTTCTTTAATTGCTAAGTCTAACGTTGGATTTGTGTTAATGTAGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTATAAGTATTGTATATATAAGTAA

mRNA sequence

ATGGAAGTCAACAATTCTCCGAGAAATTCAAATCTTCTCAACACACTCAAACCCTTGATCATTTTAGGGTTCATCTTCTCCTTGCTATCCACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGATGCTGAAACCAGGCAAAAGAAGCAGGAGTGTTACGCCGACATCGAGAGTGGATTGTGGGGTTGGCAATGCAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTATGATCTAGTTTATGGCAGTGATCCGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTATAAGTATTGTATATATAAGTAA

Coding sequence (CDS)

ATGGAAGTCAACAATTCTCCGAGAAATTCAAATCTTCTCAACACACTCAAACCCTTGATCATTTTAGGGTTCATCTTCTCCTTGCTATCCACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGATGCTGAAACCAGGCAAAAGAAGCAGGAGTGTTACGCCGACATCGAGAGTGGATTGTGGGGTTGGCAATGCAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTATGATCTAGTTTATGGCAGTGATCCGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTATAAGTATTGTATATATAAGTAA

Protein sequence

MEVNNSPRNSNLLNTLKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK

Homology

[Close]

BLAST of Cla021384 vs. TrEMBL
Match: A0A0A0L9A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.0e-58
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 1   MEVNNSPRNSNLLNTLKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIES 60
           MEVNNS RNS LLNTLKPLI+LG IFSLL+THTVLAKSRRPVTDAETRQKKQECYADIES
Sbjct: 1   MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]

BLAST of Cla021384 vs. TrEMBL
Match: R0HGJ0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003646mg PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.8e-34
Identity = 72/97 (74.23%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 19  LIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCA 78
           L++L   F LLS   VLAKS RP++D E RQKK ECYADIESGLWGWQC SS   KENCA
Sbjct: 13  LLLLILSFCLLSC--VLAKSPRPISDVEIRQKKNECYADIESGLWGWQCISSAIAKENCA 72

Query: 79  LRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           LRCLSP CY+L+Y SDPLEEGEKDL RSQEYKYC+YK
Sbjct: 73  LRCLSPVCYELIYESDPLEEGEKDLIRSQEYKYCMYK 107

[Close]

BLAST of Cla021384 vs. TrEMBL
Match: A0A059C4C6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01772 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 8.9e-34
Identity = 69/100 (69.00%), Postives = 81/100 (81.00%), Query Frame = 1


Query: 16  LKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKE 75
           L+PL  L F+  LL+   VLAKSR P++D E RQKK ECYAD+ESGLWGWQC+SS   KE
Sbjct: 10  LRPLRALAFLL-LLAAPAVLAKSRIPISDNEIRQKKSECYADVESGLWGWQCKSSMIAKE 69

Query: 76  NCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           NCAL+CLSPTCY++VY SDPLEEGEKD  R QEYKYC++K
Sbjct: 70  NCALKCLSPTCYEIVYESDPLEEGEKDYTRGQEYKYCMHK 108

[Close]

BLAST of Cla021384 vs. TrEMBL
Match: D7LX25_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488628 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-33
Identity = 67/100 (67.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 16  LKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKE 75
           L   + L  + S+     V +KS RP++D E RQKK ECYADIESGLWGWQC+SS   KE
Sbjct: 7   LSSFVCLLLLLSICFVPCVFSKSLRPISDVEIRQKKSECYADIESGLWGWQCKSSAIAKE 66

Query: 76  NCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           NCALRCLSP CY L+Y SDPLEEGEKDL RSQEYKYC+YK
Sbjct: 67  NCALRCLSPVCYQLIYESDPLEEGEKDLIRSQEYKYCMYK 106

[Close]

BLAST of Cla021384 vs. TrEMBL
Match: V4N7W0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014961mg PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-33
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1


Query: 19  LIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCA 78
           ++ +  + SL     VL+KS RP++D E RQKK ECYADIESGLWGW+C+SS   KENCA
Sbjct: 33  IVCILLLLSLCLVPCVLSKSPRPISDVEIRQKKSECYADIESGLWGWRCKSSPIAKENCA 92

Query: 79  LRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           LRC+SP CY+L+Y SDPLEEGEKDL RSQEYKYC+YK
Sbjct: 93  LRCVSPACYELIYESDPLEEGEKDLVRSQEYKYCLYK 129

[Close]

BLAST of Cla021384 vs. NCBI nr
Match: gi|659075702|ref|XP_008438284.1| (PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 4.4e-58
Identity = 109/115 (94.78%), Postives = 113/115 (98.26%), Query Frame = 1


Query: 1   MEVNNSPRNSNLLNTLKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIES 60
           MEVNNS +NS LLNTLKPLI+LGFIFSLL+THTV+AKSRRPVTDAETRQKKQECYADIES
Sbjct: 1   MEVNNSSKNSKLLNTLKPLILLGFIFSLLTTHTVIAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]

BLAST of Cla021384 vs. NCBI nr
Match: gi|449432364|ref|XP_004133969.1| (PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 5.7e-58
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1


Query: 1   MEVNNSPRNSNLLNTLKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIES 60
           MEVNNS RNS LLNTLKPLI+LG IFSLL+THTVLAKSRRPVTDAETRQKKQECYADIES
Sbjct: 1   MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]

BLAST of Cla021384 vs. NCBI nr
Match: gi|727642708|ref|XP_010492721.1| (PREDICTED: uncharacterized protein LOC104770070 [Camelina sativa])

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-34
Identity = 71/97 (73.20%), Postives = 79/97 (81.44%), Query Frame = 1


Query: 19  LIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCA 78
           L+IL F F      +VLAKS RP++D E RQKK ECYADIESGLWGWQC+SS   KENCA
Sbjct: 11  LLILSFCF----LSSVLAKSPRPISDVEIRQKKNECYADIESGLWGWQCKSSAIAKENCA 70

Query: 79  LRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           LRCLSP CY+L+Y SDPLEEGEKDL RSQEYKYC+YK
Sbjct: 71  LRCLSPVCYELIYESDPLEEGEKDLIRSQEYKYCMYK 103

[Close]

BLAST of Cla021384 vs. NCBI nr
Match: gi|764629331|ref|XP_011469420.1| (PREDICTED: uncharacterized protein LOC105352952 [Fragaria vesca subsp. vesca])

HSP 1 Score: 152.9 bits (385), Expect = 3.4e-34
Identity = 72/108 (66.67%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 8   RNSNLLNTLKPLIILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQC 67
           RNS+  ++   + IL  + SLL +  VLAKSRRP+TD ETRQKK +CYADIESGLWGWQC
Sbjct: 4   RNSSSPSSPLRIQIL-LVLSLLFSPIVLAKSRRPITDIETRQKKAQCYADIESGLWGWQC 63

Query: 68  RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           +SS   KENC L+CLSPTCY++VY SDPLEEGEKDL R QE+KYC++K
Sbjct: 64  KSSMIAKENCVLKCLSPTCYEIVYESDPLEEGEKDLVRGQEFKYCMHK 110

[Close]

BLAST of Cla021384 vs. NCBI nr
Match: gi|645252399|ref|XP_008232105.1| (PREDICTED: uncharacterized protein LOC103331271 [Prunus mume])

HSP 1 Score: 151.8 bits (382), Expect = 7.5e-34
Identity = 69/95 (72.63%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 21  ILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQECYADIESGLWGWQCRSSTTEKENCALR 80
           +L F+  LL + TVLAKSRRP++D ETRQKK +CYADIESGLWGWQC+SS   KENCALR
Sbjct: 16  VLLFLLLLLLSPTVLAKSRRPISDFETRQKKNQCYADIESGLWGWQCKSSLIAKENCALR 75

Query: 81  CLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 116
           CLS TCY+LVY SDPLEEG KDL R QE+KYC++K
Sbjct: 76  CLSSTCYELVYESDPLEEGGKDLVRGQEFKYCMHK 110

The following BLAST results are available for this feature:

BLAST of Cla021384 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A0_CUCSA	4.0e-58	95.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1	[more]
R0HGJ0_9BRAS	6.8e-34	74.23	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003646mg PE=4 SV=1	[more]
A0A059C4C6_EUCGR	8.9e-34	69.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E01772 PE=4 SV=1	[more]
D7LX25_ARALL	3.4e-33	67.00	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
V4N7W0_EUTSA	4.4e-33	67.01	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014961mg PE=4 SV=1	[more]

BLAST of Cla021384 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075702\|ref\|XP_008438284.1\|	4.4e-58	94.78	PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo]	[more]
gi\|449432364\|ref\|XP_004133969.1\|	5.7e-58	95.65	PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus]	[more]
gi\|727642708\|ref\|XP_010492721.1\|	2.6e-34	73.20	PREDICTED: uncharacterized protein LOC104770070 [Camelina sativa]	[more]
gi\|764629331\|ref\|XP_011469420.1\|	3.4e-34	66.67	PREDICTED: uncharacterized protein LOC105352952 [Fragaria vesca subsp. vesca]	[more]
gi\|645252399\|ref\|XP_008232105.1\|	7.5e-34	72.63	PREDICTED: uncharacterized protein LOC103331271 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU11948	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU16581	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU37187	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021384	Cla021384.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU37187	WMU37187	transcribed_cluster
WMU16581	WMU16581	transcribed_cluster
WMU11948	WMU11948	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35455	FAMILY NOT NAMED	coord: 1..115 score: 6.5
None	No IPR available	PANTHER	PTHR35455:SF1	SUBFAMILY NOT NAMED	coord: 1..115 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021384	Cla97C05G083570	Watermelon (97103) v2	wmwmbB206
Cla021384	Csa3G129480	Cucumber (Chinese Long) v2	cuwmB233
Cla021384	MELO3C006276	Melon (DHL92) v3.5.1	mewmB461
Cla021384	ClCG05G002970	Watermelon (Charleston Gray)	wcgwmB286
Cla021384	CSPI03G10400	Wild cucumber (PI 183967)	cpiwmB231
Cla021384	Cucsa.256810	Cucumber (Gy14) v1	cgywmB479
Cla021384	CmaCh14G019260	Cucurbita maxima (Rimu)	cmawmB242
Cla021384	CmoCh14G019810	Cucurbita moschata (Rifu)	cmowmB231
Cla021384	Lsi05G018820	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021384	CsGy3G010520	Cucumber (Gy14) v2	cgybwmB217
Cla021384	MELO3C006276.2	Melon (DHL92) v3.6.1	medwmB447
Cla021384	Carg14896	Silver-seed gourd	carwmB0617
Cla021384	CsaV3_3G010550	Cucumber (Chinese Long) v3	cucwmB239
Cla021384	Bhi01G000127	Wax gourd	wgowmB203

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021384	Silver-seed gourd	carwmB0218
Cla021384	Silver-seed gourd	carwmB0961
Cla021384	Silver-seed gourd	carwmB1075
Cla021384	Cucumber (Chinese Long) v3	cucwmB249
Cla021384	Watermelon (97103) v2	wmwmbB197
Cla021384	Watermelon (97103) v2	wmwmbB217
Cla021384	Wax gourd	wgowmB046
Cla021384	Watermelon (97103) v1	wmwmB020
Cla021384	Watermelon (97103) v1	wmwmB046
Cla021384	Cucumber (Gy14) v1	cgywmB569
Cla021384	Cucumber (Gy14) v1	cgywmB586
Cla021384	Cucurbita maxima (Rimu)	cmawmB344
Cla021384	Cucurbita maxima (Rimu)	cmawmB798
Cla021384	Cucurbita moschata (Rifu)	cmowmB340
Cla021384	Cucurbita moschata (Rifu)	cmowmB793
Cla021384	Cucurbita moschata (Rifu)	cmowmB856
Cla021384	Melon (DHL92) v3.5.1	mewmB375
Cla021384	Melon (DHL92) v3.5.1	mewmB475
Cla021384	Watermelon (Charleston Gray)	wcgwmB031
Cla021384	Watermelon (Charleston Gray)	wcgwmB331
Cla021384	Cucurbita pepo (Zucchini)	cpewmB151
Cla021384	Cucurbita pepo (Zucchini)	cpewmB331
Cla021384	Cucurbita pepo (Zucchini)	cpewmB613
Cla021384	Cucurbita pepo (Zucchini)	cpewmB845
Cla021384	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021384	Bottle gourd (USVL1VR-Ls)	lsiwmB370
Cla021384	Bottle gourd (USVL1VR-Ls)	lsiwmB450
Cla021384	Cucumber (Gy14) v2	cgybwmB228
Cla021384	Melon (DHL92) v3.6.1	medwmB452