WMU16581 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU16581
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Signal transducer, putative
Location	Chr5 : 2720443 .. 2722899 (-)
Sequence length	518

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCCGAGAAATTCAAATCTTCTCAACACACTCAAACCCTTGATCATTTTAGGGTTCATCTTCTCCTTGCTATCCACCCATACAGTTCTCGCCAAATCTCGCCGTCCAGTCACTGATGCTGAAACCAGGACAAAAGAAGCAGGAGTGTTACGCCGACATCGAGAGATCTTCAACTACCGAAAAGGAAAATTGTGCCCTGCGATGTCTTTCTCCTACTTGTTATGATCTAGTTTATGGCAGTGATCCGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTATAAGTATTGTATATATAAGTTATCAATGGGGGAGGAGTCTGGAGGGGTATTAAGGGCTCCTTTGACTACTGATGTTTGTCTGCTTTCTCGAGATTGTCTGTTATTTTAACTGTCTGGTGTTCCGTTATGCCCTGTTCTTCTGACATTTGGGTCAAAATTTGAGGTACAAATCCAATCCCGAGTTCATATTTTACGTTCCTTTCCTTCTCTCTTATTTTATTTTAATTATAA

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1
watermelon fruit 26d library	2
watermelon fruit 34d library	2

Homology

[Close]

BLAST of WMU16581 vs. TAIR10
Match: AT5G17610.1 (AT5G17610.1 unknown protein)

HSP 1 Score: 107.5 bits (267), Expect = 8.6e-24
Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKK ECY DIE        +SS   KENCALRCLSP CY L+Y SDPLEEGEKDL RSQE
Sbjct: 41  QKKSECYGDIESGLWGWQCKSSAIAKENCALRCLSPVCYQLIYESDPLEEGEKDLIRSQE 100

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYC+YK S+GE   GV
Sbjct: 101 YKYCMYKSSLGESLEGV 117

Query: 250  309
           
Sbjct: 161  117

Query: 310  337
           
Sbjct: 221  117

[Close]

BLAST of WMU16581 vs. TrEMBL
Match: A0A0A0L9A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.9e-28
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKKQECYADIE        RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE
Sbjct: 49  QKKQECYADIESGLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 108

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYCIYKLSMGE   G+
Sbjct: 109 YKYCIYKLSMGESLEGI 125

Query: 250  309
           
Sbjct: 169  125

Query: 310  337
           
Sbjct: 229  125

[Close]

BLAST of WMU16581 vs. TrEMBL
Match: A0A0A0L9A0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-05
Identity = 29/44 (65.91%), Postives = 30/44 (68.18%), Query Frame = 3


Query: 6   RNSNLLNTLKPXXXXXXXXXXXXTHTVLAKSRRPVTDAETRTKE 65
           RNS LLNTLKP            THTVLAKSRRPVTDAETR K+
Sbjct: 8   RNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKK 51

Query: 66   125
           
Sbjct: 68   51

Query: 126  138
           
Sbjct: 128  51

HSP 2 Score: 113.2 bits (282), Expect = 3.1e-22
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 130 QKKQECYADIERSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYKL 189
           QKK+ CY D+E+SS TEKENC LRCLSP CYDL+YG DPLEEGE D  RSQEYKYC++K 
Sbjct: 51  QKKEACYTDVEKSSPTEKENCVLRCLSPECYDLIYGGDPLEEGELDYVRSQEYKYCMHKS 110

Query: 190 SMGEESGGV 249
           S+GE   GV
Sbjct: 111 SLGESLDGV 119

Query: 250  309
           
Sbjct: 171  119

Query: 310  337
           
Sbjct: 231  119

[Close]

BLAST of WMU16581 vs. TrEMBL
Match: R0HGJ0_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003646mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 54/77 (70.13%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 130 QKKQECYADIER--------SSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKK ECYADIE         SS   KENCALRCLSP CY+L+Y SDPLEEGEKDL RSQE
Sbjct: 41  QKKNECYADIESGLWGWQCISSAIAKENCALRCLSPVCYELIYESDPLEEGEKDLIRSQE 100

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYC+YKLS+GE   GV
Sbjct: 101 YKYCMYKLSLGESLDGV 117

Query: 250  309
           
Sbjct: 161  117

Query: 310  337
           
Sbjct: 221  117

[Close]

BLAST of WMU16581 vs. TrEMBL
Match: D7LX25_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488628 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.5e-21
Identity = 53/77 (68.83%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKK ECYADIE        +SS   KENCALRCLSP CY L+Y SDPLEEGEKDL RSQE
Sbjct: 40  QKKSECYADIESGLWGWQCKSSAIAKENCALRCLSPVCYQLIYESDPLEEGEKDLIRSQE 99

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYC+YK S+GE   GV
Sbjct: 100 YKYCMYKSSLGESLDGV 116

Query: 250  309
           
Sbjct: 160  116

Query: 310  337
           
Sbjct: 220  116

[Close]

BLAST of WMU16581 vs. TrEMBL
Match: V4N7W0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014961mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.5e-21
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKK ECYADIE        +SS   KENCALRC+SP CY+L+Y SDPLEEGEKDL RSQE
Sbjct: 63  QKKSECYADIESGLWGWRCKSSPIAKENCALRCVSPACYELIYESDPLEEGEKDLVRSQE 122

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYC+YK S+GE   GV
Sbjct: 123 YKYCLYKSSLGESLDGV 139

Query: 250  309
           
Sbjct: 183  139

Query: 310  337
           
Sbjct: 243  139

[Close]

BLAST of WMU16581 vs. NCBI nr
Match: gi|449432364|ref|XP_004133969.1| (PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKKQECYADIE        RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE
Sbjct: 49  QKKQECYADIESGLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 108

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYCIYKLSMGE   G+
Sbjct: 109 YKYCIYKLSMGESLEGI 125

Query: 250  309
           
Sbjct: 169  125

Query: 310  337
           
Sbjct: 229  125

[Close]

BLAST of WMU16581 vs. NCBI nr
Match: gi|659075702|ref|XP_008438284.1| (PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 65/77 (84.42%), Postives = 66/77 (85.71%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKKQECYADIE        RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE
Sbjct: 49  QKKQECYADIESGLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 108

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYCIYKLSMGE   G+
Sbjct: 109 YKYCIYKLSMGESLEGI 125

Query: 250  309
           
Sbjct: 169  125

Query: 310  337
           
Sbjct: 229  125

[Close]

BLAST of WMU16581 vs. NCBI nr
Match: gi|729423422|ref|XP_010558685.1| (PREDICTED: uncharacterized protein LOC104827245 [Tarenaya hassleriana])

HSP 1 Score: 116.7 bits (291), Expect = 4.0e-23
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 130 QKKQECYADIE--------RSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKK ECYADIE        +SS+T KENCALRCLSP CY+L+Y SDPLEEGEKDL RSQE
Sbjct: 77  QKKNECYADIESGLWGWQCKSSSTAKENCALRCLSPPCYELIYESDPLEEGEKDLIRSQE 136

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYC+YKLS+GE   GV
Sbjct: 137 YKYCMYKLSLGESIDGV 153

Query: 250  309
           
Sbjct: 197  153

Query: 310  337
           
Sbjct: 257  153

[Close]

BLAST of WMU16581 vs. NCBI nr
Match: gi|944227495|gb|KQK91899.1| (hypothetical protein SETIT_037990mg [Setaria italica])

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 130 QKKQECYADIERSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYKL 189
           QKK+ CY D+E+SS TEKENC LRCLSP CYDL+YG DPLEEGE D  RSQEYKYC++K 
Sbjct: 51  QKKEACYTDVEKSSPTEKENCVLRCLSPECYDLIYGGDPLEEGELDYVRSQEYKYCMHKS 110

Query: 190 SMGEESGGV 249
           S+GE   GV
Sbjct: 111 SLGESLDGV 119

Query: 250  309
           
Sbjct: 171  119

Query: 310  337
           
Sbjct: 231  119

[Close]

BLAST of WMU16581 vs. NCBI nr
Match: gi|565464032|ref|XP_006290015.1| (hypothetical protein CARUB_v10003646mg [Capsella rubella])

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-22
Identity = 54/77 (70.13%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 130 QKKQECYADIER--------SSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQE 189
           QKK ECYADIE         SS   KENCALRCLSP CY+L+Y SDPLEEGEKDL RSQE
Sbjct: 41  QKKNECYADIESGLWGWQCISSAIAKENCALRCLSPVCYELIYESDPLEEGEKDLIRSQE 100

Query: 190 YKYCIYKLSMGEESGGV 249
           YKYC+YKLS+GE   GV
Sbjct: 101 YKYCMYKLSLGESLDGV 117

Query: 250  309
           
Sbjct: 161  117

Query: 310  337
           
Sbjct: 221  117

The following BLAST results are available for this feature:

BLAST of WMU16581 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17610.1	8.6e-24	67.53	unknown protein	[more]

BLAST of WMU16581 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A0_CUCSA	4.9e-28	84.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1	[more]
A0A0A0L9A0_CUCSA	5.9e-05	65.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129480 PE=4 SV=1	[more]
R0HGJ0_9BRAS	1.2e-21	70.13	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003646mg PE=4 SV=1	[more]
D7LX25_ARALL	4.5e-21	68.83	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
V4N7W0_EUTSA	4.5e-21	67.53	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014961mg PE=4 SV=1	[more]

BLAST of WMU16581 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432364\|ref\|XP_004133969.1\|	1.9e-28	84.42	PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus]	[more]
gi\|659075702\|ref\|XP_008438284.1\|	1.9e-28	84.42	PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo]	[more]
gi\|729423422\|ref\|XP_010558685.1\|	4.0e-23	71.43	PREDICTED: uncharacterized protein LOC104827245 [Tarenaya hassleriana]	[more]
gi\|944227495\|gb\|KQK91899.1\|	1.2e-22	71.01	hypothetical protein SETIT_037990mg [Setaria italica]	[more]
gi\|565464032\|ref\|XP_006290015.1\|	4.4e-22	70.13	hypothetical protein CARUB_v10003646mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021384	Cla021384	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0006757	S1_0006757	EST
S2_0026783	S2_0026783	EST
S3_0112948	S3_0112948	EST
S3_0172998	S3_0172998	EST
S4_0076689	S4_0076689	EST
S4_0111950	S4_0111950	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35455	FAMILY NOT NAMED	coord: 45..120 score: 1.2