Carg14896 (gene) Silver-seed gourd

Overview
NameCarg14896
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein OS-9 like
LocationCucurbita_argyrosperma_scaffold_079 : 550932 .. 551708 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCTACGAAGGCACTCTTGAAATCTGTGGCTTCATAGTTCTGAAATCGGAGTGAGCTAGAGAGGGAATCAATTGGAGGGCATCCGAATTTGATCCAAACAGAGATGGAAATCAACAATTCTCCGAGAAATTCAAATCCGCTCAACACAGTGAGATTCTTGTTGGTTCTAGGGTTCATTTTCTCATTGCTATCTACCCATACGGTTCTTGCCAAATCTCGCCGTCCGGTCACTGTAAGTTTTGTTCGTCTTCTCCGCTCGTATTTGTCTTTATCCTCACTCGATTATGCTGAACCGTGTCAATTATTCAGGATGCTGAAACCAGGCAAAAGAAGCAGGACTGTTACGCCGATATCGAGAGGTGAGTGTTTCTTTCAAGCTATTTTTAGTTTTTTTTTTTTTTTTTGGATGTAGTTGGAAAATGATCCGAGTAACTTTGAAATGTGATTTCTCCTTTTTTTCATCCTTCCTGCTTTTGATTTGATTCGTTTCGATAATGTGTTGAAATTTTGCAGCGGATTGTGGGGTTGGCAATGCAAATCTTCAGCTACCGAAAAGGAAAATTGTGCCCTGCGATGCCTTTCTCCTACTTGTTATGATATAGTTTATGGCAGCGATCCGGTGAGACAATTTTCTTCTTATTGTCACGTGCTTGTAATTCTCTGGCTGTTCATCTTTAATTGCTAAGTCTATCGTTGGATTTGTGTAATGTAGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTACAAGTATTGTATCTATAAGTAA

mRNA sequence

GTTTCTACGAAGGCACTCTTGAAATCTGTGGCTTCATAGTTCTGAAATCGGAGTGAGCTAGAGAGGGAATCAATTGGAGGGCATCCGAATTTGATCCAAACAGAGATGGAAATCAACAATTCTCCGAGAAATTCAAATCCGCTCAACACAGTGAGATTCTTGTTGGTTCTAGGGTTCATTTTCTCATTGCTATCTACCCATACGGTTCTTGCCAAATCTCGCCGTCCGGTCACTGATGCTGAAACCAGGCAAAAGAAGCAGGACTGTTACGCCGATATCGAGAGCGGATTGTGGGGTTGGCAATGCAAATCTTCAGCTACCGAAAAGGAAAATTGTGCCCTGCGATGCCTTTCTCCTACTTGTTATGATATAGTTTATGGCAGCGATCCGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTACAAGTATTGTATCTATAAGTAA

Coding sequence (CDS)

ATGGAAATCAACAATTCTCCGAGAAATTCAAATCCGCTCAACACAGTGAGATTCTTGTTGGTTCTAGGGTTCATTTTCTCATTGCTATCTACCCATACGGTTCTTGCCAAATCTCGCCGTCCGGTCACTGATGCTGAAACCAGGCAAAAGAAGCAGGACTGTTACGCCGATATCGAGAGCGGATTGTGGGGTTGGCAATGCAAATCTTCAGCTACCGAAAAGGAAAATTGTGCCCTGCGATGCCTTTCTCCTACTTGTTATGATATAGTTTATGGCAGCGATCCGCTCGAGGAAGGAGAGAAGGACCTTGCTAGGAGTCAAGAGTACAAGTATTGTATCTATAAGTAA

Protein sequence

MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIESGLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK
Homology
[Close]
BLAST of Carg14896 vs. NCBI nr
Match: XP_022924279.1 (uncharacterized protein LOC111431806 [Cucurbita moschata])

HSP 1 Score: 243.0 bits (619), Expect = 4.8e-61
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           MEINNSPRNSNPLNTVRFLL+LGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES
Sbjct: 1   MEINNSPRNSNPLNTVRFLLILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. NCBI nr
Match: XP_022980443.1 (uncharacterized protein LOC111479810 [Cucurbita maxima])

HSP 1 Score: 236.5 bits (602), Expect = 4.5e-59
Identity = 111/115 (96.52%), Postives = 113/115 (98.26%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           MEINN+ RNSNPLNTVR LL+LGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES
Sbjct: 1   MEINNAQRNSNPLNTVRLLLILGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. NCBI nr
Match: XP_023526484.1 (uncharacterized protein LOC111789973 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.8 bits (595), Expect = 2.9e-58
Identity = 109/115 (94.78%), Postives = 111/115 (96.52%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           MEINNS RN NP NTVR LL+LGF+FSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES
Sbjct: 1   MEINNSQRNPNPFNTVRLLLILGFVFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. NCBI nr
Match: XP_008438284.1 (PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 2.2e-53
Identity = 99/115 (86.09%), Postives = 110/115 (95.65%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           ME+NNS +NS  LNT++ L++LGFIFSLL+THTV+AKSRRPVTDAETRQKKQ+CYADIES
Sbjct: 1   MEVNNSSKNSKLLNTLKPLILLGFIFSLLTTHTVIAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQC+SS TEKENCALRCLSPTCYD+VYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. NCBI nr
Match: XP_004133969.1 (PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus] >KGN56691.1 hypothetical protein Csa_3G129480 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 2.8e-53
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           ME+NNS RNS  LNT++ L++LG IFSLL+THTVLAKSRRPVTDAETRQKKQ+CYADIES
Sbjct: 1   MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQC+SS TEKENCALRCLSPTCYD+VYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. TAIR10
Match: AT5G17610.1 (unknown protein)

HSP 1 Score: 150.2 bits (378), Expect = 7.7e-37
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 0 

Query: 18  FLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIESGLWGWQCKSSATEKENC 77
           F+ +L  + S+     V +KS RP++D E RQKK +CY DIESGLWGWQCKSSA  KENC
Sbjct: 10  FVCLLLLLLSMCFVPCVFSKSPRPISDVEIRQKKSECYGDIESGLWGWQCKSSAIAKENC 69

Query: 78  ALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           ALRCLSP CY ++Y SDPLEEGEKDL RSQEYKYC+YK
Sbjct: 70  ALRCLSPVCYQLIYESDPLEEGEKDLIRSQEYKYCMYK 107

[Close]
BLAST of Carg14896 vs. TrEMBL
Match: tr|A0A1S3AW07|A0A1S3AW07_CUCME (uncharacterized protein LOC103483444 OS=Cucumis melo OX=3656 GN=LOC103483444 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.4e-53
Identity = 99/115 (86.09%), Postives = 110/115 (95.65%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           ME+NNS +NS  LNT++ L++LGFIFSLL+THTV+AKSRRPVTDAETRQKKQ+CYADIES
Sbjct: 1   MEVNNSSKNSKLLNTLKPLILLGFIFSLLTTHTVIAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQC+SS TEKENCALRCLSPTCYD+VYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. TrEMBL
Match: tr|A0A0A0L9A0|A0A0A0L9A0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129480 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.9e-53
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0 

Query: 1   MEINNSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIES 60
           ME+NNS RNS  LNT++ L++LG IFSLL+THTVLAKSRRPVTDAETRQKKQ+CYADIES
Sbjct: 1   MEVNNSSRNSKLLNTLKPLILLGLIFSLLTTHTVLAKSRRPVTDAETRQKKQECYADIES 60

Query: 61  GLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           GLWGWQC+SS TEKENCALRCLSPTCYD+VYGSDPLEEGEKDLARSQEYKYCIYK
Sbjct: 61  GLWGWQCRSSTTEKENCALRCLSPTCYDLVYGSDPLEEGEKDLARSQEYKYCIYK 115

[Close]
BLAST of Carg14896 vs. TrEMBL
Match: tr|A0A2P6SCW9|A0A2P6SCW9_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0337311 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-34
Identity = 73/111 (65.77%), Postives = 87/111 (78.38%), Query Frame = 0 

Query: 5   NSPRNSNPLNTVRFLLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIESGLWG 64
           NS   S+PL  ++ LLVL  +FS      VLAKSRRP++D ETRQKK  CYADI+SGLWG
Sbjct: 5   NSSCCSSPLR-IQILLVLSLLFS----PAVLAKSRRPISDIETRQKKTQCYADIDSGLWG 64

Query: 65  WQCKSSATEKENCALRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           WQCKS+   KENC L+CLSPTCY++VY SDPLEEGEKDL R QE+KYC++K
Sbjct: 65  WQCKSTMIAKENCVLKCLSPTCYELVYESDPLEEGEKDLLRGQEFKYCMHK 110

[Close]
BLAST of Carg14896 vs. TrEMBL
Match: tr|A0A2P4NBN2|A0A2P4NBN2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_08549 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.5e-34
Identity = 63/80 (78.75%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 36  AKSRRPVTDAETRQKKQDCYADIESGLWGWQCKSSATEKENCALRCLSPTCYDIVYGSDP 95
           AKSRRP++DAETRQ+K +CYADIESG+WGWQCKSS  +KENCAL+CLSP+CY++VYGSDP
Sbjct: 37  AKSRRPISDAETRQRKNECYADIESGMWGWQCKSSVVDKENCALKCLSPSCYELVYGSDP 96

Query: 96  LEEGEKDLARSQEYKYCIYK 116
           LEEGEKDL RSQE+KYC++K
Sbjct: 97  LEEGEKDLIRSQEFKYCMHK 116

[Close]
BLAST of Carg14896 vs. TrEMBL
Match: tr|R0HGJ0|R0HGJ0_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10003646mg PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.7e-34
Identity = 72/97 (74.23%), Postives = 80/97 (82.47%), Query Frame = 0 

Query: 19  LLVLGFIFSLLSTHTVLAKSRRPVTDAETRQKKQDCYADIESGLWGWQCKSSATEKENCA 78
           LL+L   F LLS   VLAKS RP++D E RQKK +CYADIESGLWGWQC SSA  KENCA
Sbjct: 13  LLLLILSFCLLS--CVLAKSPRPISDVEIRQKKNECYADIESGLWGWQCISSAIAKENCA 72

Query: 79  LRCLSPTCYDIVYGSDPLEEGEKDLARSQEYKYCIYK 116
           LRCLSP CY+++Y SDPLEEGEKDL RSQEYKYC+YK
Sbjct: 73  LRCLSPVCYELIYESDPLEEGEKDLIRSQEYKYCMYK 107

The following BLAST results are available for this feature:
BLAST of Carg14896 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022924279.14.8e-6199.13uncharacterized protein LOC111431806 [Cucurbita moschata][more]
XP_022980443.14.5e-5996.52uncharacterized protein LOC111479810 [Cucurbita maxima][more]
XP_023526484.12.9e-5894.78uncharacterized protein LOC111789973 [Cucurbita pepo subsp. pepo][more]
XP_008438284.12.2e-5386.09PREDICTED: uncharacterized protein LOC103483444 [Cucumis melo][more]
XP_004133969.12.8e-5386.96PREDICTED: uncharacterized protein LOC101207062 [Cucumis sativus] >KGN56691.1 hy... [more]
BLAST of Carg14896 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17610.17.7e-3767.35unknown protein[more]
BLAST of Carg14896 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14896 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AW07|A0A1S3AW07_CUCME1.4e-5386.09uncharacterized protein LOC103483444 OS=Cucumis melo OX=3656 GN=LOC103483444 PE=... [more]
tr|A0A0A0L9A0|A0A0A0L9A0_CUCSA1.9e-5386.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129480 PE=4 SV=1[more]
tr|A0A2P6SCW9|A0A2P6SCW9_ROSCH1.5e-3465.77Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0337311 PE=4... [more]
tr|A0A2P4NBN2|A0A2P4NBN2_QUESU2.5e-3478.75Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_08549 PE=4 SV=1[more]
tr|R0HGJ0|R0HGJ0_9BRAS5.7e-3474.23Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10003646mg PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR031985DUF4787
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14896-RACarg14896-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031985Protein of unknown function DUF4787PFAMPF16029DUF4787coord: 44..112
e-value: 3.2E-22
score: 78.2
IPR031985Protein of unknown function DUF4787PANTHERPTHR35455FAMILY NOT NAMEDcoord: 18..115