Cla021186 (gene) Watermelon (97103) v1

Overview
NameCla021186
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 1096399 .. 1096683 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATTTCGTTTCCTTGGGAAAGAAAGAGGGAAAATATGGTATTCCATCTCATCGTCATCGTAATGTGCAATGGAACATATCTTGGAAACAGAAGAACGGAAATGATGAAAAAGAAGAAGAAGACAATCACCTTAGAGGCAAGTCGGTGACCGGAGACCTGCCGGAATTCCGATCATCCGATGAGAAAAGATTTATGGAAAATGAGAGAGTGAGACAGAGGAGGAAGAAGAGTGAGTCCTTTGACGGTGGCGGAAAATTGGCTGCAAGGCCTTTCGACTGA

mRNA sequence

ATGGAGAATTTCGTTTCCTTGGGAAAGAAAGAGGGAAAATATGGTATTCCATCTCATCGTCATCGTAATGTGCAATGGAACATATCTTGGAAACAGAAGAACGGAAATGATGAAAAAGAAGAAGAAGACAATCACCTTAGAGGCAAGTCGGTGACCGGAGACCTGCCGGAATTCCGATCATCCGATGAGAAAAGATTTATGGAAAATGAGAGAGTGAGACAGAGGAGGAAGAAGAGTGAGTCCTTTGACGGTGGCGGAAAATTGGCTGCAAGGCCTTTCGACTGA

Coding sequence (CDS)

ATGGAGAATTTCGTTTCCTTGGGAAAGAAAGAGGGAAAATATGGTATTCCATCTCATCGTCATCGTAATGTGCAATGGAACATATCTTGGAAACAGAAGAACGGAAATGATGAAAAAGAAGAAGAAGACAATCACCTTAGAGGCAAGTCGGTGACCGGAGACCTGCCGGAATTCCGATCATCCGATGAGAAAAGATTTATGGAAAATGAGAGAGTGAGACAGAGGAGGAAGAAGAGTGAGTCCTTTGACGGTGGCGGAAAATTGGCTGCAAGGCCTTTCGACTGA

Protein sequence

MENFVSLGKKEGKYGIPSHRHRNVQWNISWKQKNGNDEKEEEDNHLRGKSVTGDLPEFRSSDEKRFMENERVRQRRKKSESFDGGGKLAARPFD
Homology
[Close]
BLAST of Cla021186 vs. TrEMBL
Match: A0A0A0L794_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120360 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.4e-10
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 38 EKEEEDNHLRGKSVTGDLPEFRSSDEKRFMENERVRQRRK-KSESFDGGGKL 89
          E+E+++ HLRG+ VT D PEFRSSDEK+ MEN RVRQRRK  SES DGGG L
Sbjct: 5  EEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNL 56

[Close]
BLAST of Cla021186 vs. NCBI nr
Match: gi|700201324|gb|KGN56457.1| (hypothetical protein Csa_3G120360 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 38 EKEEEDNHLRGKSVTGDLPEFRSSDEKRFMENERVRQRRK-KSESFDGGGKL 89
          E+E+++ HLRG+ VT D PEFRSSDEK+ MEN RVRQRRK  SES DGGG L
Sbjct: 5  EEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNL 56

The following BLAST results are available for this feature:
BLAST of Cla021186 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L794_CUCSA7.4e-1069.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120360 PE=4 SV=1[more]
BLAST of Cla021186 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201324|gb|KGN56457.1|1.1e-0969.23hypothetical protein Csa_3G120360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021186Cla021186.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla021186Cla97C05G081340Watermelon (97103) v2wmwmbB206
Cla021186Csa3G120360Cucumber (Chinese Long) v2cuwmB233
Cla021186MELO3C006057Melon (DHL92) v3.5.1mewmB461
Cla021186CSPI03G08240Wild cucumber (PI 183967)cpiwmB231
Cla021186CsGy3G008370Cucumber (Gy14) v2cgybwmB217
Cla021186MELO3C006057.2Melon (DHL92) v3.6.1medwmB447
Cla021186CsaV3_3G008380Cucumber (Chinese Long) v3cucwmB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla021186Melon (DHL92) v3.6.1medwmB018
Cla021186Melon (DHL92) v3.6.1medwmB097
Cla021186Melon (DHL92) v3.6.1medwmB511
Cla021186Silver-seed gourdcarwmB0487
Cla021186Silver-seed gourdcarwmB0600
Cla021186Silver-seed gourdcarwmB0992
Cla021186Cucumber (Chinese Long) v3cucwmB338
Cla021186Cucumber (Chinese Long) v3cucwmB423
Cla021186Watermelon (97103) v2wmwmbB187
Cla021186Watermelon (97103) v2wmwmbB212
Cla021186Watermelon (97103) v2wmwmbB216
Cla021186Wax gourdwgowmB071
Cla021186Wax gourdwgowmB212
Cla021186Wax gourdwgowmB221
Cla021186Watermelon (97103) v1wmwmB118
Cla021186Watermelon (97103) v1wmwmB119
Cla021186Cucumber (Gy14) v1cgywmB149
Cla021186Cucumber (Gy14) v1cgywmB231
Cla021186Cucumber (Gy14) v1cgywmB398
Cla021186Cucumber (Gy14) v1cgywmB479
Cla021186Cucurbita maxima (Rimu)cmawmB000
Cla021186Cucurbita maxima (Rimu)cmawmB242
Cla021186Cucurbita maxima (Rimu)cmawmB801
Cla021186Cucurbita moschata (Rifu)cmowmB231
Cla021186Cucurbita moschata (Rifu)cmowmB370
Cla021186Cucurbita moschata (Rifu)cmowmB793
Cla021186Melon (DHL92) v3.5.1mewmB022
Cla021186Melon (DHL92) v3.5.1mewmB099
Cla021186Melon (DHL92) v3.5.1mewmB470
Cla021186Melon (DHL92) v3.5.1mewmB526
Cla021186Watermelon (Charleston Gray)wcgwmB130
Cla021186Watermelon (Charleston Gray)wcgwmB286
Cla021186Watermelon (Charleston Gray)wcgwmB291
Cla021186Watermelon (Charleston Gray)wcgwmB329
Cla021186Cucumber (Chinese Long) v2cuwmB325
Cla021186Cucumber (Chinese Long) v2cuwmB397
Cla021186Cucurbita pepo (Zucchini)cpewmB613
Cla021186Cucurbita pepo (Zucchini)cpewmB704
Cla021186Cucurbita pepo (Zucchini)cpewmB845
Cla021186Bottle gourd (USVL1VR-Ls)lsiwmB018
Cla021186Bottle gourd (USVL1VR-Ls)lsiwmB026
Cla021186Bottle gourd (USVL1VR-Ls)lsiwmB365
Cla021186Bottle gourd (USVL1VR-Ls)lsiwmB372
Cla021186Cucumber (Gy14) v2cgybwmB300
Cla021186Cucumber (Gy14) v2cgybwmB373
Cla021186Cucumber (Gy14) v2cgybwmB467