Csa3G120360 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G120360
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 6946387 .. 6946637 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTGGAACTGAACCGAACATATCTCTGGGAATCAGGAGAACGGAAATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTCACATAA

mRNA sequence

ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTCACATAA

Coding sequence (CDS)

ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTCACATAA

Protein sequence

MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQCLSIDCVT*
Homology
[Close]
BLAST of Csa3G120360 vs. TrEMBL
Match: A0A0A0L794_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120360 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.2e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC
Sbjct: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60

Query: 61 LSIDCVT 68
          LSIDCVT
Sbjct: 61 LSIDCVT 67

[Close]
BLAST of Csa3G120360 vs. NCBI nr
Match: gi|700201324|gb|KGN56457.1| (hypothetical protein Csa_3G120360 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC
Sbjct: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60

Query: 61 LSIDCVT 68
          LSIDCVT
Sbjct: 61 LSIDCVT 67

The following BLAST results are available for this feature:
BLAST of Csa3G120360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L794_CUCSA3.2e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120360 PE=4 SV=1[more]
BLAST of Csa3G120360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201324|gb|KGN56457.1|4.6e-31100.00hypothetical protein Csa_3G120360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU122599cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G120360.1Csa3G120360.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU122599CU122599transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G120360Cla021186Watermelon (97103) v1cuwmB233
Csa3G120360Cla97C05G081340Watermelon (97103) v2cuwmbB204
Csa3G120360CSPI03G08240Wild cucumber (PI 183967)cpicuB120
Csa3G120360CsGy3G008370Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G120360Melon (DHL92) v3.6.1cumedB157
Csa3G120360Melon (DHL92) v3.6.1cumedB169
Csa3G120360Melon (DHL92) v3.6.1cumedB223
Csa3G120360Melon (DHL92) v3.6.1cumedB245
Csa3G120360Melon (DHL92) v3.6.1cumedB246
Csa3G120360Silver-seed gourdcarcuB0522
Csa3G120360Silver-seed gourdcarcuB0629
Csa3G120360Silver-seed gourdcarcuB1007
Csa3G120360Watermelon (97103) v2cuwmbB173
Csa3G120360Watermelon (97103) v2cuwmbB224
Csa3G120360Watermelon (97103) v2cuwmbB229
Csa3G120360Wax gourdcuwgoB261
Csa3G120360Wax gourdcuwgoB284
Csa3G120360Wax gourdcuwgoB296
Csa3G120360Cucumber (Chinese Long) v2cucuB093
Csa3G120360Cucumber (Chinese Long) v2cucuB095
Csa3G120360Cucumber (Gy14) v1cgycuB128
Csa3G120360Cucumber (Gy14) v1cgycuB191
Csa3G120360Cucumber (Gy14) v1cgycuB307
Csa3G120360Cucumber (Gy14) v1cgycuB366
Csa3G120360Cucurbita maxima (Rimu)cmacuB001
Csa3G120360Cucurbita maxima (Rimu)cmacuB253
Csa3G120360Cucurbita maxima (Rimu)cmacuB285
Csa3G120360Cucurbita maxima (Rimu)cmacuB829
Csa3G120360Cucurbita moschata (Rifu)cmocuB239
Csa3G120360Cucurbita moschata (Rifu)cmocuB271
Csa3G120360Cucurbita moschata (Rifu)cmocuB593
Csa3G120360Cucurbita moschata (Rifu)cmocuB806
Csa3G120360Melon (DHL92) v3.5.1cumeB175
Csa3G120360Melon (DHL92) v3.5.1cumeB183
Csa3G120360Melon (DHL92) v3.5.1cumeB236
Csa3G120360Melon (DHL92) v3.5.1cumeB254
Csa3G120360Melon (DHL92) v3.5.1cumeB257
Csa3G120360Watermelon (Charleston Gray)cuwcgB204
Csa3G120360Watermelon (Charleston Gray)cuwcgB222
Csa3G120360Watermelon (Charleston Gray)cuwcgB238
Csa3G120360Watermelon (Charleston Gray)cuwcgB243
Csa3G120360Watermelon (97103) v1cuwmB258
Csa3G120360Watermelon (97103) v1cuwmB252
Csa3G120360Cucurbita pepo (Zucchini)cpecuB038
Csa3G120360Cucurbita pepo (Zucchini)cpecuB609
Csa3G120360Cucurbita pepo (Zucchini)cpecuB720
Csa3G120360Cucurbita pepo (Zucchini)cpecuB862
Csa3G120360Bottle gourd (USVL1VR-Ls)culsiB151
Csa3G120360Bottle gourd (USVL1VR-Ls)culsiB158
Csa3G120360Bottle gourd (USVL1VR-Ls)culsiB209
Csa3G120360Cucumber (Gy14) v2cgybcuB163
Csa3G120360Cucumber (Gy14) v2cgybcuB206
Csa3G120360Cucumber (Gy14) v2cgybcuB267