CsGy3G008370 (gene) Cucumber (Gy14) v2

Overview
NameCsGy3G008370
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr3 : 6975713 .. 6975916 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTCACATAA

mRNA sequence

ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTCACATAA

Coding sequence (CDS)

ATGATCAAGAAAGAAGAAGAAGACGATGAGTATCACCTTAGAGGCGAACCGGTGACTGAAGACCCGCCGGAATTCCGATCATCCGATGAGAAGAAATTGATGGAAAATGCGAGAGTGAGACAGAGGAGGAAGACGAGTAGTGAGTCTTGTGACGGTGGCGGAAATTTGGGTATGCAATGCCTTTCGATTGATTGCGTCACATAA

Protein sequence

MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQCLSIDCVT
Homology
[Close]
BLAST of CsGy3G008370 vs. NCBI nr
Match: KGN56457.1 (hypothetical protein Csa_3G120360 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC
Sbjct: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60

Query: 61 LSIDCVT 68
          LSIDCVT
Sbjct: 61 LSIDCVT 67

[Close]
BLAST of CsGy3G008370 vs. TrEMBL
Match: tr|A0A0A0L794|A0A0A0L794_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120360 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60
          MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC
Sbjct: 1  MIKKEEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNLGMQC 60

Query: 61 LSIDCVT 68
          LSIDCVT
Sbjct: 61 LSIDCVT 67

The following BLAST results are available for this feature:
BLAST of CsGy3G008370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56457.14.8e-29100.00hypothetical protein Csa_3G120360 [Cucumis sativus][more]
BLAST of CsGy3G008370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy3G008370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy3G008370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L794|A0A0A0L794_CUCSA3.2e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120360 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G008370.1CsGy3G008370.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy3G008370Cla021186Watermelon (97103) v1cgybwmB217
CsGy3G008370Csa3G120360Cucumber (Chinese Long) v2cgybcuB109
CsGy3G008370CSPI03G08240Wild cucumber (PI 183967)cgybcpiB110
CsGy3G008370CsaV3_3G008380Cucumber (Chinese Long) v3cgybcucB117
CsGy3G008370Cla97C05G081340Watermelon (97103) v2cgybwmbB196
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy3G008370Cucumber (Chinese Long) v3cgybcucB129
CsGy3G008370Cucumber (Chinese Long) v3cgybcucB130
CsGy3G008370Cucumber (Chinese Long) v3cgybcucB152
CsGy3G008370Watermelon (97103) v2cgybwmbB166
CsGy3G008370Watermelon (97103) v2cgybwmbB214
CsGy3G008370Watermelon (97103) v2cgybwmbB220
CsGy3G008370Wax gourdcgybwgoB249
CsGy3G008370Wax gourdcgybwgoB272
CsGy3G008370Wax gourdcgybwgoB282
CsGy3G008370Cucumber (Gy14) v2cgybcgybB084
CsGy3G008370Cucumber (Gy14) v2cgybcgybB085
CsGy3G008370Cucumber (Gy14) v2cgybcgybB112
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB273
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB355
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB318
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB336
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB338
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB401
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB441
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB458
CsGy3G008370Cucurbita maxima (Rimu)cgybcmaB464
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB307
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB309
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB290
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB372
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB401
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB425
CsGy3G008370Cucurbita moschata (Rifu)cgybcmoB430
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB286
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB321
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB324
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB358
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB359
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB406
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB428
CsGy3G008370Cucurbita pepo (Zucchini)cgybcpeB454
CsGy3G008370Cucumber (Chinese Long) v2cgybcuB124
CsGy3G008370Cucumber (Chinese Long) v2cgybcuB125
CsGy3G008370Bottle gourd (USVL1VR-Ls)cgyblsiB137
CsGy3G008370Bottle gourd (USVL1VR-Ls)cgyblsiB144
CsGy3G008370Bottle gourd (USVL1VR-Ls)cgyblsiB196
CsGy3G008370Melon (DHL92) v3.5.1cgybmeB142
CsGy3G008370Melon (DHL92) v3.5.1cgybmeB153
CsGy3G008370Melon (DHL92) v3.5.1cgybmeB200
CsGy3G008370Melon (DHL92) v3.5.1cgybmeB218
CsGy3G008370Melon (DHL92) v3.5.1cgybmeB220
CsGy3G008370Melon (DHL92) v3.6.1cgybmedB139
CsGy3G008370Melon (DHL92) v3.6.1cgybmedB152
CsGy3G008370Melon (DHL92) v3.6.1cgybmedB201
CsGy3G008370Melon (DHL92) v3.6.1cgybmedB222
CsGy3G008370Watermelon (Charleston Gray)cgybwcgB189
CsGy3G008370Watermelon (Charleston Gray)cgybwcgB203
CsGy3G008370Watermelon (Charleston Gray)cgybwcgB221
CsGy3G008370Watermelon (Charleston Gray)cgybwcgB228
CsGy3G008370Watermelon (97103) v1cgybwmB238
CsGy3G008370Watermelon (97103) v1cgybwmB243
CsGy3G008370Wild cucumber (PI 183967)cgybcpiB125
CsGy3G008370Wild cucumber (PI 183967)cgybcpiB126
CsGy3G008370Wild cucumber (PI 183967)cgybcpiB150
CsGy3G008370Silver-seed gourdcarcgybB0499
CsGy3G008370Silver-seed gourdcarcgybB0601
CsGy3G008370Silver-seed gourdcarcgybB0980