Cla021186.1 (mRNA) Watermelon (97103) v1

Overview
NameCla021186
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 1096399 .. 1096683 (-)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATTTCGTTTCCTTGGGAAAGAAAGAGGGAAAATATGGTATTCCATCTCATCGTCATCGTAATGTGCAATGGAACATATCTTGGAAACAGAAGAACGGAAATGATGAAAAAGAAGAAGAAGACAATCACCTTAGAGGCAAGTCGGTGACCGGAGACCTGCCGGAATTCCGATCATCCGATGAGAAAAGATTTATGGAAAATGAGAGAGTGAGACAGAGGAGGAAGAAGAGTGAGTCCTTTGACGGTGGCGGAAAATTGGCTGCAAGGCCTTTCGACTGA

mRNA sequence

ATGGAGAATTTCGTTTCCTTGGGAAAGAAAGAGGGAAAATATGGTATTCCATCTCATCGTCATCGTAATGTGCAATGGAACATATCTTGGAAACAGAAGAACGGAAATGATGAAAAAGAAGAAGAAGACAATCACCTTAGAGGCAAGTCGGTGACCGGAGACCTGCCGGAATTCCGATCATCCGATGAGAAAAGATTTATGGAAAATGAGAGAGTGAGACAGAGGAGGAAGAAGAGTGAGTCCTTTGACGGTGGCGGAAAATTGGCTGCAAGGCCTTTCGACTGA

Coding sequence (CDS)

ATGGAGAATTTCGTTTCCTTGGGAAAGAAAGAGGGAAAATATGGTATTCCATCTCATCGTCATCGTAATGTGCAATGGAACATATCTTGGAAACAGAAGAACGGAAATGATGAAAAAGAAGAAGAAGACAATCACCTTAGAGGCAAGTCGGTGACCGGAGACCTGCCGGAATTCCGATCATCCGATGAGAAAAGATTTATGGAAAATGAGAGAGTGAGACAGAGGAGGAAGAAGAGTGAGTCCTTTGACGGTGGCGGAAAATTGGCTGCAAGGCCTTTCGACTGA

Protein sequence

MENFVSLGKKEGKYGIPSHRHRNVQWNISWKQKNGNDEKEEEDNHLRGKSVTGDLPEFRSSDEKRFMENERVRQRRKKSESFDGGGKLAARPFD
Homology
[Close]
BLAST of Cla021186 vs. TrEMBL
Match: A0A0A0L794_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120360 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.4e-10
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 38 EKEEEDNHLRGKSVTGDLPEFRSSDEKRFMENERVRQRRK-KSESFDGGGKL 89
          E+E+++ HLRG+ VT D PEFRSSDEK+ MEN RVRQRRK  SES DGGG L
Sbjct: 5  EEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNL 56

[Close]
BLAST of Cla021186 vs. NCBI nr
Match: gi|700201324|gb|KGN56457.1| (hypothetical protein Csa_3G120360 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 

Query: 38 EKEEEDNHLRGKSVTGDLPEFRSSDEKRFMENERVRQRRK-KSESFDGGGKL 89
          E+E+++ HLRG+ VT D PEFRSSDEK+ MEN RVRQRRK  SES DGGG L
Sbjct: 5  EEEDDEYHLRGEPVTEDPPEFRSSDEKKLMENARVRQRRKTSSESCDGGGNL 56

The following BLAST results are available for this feature:
BLAST of Cla021186 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L794_CUCSA7.4e-1069.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G120360 PE=4 SV=1[more]
BLAST of Cla021186 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201324|gb|KGN56457.1|1.1e-0969.23hypothetical protein Csa_3G120360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla021186Cla021186gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla021186Cla021186.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla021186.1.cds1Cla021186.1.cds1CDS