Cla018909 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla018909
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pollen preferential protein (AHRD V1 ***- Q43713_LILLO)
Location	Chr6 : 23416044 .. 23416499 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCGGAAGGTCCTCCTCCGATCTCCGGCTATACGTCATAAATCGTCGCTGCAAGACGAGAAAATCGATGCATCGCGAGAGAGACGGCAGTTCGCGGAGGTAGCCGGTGGTTCAGCGGCGGAATGTACGGCGATTTGCTGCTGTTGTCCATGGACGGTGTTGAATATCGTGATCTTTGCCGTCTACCGGATGCCGGCGGGGCTTTGCCGGAAAGCGATAAACAGGAGAAAACGACACCGTAAAATGAAGAAGAAGTTTCTCATTCAGCAACGAAAGGCGGCCTCTATGGATTTCACGGATGGGTCGGTGGGGCCCGCAATGGAGAGTTTTGAGGCCCACAAAACGACGAATGACGTGGCAGATGTCGAAGATTTGAAGAAGTTAGAAGAGGAAATGTGGGGTCGGTTCAATCAGACCGGGTTTTGGAGAAGTTCTTCTCAAAGACATGAGTAA

mRNA sequence

ATGACTCGGAAGGTCCTCCTCCGATCTCCGGCTATACGTCATAAATCGTCGCTGCAAGACGAGAAAATCGATGCATCGCGAGAGAGACGGCAGTTCGCGGAGGTAGCCGGTGGTTCAGCGGCGGAATGTACGGCGATTTGCTGCTGTTGTCCATGGACGGTGTTGAATATCGTGATCTTTGCCGTCTACCGGATGCCGGCGGGGCTTTGCCGGAAAGCGATAAACAGGAGAAAACGACACCGTAAAATGAAGAAGAAGTTTCTCATTCAGCAACGAAAGGCGGCCTCTATGGATTTCACGGATGGGTCGGTGGGGCCCGCAATGGAGAGTTTTGAGGCCCACAAAACGACGAATGACGTGGCAGATGTCGAAGATTTGAAGAAGTTAGAAGAGGAAATGTGGGGTCGGTTCAATCAGACCGGGTTTTGGAGAAGTTCTTCTCAAAGACATGAGTAA

Coding sequence (CDS)

ATGACTCGGAAGGTCCTCCTCCGATCTCCGGCTATACGTCATAAATCGTCGCTGCAAGACGAGAAAATCGATGCATCGCGAGAGAGACGGCAGTTCGCGGAGGTAGCCGGTGGTTCAGCGGCGGAATGTACGGCGATTTGCTGCTGTTGTCCATGGACGGTGTTGAATATCGTGATCTTTGCCGTCTACCGGATGCCGGCGGGGCTTTGCCGGAAAGCGATAAACAGGAGAAAACGACACCGTAAAATGAAGAAGAAGTTTCTCATTCAGCAACGAAAGGCGGCCTCTATGGATTTCACGGATGGGTCGGTGGGGCCCGCAATGGAGAGTTTTGAGGCCCACAAAACGACGAATGACGTGGCAGATGTCGAAGATTTGAAGAAGTTAGAAGAGGAAATGTGGGGTCGGTTCAATCAGACCGGGTTTTGGAGAAGTTCTTCTCAAAGACATGAGTAA

Protein sequence

MTRKVLLRSPAIRHKSSLQDEKIDASRERRQFAEVAGGSAAECTAICCCCPWTVLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGPAMESFEAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE

Homology

[Close]

BLAST of Cla018909 vs. TrEMBL
Match: A0A0A0LV48_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025240 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.2e-66
Identity = 123/151 (81.46%), Postives = 138/151 (91.39%), Query Frame = 1


Query: 1   MTRKVLLRSPAIRHKSSLQDEKIDASRERRQFAEVAGGSAAECTAICCCCPWTVLNIVIF 60
           MTRKVLLRS AIRH+S L+D KIDA RERRQFAEVAGGSAAECTA+CCCCPWTVLNI+IF
Sbjct: 1   MTRKVLLRSAAIRHRSPLRDGKIDAPRERRQFAEVAGGSAAECTAVCCCCPWTVLNILIF 60

Query: 61  AVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGPAMESFEAHKTTNDV 120
           A+YRMPAGLCRKAINRRKRHR+MK+K+LIQQRKAAS DFTDGSVGP ++ +  H+  NDV
Sbjct: 61  AIYRMPAGLCRKAINRRKRHRRMKRKYLIQQRKAASEDFTDGSVGPIIDGYGTHE-ANDV 120

Query: 121 ADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
           A  EDLKKLE+EMWGRF+QTGFWRSSSQRH+
Sbjct: 121 AAGEDLKKLEDEMWGRFSQTGFWRSSSQRHK 150

[Close]

BLAST of Cla018909 vs. TrEMBL
Match: A0A022PV89_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015404mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 1


Query: 1   MTRKVLLRSPAIRHKSSLQDEKIDAS-----RERRQFAEVAGGSAAECTAICCCCPWTVL 60
           MTR++ +RSPA+  + S   E+ D S     R + + AEVAGG+AAEC A+CCCCP  ++
Sbjct: 1   MTRQMTMRSPALDRRQSPLLERSDYSSRGGARNKVRLAEVAGGTAAECAAVCCCCPCGLV 60

Query: 61  NIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGPAMESFEAHK 120
           N+++ AVY++PAGLCRKA+ RRKRHR++ KK L+ QRK    D  +  + P         
Sbjct: 61  NLIVLAVYKLPAGLCRKAL-RRKRHRRLLKKGLLPQRK-CGCDENEFQIHPVTSPLAMVT 120

Query: 121 TTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
               V+D  ++ +LE+EMW +F   GFWRS SQR E
Sbjct: 121 ALESVSDDSEVIELEKEMWDKFYGAGFWRSPSQRTE 154

[Close]

BLAST of Cla018909 vs. TrEMBL
Match: A0A0V0HW38_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-26
Identity = 65/160 (40.62%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MTRKVLLRSPAI----RHKSSLQDEKIDASR---ERRQFAEVAGGSAAECTAICCCCPWT 60
           MT++++LR+P+     R +  L   +  +SR    + + AEVAGG+AAEC A+CCCCP  
Sbjct: 1   MTKQIVLRAPSSLSIDRRRQPLLSNQDTSSRGGVRKARLAEVAGGTAAECAAVCCCCPCG 60

Query: 61  VLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGP--AMESF 120
           ++N+++ AVY++PAGLCRKA+ R++R R+MKKK L  Q + +S D ++ S+ P     + 
Sbjct: 61  LVNLLVMAVYKLPAGLCRKALRRKRRRRQMKKKIL--QSQCSSCDDSELSIHPIDGATTL 120

Query: 121 EAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
                 N +   +D+  LE+EMW +F   GFWRS SQ+ +
Sbjct: 121 AVVDGGNSLKSDKDVVALEKEMWSKFYGAGFWRSPSQKSD 158

[Close]

BLAST of Cla018909 vs. TrEMBL
Match: M1BXB9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021375 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.9e-26
Identity = 65/160 (40.62%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MTRKVLLRSPAI----RHKSSLQDEKIDASR---ERRQFAEVAGGSAAECTAICCCCPWT 60
           MT++++LR+P+     R +  L   +  +SR    + + AEVAGG+AAEC A+CCCCP  
Sbjct: 1   MTKQIVLRAPSSLSIDRRRQPLLSNQDTSSRGGVRKARLAEVAGGTAAECAAVCCCCPCG 60

Query: 61  VLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGP--AMESF 120
           ++N+++ AVY++PAGLCRKA+ R++R R+MKKK L  Q + +S D ++ S+ P     + 
Sbjct: 61  LVNLLVMAVYKLPAGLCRKALRRKRRRRQMKKKIL--QSQCSSCDDSELSIHPIDGATTL 120

Query: 121 EAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
                 N +   +D+  LE+EMW +F   GFWRS SQ+ +
Sbjct: 121 AVVDGGNSLKSDKDVVALEKEMWSKFYGGGFWRSPSQKSD 158

[Close]

BLAST of Cla018909 vs. TrEMBL
Match: K4ASP5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 1   MTRKVLLRSPAI----RHKSSLQDEKIDASR---ERRQFAEVAGGSAAECTAICCCCPWT 60
           MT++++LR+P+     R +  L   +  +SR    + + AEVAGG+ AEC A+CCCCP  
Sbjct: 1   MTKQIVLRAPSSLSIDRRRQPLLSNQDTSSRGGVRKARLAEVAGGTTAECAAVCCCCPCG 60

Query: 61  VLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVG--PAMESF 120
           ++N+++ A+Y++PAGLCRKA+ R++R R MKKK L  Q + +S D +D S+       + 
Sbjct: 61  LVNLLVMAIYKLPAGLCRKALRRKRRRRLMKKKIL--QSQCSSCDDSDLSIHHIDGATTL 120

Query: 121 EAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
                 N +   +D+  LE+EMW +F   GFWRS SQ+ +
Sbjct: 121 AVVDGGNSLKSDKDVVALEKEMWSKFYGAGFWRSPSQKSD 158

[Close]

BLAST of Cla018909 vs. NCBI nr
Match: gi|700208795|gb|KGN63891.1| (hypothetical protein Csa_1G025240 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 7.5e-66
Identity = 123/151 (81.46%), Postives = 138/151 (91.39%), Query Frame = 1


Query: 1   MTRKVLLRSPAIRHKSSLQDEKIDASRERRQFAEVAGGSAAECTAICCCCPWTVLNIVIF 60
           MTRKVLLRS AIRH+S L+D KIDA RERRQFAEVAGGSAAECTA+CCCCPWTVLNI+IF
Sbjct: 1   MTRKVLLRSAAIRHRSPLRDGKIDAPRERRQFAEVAGGSAAECTAVCCCCPWTVLNILIF 60

Query: 61  AVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGPAMESFEAHKTTNDV 120
           A+YRMPAGLCRKAINRRKRHR+MK+K+LIQQRKAAS DFTDGSVGP ++ +  H+  NDV
Sbjct: 61  AIYRMPAGLCRKAINRRKRHRRMKRKYLIQQRKAASEDFTDGSVGPIIDGYGTHE-ANDV 120

Query: 121 ADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
           A  EDLKKLE+EMWGRF+QTGFWRSSSQRH+
Sbjct: 121 AAGEDLKKLEDEMWGRFSQTGFWRSSSQRHK 150

[Close]

BLAST of Cla018909 vs. NCBI nr
Match: gi|848931198|ref|XP_012828685.1| (PREDICTED: uncharacterized protein LOC105949925 [Erythranthe guttata])

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 1


Query: 1   MTRKVLLRSPAIRHKSSLQDEKIDAS-----RERRQFAEVAGGSAAECTAICCCCPWTVL 60
           MTR++ +RSPA+  + S   E+ D S     R + + AEVAGG+AAEC A+CCCCP  ++
Sbjct: 1   MTRQMTMRSPALDRRQSPLLERSDYSSRGGARNKVRLAEVAGGTAAECAAVCCCCPCGLV 60

Query: 61  NIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGPAMESFEAHK 120
           N+++ AVY++PAGLCRKA+ RRKRHR++ KK L+ QRK    D  +  + P         
Sbjct: 61  NLIVLAVYKLPAGLCRKAL-RRKRHRRLLKKGLLPQRK-CGCDENEFQIHPVTSPLAMVT 120

Query: 121 TTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
               V+D  ++ +LE+EMW +F   GFWRS SQR E
Sbjct: 121 ALESVSDDSEVIELEKEMWDKFYGAGFWRSPSQRTE 154

[Close]

BLAST of Cla018909 vs. NCBI nr
Match: gi|565363405|ref|XP_006348427.1| (PREDICTED: uncharacterized protein LOC102594000 [Solanum tuberosum])

HSP 1 Score: 125.2 bits (313), Expect = 9.9e-26
Identity = 65/160 (40.62%), Postives = 102/160 (63.75%), Query Frame = 1


Query: 1   MTRKVLLRSPAI----RHKSSLQDEKIDASR---ERRQFAEVAGGSAAECTAICCCCPWT 60
           MT++++LR+P+     R +  L   +  +SR    + + AEVAGG+AAEC A+CCCCP  
Sbjct: 1   MTKQIVLRAPSSLSIDRRRQPLLSNQDTSSRGGVRKARLAEVAGGTAAECAAVCCCCPCG 60

Query: 61  VLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGP--AMESF 120
           ++N+++ AVY++PAGLCRKA+ R++R R+MKKK L  Q + +S D ++ S+ P     + 
Sbjct: 61  LVNLLVMAVYKLPAGLCRKALRRKRRRRQMKKKIL--QSQCSSCDDSELSIHPIDGATTL 120

Query: 121 EAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
                 N +   +D+  LE+EMW +F   GFWRS SQ+ +
Sbjct: 121 AVVDGGNSLKSDKDVVALEKEMWSKFYGGGFWRSPSQKSD 158

[Close]

BLAST of Cla018909 vs. NCBI nr
Match: gi|969997249|ref|XP_015066929.1| (PREDICTED: uncharacterized protein LOC107011793 [Solanum pennellii])

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-25
Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 1


Query: 1   MTRKVLLRSPAI----RHKSSLQDEKIDASR---ERRQFAEVAGGSAAECTAICCCCPWT 60
           MT++++LR+P+     R +  L   +  +SR    + + AEVAGG+ AEC A+CCCCP  
Sbjct: 1   MTKQIVLRAPSSLSIDRRRQPLLSNQDTSSRGGVRKARLAEVAGGTTAECAAVCCCCPCG 60

Query: 61  VLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVGP--AMESF 120
           ++N+++ A+Y++PAGLCRKA+ R++R R MKKK L  Q + ++ D +D S+ P     + 
Sbjct: 61  LVNLLVMAIYKLPAGLCRKALRRKRRRRLMKKKIL--QSQCSNCDDSDLSIHPIDGATTL 120

Query: 121 EAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
                 N +   +D+  LE+EMW +F   GFWRS SQ+ +
Sbjct: 121 AVVDGGNSLKSDKDVVALEKEMWSKFYGAGFWRSPSQKSD 158

[Close]

BLAST of Cla018909 vs. NCBI nr
Match: gi|723655710|ref|XP_010315839.1| (PREDICTED: uncharacterized protein LOC101264148 [Solanum lycopersicum])

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 1   MTRKVLLRSPAI----RHKSSLQDEKIDASR---ERRQFAEVAGGSAAECTAICCCCPWT 60
           MT++++LR+P+     R +  L   +  +SR    + + AEVAGG+ AEC A+CCCCP  
Sbjct: 1   MTKQIVLRAPSSLSIDRRRQPLLSNQDTSSRGGVRKARLAEVAGGTTAECAAVCCCCPCG 60

Query: 61  VLNIVIFAVYRMPAGLCRKAINRRKRHRKMKKKFLIQQRKAASMDFTDGSVG--PAMESF 120
           ++N+++ A+Y++PAGLCRKA+ R++R R MKKK L  Q + +S D +D S+       + 
Sbjct: 61  LVNLLVMAIYKLPAGLCRKALRRKRRRRLMKKKIL--QSQCSSCDDSDLSIHHIDGATTL 120

Query: 121 EAHKTTNDVADVEDLKKLEEEMWGRFNQTGFWRSSSQRHE 152
                 N +   +D+  LE+EMW +F   GFWRS SQ+ +
Sbjct: 121 AVVDGGNSLKSDKDVVALEKEMWSKFYGAGFWRSPSQKSD 158

The following BLAST results are available for this feature:

BLAST of Cla018909 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV48_CUCSA	5.2e-66	81.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025240 PE=4 SV=1	[more]
A0A022PV89_ERYGU	1.3e-29	45.51	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015404mg PE=4 SV=1	[more]
A0A0V0HW38_SOLCH	4.0e-26	40.63	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1BXB9_SOLTU	6.9e-26	40.63	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021375 PE=4 SV=1	[more]
K4ASP5_SOLLC	1.0e-24	39.38	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Cla018909 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208795\|gb\|KGN63891.1\|	7.5e-66	81.46	hypothetical protein Csa_1G025240 [Cucumis sativus]	[more]
gi\|848931198\|ref\|XP_012828685.1\|	1.9e-29	45.51	PREDICTED: uncharacterized protein LOC105949925 [Erythranthe guttata]	[more]
gi\|565363405\|ref\|XP_006348427.1\|	9.9e-26	40.63	PREDICTED: uncharacterized protein LOC102594000 [Solanum tuberosum]	[more]
gi\|969997249\|ref\|XP_015066929.1\|	3.8e-25	39.38	PREDICTED: uncharacterized protein LOC107011793 [Solanum pennellii]	[more]
gi\|723655710\|ref\|XP_010315839.1\|	1.4e-24	39.38	PREDICTED: uncharacterized protein LOC101264148 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15925	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla018909	Cla018909.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15925	WMU15925	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33264	FAMILY NOT NAMED	coord: 13..151 score: 4.7
None	No IPR available	PANTHER	PTHR33264:SF5	EXPRESSED PROTEIN-RELATED	coord: 13..151 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla018909	Cla97C06G123640	Watermelon (97103) v2	wmwmbB406
Cla018909	Csa1G025240	Cucumber (Chinese Long) v2	cuwmB095
Cla018909	MELO3C017376	Melon (DHL92) v3.5.1	mewmB289
Cla018909	ClCG06G014180	Watermelon (Charleston Gray)	wcgwmB344
Cla018909	CSPI01G04500	Wild cucumber (PI 183967)	cpiwmB100
Cla018909	Cucsa.111710	Cucumber (Gy14) v1	cgywmB167
Cla018909	CmaCh11G003210	Cucurbita maxima (Rimu)	cmawmB143
Cla018909	CmoCh11G003260	Cucurbita moschata (Rifu)	cmowmB128
Cla018909	Lsi06G012670	Bottle gourd (USVL1VR-Ls)	lsiwmB414
Cla018909	Cp4.1LG04g13610	Cucurbita pepo (Zucchini)	cpewmB679
Cla018909	CsGy1G004400	Cucumber (Gy14) v2	cgybwmB095
Cla018909	MELO3C017376.2	Melon (DHL92) v3.6.1	medwmB283
Cla018909	Carg09092	Silver-seed gourd	carwmB0594
Cla018909	CsaV3_1G004500	Cucumber (Chinese Long) v3	cucwmB106

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla018909	Wax gourd	wgowmB685
Cla018909	Cucurbita maxima (Rimu)	cmawmB071
Cla018909	Cucurbita moschata (Rifu)	cmowmB063
Cla018909	Cucurbita pepo (Zucchini)	cpewmB372
Cla018909	Silver-seed gourd	carwmB0789