Cla015829 (gene) Watermelon (97103) v1

Overview
NameCla015829
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr2 : 3968813 .. 3969133 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTCTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGTGAAGATGGCAGTAATAGAAAGGCAAGGAAAAGTCAAGGAGATGGTATTGTCGTTAGCGAGGAGGCTGCAACGGTAAAGAGCAAGAAATGGCATCAACGAAGACGGGGAGGCGGTAAGGAGATAAAGATGGTGTCGTCGTCGAGGTTGCGACCGTCACAAAGAGGGAGAGTTGAGTTAGGAGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAAAAGGCATGCAAAGGCTAA

mRNA sequence

ATGGATTGTCTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGTGAAGATGGCAGTAATAGAAAGGCAAGGAAAAGTCAAGGAGATGGTATTGTCGTTAGCGAGGAGGCTGCAACGGTAAAGAGCAAGAAATGGCATCAACGAAGACGGGGAGGCGGTAAGGAGATAAAGATGGTGTCGTCGTCGAGGTTGCGACCGTCACAAAGAGGGAGAGTTGAGTTAGGAGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAAAAGGCATGCAAAGGCTAA

Coding sequence (CDS)

ATGGATTGTCTCCTTGTCAAGTGTGGGGTATCACATCAAGTGCCAAGAATTCGTGAAGATGGCAGTAATAGAAAGGCAAGGAAAAGTCAAGGAGATGGTATTGTCGTTAGCGAGGAGGCTGCAACGGTAAAGAGCAAGAAATGGCATCAACGAAGACGGGGAGGCGGTAAGGAGATAAAGATGGTGTCGTCGTCGAGGTTGCGACCGTCACAAAGAGGGAGAGTTGAGTTAGGAGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAGGCCAAAGAGAGAAAGATGAAGTTAAAGAGTTGGAAAAGGCATGCAAAGGCTAA

Protein sequence

MDCLLVKCGVSHQVPRIREDGSNRKARKSQGDGIVVSEEAATVKSKKWHQRRRGGGKEIKMVSSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACKG
Homology
[Close]
BLAST of Cla015829 vs. TrEMBL
Match: A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 1   MDCLLVKCGVSHQVPRIREDGSNRKARK-SQGDGIVVSEEAATVK-SKKWHQRRRGGGKE 60
           M+C L KCG  +QV RIREDG NRK RK  + D IV+ E   T+K S+K H+R R   KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRS--KE 60

Query: 61  IKMV-SSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACK 106
            KM+ SSSRL+ SQ  RVELGGWLAAWLEEAEG+REKDEVKELEK  K
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

[Close]
BLAST of Cla015829 vs. NCBI nr
Match: gi|700188015|gb|KGN43248.1| (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 1 

Query: 1   MDCLLVKCGVSHQVPRIREDGSNRKARK-SQGDGIVVSEEAATVK-SKKWHQRRRGGGKE 60
           M+C L KCG  +QV RIREDG NRK RK  + D IV+ E   T+K S+K H+R R   KE
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRS--KE 60

Query: 61  IKMV-SSSRLRPSQRGRVELGGWLAAWLEEAEGQREKDEVKELEKACK 106
            KM+ SSSRL+ SQ  RVELGGWLAAWLEEAEG+REKDEVKELEK  K
Sbjct: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIK 106

The following BLAST results are available for this feature:
BLAST of Cla015829 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1A5_CUCSA2.7e-2464.81Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of Cla015829 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188015|gb|KGN43248.1|3.8e-2464.81hypothetical protein Csa_7G011880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015829Cla015829.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla015829Cla97C02G030940Watermelon (97103) v2wmwmbB317
Cla015829Csa7G011880Cucumber (Chinese Long) v2cuwmB604
Cla015829ClCG02G004140Watermelon (Charleston Gray)wcgwmB198
Cla015829CSPI07G00940Wild cucumber (PI 183967)cpiwmB622
Cla015829CmaCh11G013830Cucurbita maxima (Rimu)cmawmB121
Cla015829CmoCh19G007460Cucurbita moschata (Rifu)cmowmB496
Cla015829CmoCh11G017370Cucurbita moschata (Rifu)cmowmB117
Cla015829Lsi11G011980Bottle gourd (USVL1VR-Ls)lsiwmB106
Cla015829Cp4.1LG04g05060Cucurbita pepo (Zucchini)cpewmB674
Cla015829Cp4.1LG15g05900Cucurbita pepo (Zucchini)cpewmB268
Cla015829MELO3C013358.2Melon (DHL92) v3.6.1medwmB231
Cla015829Carg19353Silver-seed gourdcarwmB0305
Cla015829CsaV3_7G000970Cucumber (Chinese Long) v3cucwmB634
Cla015829Bhi05G001474Wax gourdwgowmB272
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla015829Wax gourdwgowmB383
Cla015829Watermelon (97103) v1wmwmB073
Cla015829Watermelon (97103) v1wmwmB159
Cla015829Cucumber (Gy14) v1cgywmB436
Cla015829Cucumber (Gy14) v1cgywmB670
Cla015829Cucurbita maxima (Rimu)cmawmB503
Cla015829Cucurbita maxima (Rimu)cmawmB526
Cla015829Cucurbita maxima (Rimu)cmawmB597
Cla015829Cucurbita moschata (Rifu)cmowmB158
Cla015829Cucurbita moschata (Rifu)cmowmB514
Cla015829Cucurbita moschata (Rifu)cmowmB591
Cla015829Melon (DHL92) v3.5.1mewmB112
Cla015829Melon (DHL92) v3.5.1mewmB239
Cla015829Watermelon (Charleston Gray)wcgwmB209
Cla015829Watermelon (Charleston Gray)wcgwmB422
Cla015829Cucumber (Chinese Long) v2cuwmB150
Cla015829Cucurbita pepo (Zucchini)cpewmB115
Cla015829Cucurbita pepo (Zucchini)cpewmB304
Cla015829Cucurbita pepo (Zucchini)cpewmB743
Cla015829Cucurbita pepo (Zucchini)cpewmB808
Cla015829Bottle gourd (USVL1VR-Ls)lsiwmB079
Cla015829Cucumber (Gy14) v2cgybwmB141
Cla015829Cucumber (Gy14) v2cgybwmB566
Cla015829Melon (DHL92) v3.6.1medwmB110
Cla015829Silver-seed gourdcarwmB0137
Cla015829Silver-seed gourdcarwmB0335
Cla015829Silver-seed gourdcarwmB0813
Cla015829Silver-seed gourdcarwmB0985
Cla015829Silver-seed gourdcarwmB1025
Cla015829Cucumber (Chinese Long) v3cucwmB160
Cla015829Watermelon (97103) v2wmwmbB327
Cla015829Watermelon (97103) v2wmwmbB349