CmoCh19G007460 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G007460
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 7644917 .. 7646933 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTTTCATTGTTTGTGGCGTATCACGTCAAGCGATGAGAATTCAGGCAGATAACAACAAGAGAAAGGTAAAGAAAGTTGTAAGAGATGGCATTGTCATCGATGAGACGCCTACGACAACGAAAGGCAAGAAATGGCAACGACGTCGGAGACGGGTGGGCGATAACGAGAGAGAAACGGCGGCGGAAGAGACGTCGAGACTACAACGAACCGAAGGAGGGAGAGTTGAGTCGGGTGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAATGAAGGAGTTGGAGAAGGCGCATGCAAAGGGCGTAGAAAATTTAAGGGGTTGAAGGGGTTGGCTCATATTCTTTAAATTTTAATTTCTTTTTAAAATGGATATTTATAATTTTAATTATTAAATTATAAACTTAATTAAAATTAAATAAATTTTTTTAATTTTATATCTAATAATTTTTTTATTTTTCCGCGTTATAAATTTAAACTTTTATTTAACACAAAATTAAAAAGTCGAGTGGTCGAGAAATTTTAAATTATGAATGTTAAAATAATAAACTTTATTATTTTTTTAATCATGATTAAGTGAATTTTTCTATTTTTTTTTTCGAACCGGCCAATATTTTCTTATTCTCCACCAATGTCTGGAATTGTGATGTCCCACATTGGTTGGGAGGAGAACAAACCACCATTTATATAAGGGTGTGGAAACCTTCTCCTAGCAGACGCGTTTTAAACCCTTGAGGGGAAGCCCGAAAGGAAAAGCCTAAAGAGGACAATATCTGCTGGTGAAGAGCTTTTTGCTCTTCACCGAAGGGGGTAGACACGAGGCAATGTGTCAGTAAGGACACTGGCCCCAAAGGGGGTGGATTTGGGGGCGGTCCCACATTATTGAGTGGAGGAAGGAAAAAGTGCCAGTGATGACGTTGGGCGTGGAAACCTTCCCTAGTAGACGCTTTTTAAAGCCTTGAAGGGAAGCTCGAAAAGCTCGAAAGGGAAAGCCCAAATAGGACAATATCTGCTAGTGGTGAGTCTTCCCCTCAATGGAAAGCCCAAATAGGACACTATCGGCTAGCGGTGAGTCTGGATCGTTACACGAATATTTAAAAATTATGGGTCTTAGCGAAAGCTAAACCTTACACATTTACGATTCTTAAAAGAACATTAAAATGAAGATGCCAGTGTTCGTAAACTACAAAGGAGAAAACATCAGCGTTTTAGAAAAATTAGGGTTTTTTTTTCATCGTACGGTTATTCGCTTGATCGATTTTCGTTGATTTTGATGGATCGATAATTTTATAATTTTTTTTATTTTTGATACCCAAATTAAGAATTTTAATTTTCCCCTCACACAAAATTATTAATTTTATAATTGGATAATAAATTTTAATTAGAACTAAATAGAAAAAGGGAATAAATAGAAATTTTCGCTTTTTTAATCATTAAATAAAATCGGAACTATTTGACGGTCTTGATTTGAGCGGGGCCCACAAATGTCAGTATTTGTTGCGAAATTACATTTCTGTCCTCCAAAGATTTGTAAAATTACCTTCATCGGCATCCAATGACAAACAGAAATTCTCTATCTCAGAGAAAAGTATGAAAAATTAATGGAATTCCTGAAACCATTGATGGATTTTGGTCCTTTCCCTTTCCCTTTCGCTGAATGTTCTTCACCGATGTGGTAACCCTAGGGTTTCTCTTCTTAATCCATTTTCTCCTCTGATTTCGCAGTTAATTTCAAATGCTTCGGTTTCTGTTCGATTGTAGGCTGTTCGAATGATTTCTGTGGCGGTTTTGTCGGTGAGCATTGCTTTGTTTTTTGGTGCTTTTGATTAATGCGGCGGCGTGAATATTAGTAGATTCATTAATTGTTCTTCGTTGGTTGACTTGACTGTATTAGTGAAATTCCCTAGGTAGGATTAATGAGTTTTGTAATCGGCTTTTATGACCTTAGCAAGATTTCGTGACTGATTGTGGTGATTCTGAAGCTTAATTTCTGATTCAGAGTCCAGGAATTGGTAG

mRNA sequence

ATGGATTGTTTCATTGTTTGTGGCGTATCACGTCAAGCGATGAGAATTCAGGCAGATAACAACAAGAGAAAGGTAAAGAAAGTTGTAAGAGATGGCATTGTCATCGATGAGACGCCTACGACAACGAAAGGCAAGAAATGGCAACGACGTCGGAGACGGGTGGGCGATAACGAGAGAGAAACGGCGGCGGAAGAGACGTCGAGACTACAACGAACCGAAGGAGGGAGAGTTGAGTCGGGTGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAATGAAGGAGTTGGAGAAGGCGCATGCAAAGGGCGTAGAAAATTTAAGGGTTAATTTCAAATGCTTCGGTTTCTGTTCGATTGTAGGCTGTTCGAATGATTTCTGTGGCGGTTTTGTCGAGTCCAGGAATTGGTAG

Coding sequence (CDS)

ATGGATTGTTTCATTGTTTGTGGCGTATCACGTCAAGCGATGAGAATTCAGGCAGATAACAACAAGAGAAAGGTAAAGAAAGTTGTAAGAGATGGCATTGTCATCGATGAGACGCCTACGACAACGAAAGGCAAGAAATGGCAACGACGTCGGAGACGGGTGGGCGATAACGAGAGAGAAACGGCGGCGGAAGAGACGTCGAGACTACAACGAACCGAAGGAGGGAGAGTTGAGTCGGGTGGGTGGCTTGCAGCATGGTTGGAAGAGGCTGAAATGAAGGAGTTGGAGAAGGCGCATGCAAAGGGCGTAGAAAATTTAAGGGTTAATTTCAAATGCTTCGGTTTCTGTTCGATTGTAGGCTGTTCGAATGATTTCTGTGGCGGTTTTGTCGAGTCCAGGAATTGGTAG
Homology
[Close]
BLAST of CmoCh19G007460 vs. TrEMBL
Match: A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-10
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 1   MDCFIV-CGVSRQAMRIQADNNKRKVKKVVRDG-IVIDETPTTTKGKKWQRRRRRVGDNE 60
           M+CF+  CG   Q +RI+ D + RK +K+ RD  IVI E P T K  +  +  RRV   E
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISR--KGHRRVRSKE 60

Query: 61  RETAAEETSRLQRTEGGRVESGGWLAAWLEEA-------EMKELEK 98
           R+     +SRLQR++  RVE GGWLAAWLEEA       E+KELEK
Sbjct: 61  RKMMPS-SSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEK 103

[Close]
BLAST of CmoCh19G007460 vs. NCBI nr
Match: gi|700188015|gb|KGN43248.1| (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 1   MDCFIV-CGVSRQAMRIQADNNKRKVKKVVRDG-IVIDETPTTTKGKKWQRRRRRVGDNE 60
           M+CF+  CG   Q +RI+ D + RK +K+ RD  IVI E P T K  +  +  RRV   E
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISR--KGHRRVRSKE 60

Query: 61  RETAAEETSRLQRTEGGRVESGGWLAAWLEEA-------EMKELEK 98
           R+     +SRLQR++  RVE GGWLAAWLEEA       E+KELEK
Sbjct: 61  RKMMPS-SSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEK 103

The following BLAST results are available for this feature:
BLAST of CmoCh19G007460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G007460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1A5_CUCSA3.6e-1048.11Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of CmoCh19G007460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh19G007460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188015|gb|KGN43248.1|5.2e-1048.11hypothetical protein Csa_7G011880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G007460.1CmoCh19G007460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G007460Cla015829Watermelon (97103) v1cmowmB496
CmoCh19G007460ClCG02G004140Watermelon (Charleston Gray)cmowcgB459
CmoCh19G007460Lsi11G011980Bottle gourd (USVL1VR-Ls)cmolsiB457
CmoCh19G007460Cp4.1LG15g05900Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G007460CsaV3_7G000970Cucumber (Chinese Long) v3cmocucB0622
CmoCh19G007460Carg19353Silver-seed gourdcarcmoB0433
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh19G007460CmoCh11G017370Cucurbita moschata (Rifu)cmocmoB108
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G007460Cucumber (Chinese Long) v3cmocucB0591
CmoCh19G007460Watermelon (97103) v2cmowmbB509
CmoCh19G007460Watermelon (97103) v2cmowmbB512
CmoCh19G007460Wax gourdcmowgoB0653
CmoCh19G007460Wax gourdcmowgoB0665
CmoCh19G007460Cucurbita moschata (Rifu)cmocmoB383
CmoCh19G007460Cucurbita moschata (Rifu)cmocmoB386
CmoCh19G007460Cucumber (Gy14) v1cgycmoB0646
CmoCh19G007460Cucumber (Gy14) v1cgycmoB1025
CmoCh19G007460Cucurbita maxima (Rimu)cmacmoB145
CmoCh19G007460Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G007460Cucurbita maxima (Rimu)cmacmoB548
CmoCh19G007460Cucurbita maxima (Rimu)cmacmoB596
CmoCh19G007460Wild cucumber (PI 183967)cmocpiB500
CmoCh19G007460Wild cucumber (PI 183967)cmocpiB524
CmoCh19G007460Cucumber (Chinese Long) v2cmocuB492
CmoCh19G007460Cucumber (Chinese Long) v2cmocuB518
CmoCh19G007460Melon (DHL92) v3.5.1cmomeB445
CmoCh19G007460Melon (DHL92) v3.5.1cmomeB453
CmoCh19G007460Watermelon (Charleston Gray)cmowcgB458
CmoCh19G007460Watermelon (97103) v1cmowmB494
CmoCh19G007460Cucurbita pepo (Zucchini)cmocpeB484
CmoCh19G007460Cucurbita pepo (Zucchini)cmocpeB492
CmoCh19G007460Bottle gourd (USVL1VR-Ls)cmolsiB451
CmoCh19G007460Cucumber (Gy14) v2cgybcmoB202
CmoCh19G007460Cucumber (Gy14) v2cgybcmoB927
CmoCh19G007460Melon (DHL92) v3.6.1cmomedB512
CmoCh19G007460Melon (DHL92) v3.6.1cmomedB522
CmoCh19G007460Silver-seed gourdcarcmoB0472
CmoCh19G007460Silver-seed gourdcarcmoB1090
CmoCh19G007460Silver-seed gourdcarcmoB1368