Csa7G011880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G011880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 736652 .. 736975 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTCATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTAAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAG

mRNA sequence

ATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTCATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTAAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAG

Coding sequence (CDS)

ATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTCATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTAAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAG

Protein sequence

MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR*
Homology
[Close]
BLAST of Csa7G011880 vs. TrEMBL
Match: A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
           MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

[Close]
BLAST of Csa7G011880 vs. NCBI nr
Match: gi|700188015|gb|KGN43248.1| (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
           MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

The following BLAST results are available for this feature:
BLAST of Csa7G011880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1A5_CUCSA1.6e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of Csa7G011880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188015|gb|KGN43248.1|2.3e-53100.00hypothetical protein Csa_7G011880 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099622cucumber EST collection version 3.0transcribed_cluster
CU172263cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G011880.1Csa7G011880.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172263CU172263transcribed_cluster
CU099622CU099622transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 84..104
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G011880Cla015829Watermelon (97103) v1cuwmB604
Csa7G011880MELO3C013358Melon (DHL92) v3.5.1cumeB531
Csa7G011880ClCG02G004140Watermelon (Charleston Gray)cuwcgB546
Csa7G011880Lsi11G011980Bottle gourd (USVL1VR-Ls)culsiB494
Csa7G011880MELO3C013358.2Melon (DHL92) v3.6.1cumedB510
Csa7G011880Cla97C02G030940Watermelon (97103) v2cuwmbB529
Csa7G011880Bhi05G001474Wax gourdcuwgoB670
Csa7G011880CSPI07G00940Wild cucumber (PI 183967)cpicuB354
Csa7G011880Carg19353Silver-seed gourdcarcuB0342
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G011880Cucurbita maxima (Rimu)cmacuB151
Csa7G011880Cucurbita maxima (Rimu)cmacuB527
Csa7G011880Cucurbita maxima (Rimu)cmacuB573
Csa7G011880Cucurbita maxima (Rimu)cmacuB642
Csa7G011880Cucurbita moschata (Rifu)cmocuB132
Csa7G011880Cucurbita moschata (Rifu)cmocuB518
Csa7G011880Cucurbita moschata (Rifu)cmocuB561
Csa7G011880Cucurbita moschata (Rifu)cmocuB631
Csa7G011880Melon (DHL92) v3.5.1cumeB515
Csa7G011880Watermelon (Charleston Gray)cuwcgB540
Csa7G011880Watermelon (97103) v1cuwmB577
Csa7G011880Watermelon (97103) v1cuwmB599
Csa7G011880Cucurbita pepo (Zucchini)cpecuB257
Csa7G011880Cucurbita pepo (Zucchini)cpecuB299
Csa7G011880Cucurbita pepo (Zucchini)cpecuB690
Csa7G011880Bottle gourd (USVL1VR-Ls)culsiB489
Csa7G011880Cucumber (Gy14) v2cgybcuB086
Csa7G011880Cucumber (Gy14) v2cgybcuB324
Csa7G011880Melon (DHL92) v3.6.1cumedB495
Csa7G011880Silver-seed gourdcarcuB0159
Csa7G011880Silver-seed gourdcarcuB0382
Csa7G011880Silver-seed gourdcarcuB0828
Csa7G011880Silver-seed gourdcarcuB1035
Csa7G011880Watermelon (97103) v2cuwmbB522
Csa7G011880Wax gourdcuwgoB681
Csa7G011880Cucumber (Chinese Long) v2cucuB077
Csa7G011880Cucumber (Gy14) v1cgycuB331
Csa7G011880Cucumber (Gy14) v1cgycuB518