MELO3C013358 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013358
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	alternative oxidase 1D
Location	chr1 : 16054927 .. 16055220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

mRNA sequence

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

Coding sequence (CDS)

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

Protein sequence

MDCFLVKCGALNQVLRIRESGNNRKERKIQRDDIVIAEATTKLYRRRRVSASSSSSRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR*

Homology

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BLAST of MELO3C013358 vs. TrEMBL
Match: A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.9e-30
Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 1   MDCFLVKCGALNQVLRIRESGNNRKERKIQRDD-IVIAEA--TTKLYRR--RRVSASS-- 60
           M+CFL KCG LNQVLRIRE G+NRKERKI+RDD IVI EA  T K+ R+  RRV +    
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  ---SSSRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR 98
              SSSRLQRSQIERVELGGWLAAWLEEAE EREKDEVKE+EK+ KR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

[Close]

BLAST of MELO3C013358 vs. NCBI nr
Match: gi|700188015|gb|KGN43248.1| (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-30
Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 1   MDCFLVKCGALNQVLRIRESGNNRKERKIQRDD-IVIAEA--TTKLYRR--RRVSASS-- 60
           M+CFL KCG LNQVLRIRE G+NRKERKI+RDD IVI EA  T K+ R+  RRV +    
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  ---SSSRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR 98
              SSSRLQRSQIERVELGGWLAAWLEEAE EREKDEVKE+EK+ KR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

The following BLAST results are available for this feature:

BLAST of MELO3C013358 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1A5_CUCSA	3.9e-30	72.90	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1	[more]

BLAST of MELO3C013358 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188015\|gb\|KGN43248.1\|	5.6e-30	72.90	hypothetical protein Csa_7G011880 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013358T1	MELO3C013358T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 74..97 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013358	Csa7G011880	Cucumber (Chinese Long) v2	cumeB531
MELO3C013358	CSPI07G00940	Wild cucumber (PI 183967)	cpimeB539
MELO3C013358	Carg19353	Silver-seed gourd	carmeB0321
MELO3C013358	CsaV3_7G000970	Cucumber (Chinese Long) v3	cucmeB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013358	Silver-seed gourd	carmeB0353
MELO3C013358	Silver-seed gourd	carmeB0801
MELO3C013358	Silver-seed gourd	carmeB0952
MELO3C013358	Silver-seed gourd	carmeB0988
MELO3C013358	Cucumber (Chinese Long) v3	cucmeB106
MELO3C013358	Watermelon (97103) v2	mewmbB179
MELO3C013358	Watermelon (97103) v2	mewmbB184
MELO3C013358	Wax gourd	mewgoB213
MELO3C013358	Wax gourd	mewgoB231
MELO3C013358	Melon (DHL92) v3.5.1	memeB038
MELO3C013358	Cucumber (Gy14) v1	cgymeB394
MELO3C013358	Cucumber (Gy14) v1	cgymeB603
MELO3C013358	Cucurbita maxima (Rimu)	cmameB092
MELO3C013358	Cucurbita maxima (Rimu)	cmameB462
MELO3C013358	Cucurbita maxima (Rimu)	cmameB510
MELO3C013358	Cucurbita maxima (Rimu)	cmameB565
MELO3C013358	Cucurbita moschata (Rifu)	cmomeB091
MELO3C013358	Cucurbita moschata (Rifu)	cmomeB453
MELO3C013358	Cucurbita moschata (Rifu)	cmomeB503
MELO3C013358	Cucurbita moschata (Rifu)	cmomeB554
MELO3C013358	Wild cucumber (PI 183967)	cpimeB102
MELO3C013358	Cucumber (Chinese Long) v2	cumeB104
MELO3C013358	Watermelon (Charleston Gray)	mewcgB196
MELO3C013358	Watermelon (Charleston Gray)	mewcgB201
MELO3C013358	Watermelon (97103) v1	mewmB239
MELO3C013358	Watermelon (97103) v1	mewmB247
MELO3C013358	Cucurbita pepo (Zucchini)	cpemeB224
MELO3C013358	Cucurbita pepo (Zucchini)	cpemeB272
MELO3C013358	Cucurbita pepo (Zucchini)	cpemeB610
MELO3C013358	Bottle gourd (USVL1VR-Ls)	lsimeB064
MELO3C013358	Bottle gourd (USVL1VR-Ls)	lsimeB096
MELO3C013358	Cucumber (Gy14) v2	cgybmeB088
MELO3C013358	Cucumber (Gy14) v2	cgybmeB469