MELO3C013358.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C013358.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr01 : 16894430 .. 16894723 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

mRNA sequence

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

Coding sequence (CDS)

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

Protein sequence

MDCFLVKCGALNQVLRIRESGNNRKERKIQRDDIVIAEATTKLYRRRRVSASSSSSRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR
Homology
[Close]
BLAST of MELO3C013358.2 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 61/107 (57.01%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 1   MDCFLVKCGALNQVLRIRESGNNRKERKI----------XXXXXXXXXXXXXXXXXXXXX 60
           M+CFL KCG LNQVLRIRE G+NRKERKI                               
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  XXXXXXRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR 98
                 RLQRSQIERVELGGWLAAWLEEAE EREKDEVKE+EK+ KR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

[Close]
BLAST of MELO3C013358.2 vs. TrEMBL
Match: tr|A0A0A0K1A5|A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 61/107 (57.01%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 1   MDCFLVKCGALNQVLRIRESGNNRKERKI----------XXXXXXXXXXXXXXXXXXXXX 60
           M+CFL KCG LNQVLRIRE G+NRKERKI                               
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  XXXXXXRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR 98
                 RLQRSQIERVELGGWLAAWLEEAE EREKDEVKE+EK+ KR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

The following BLAST results are available for this feature:
BLAST of MELO3C013358.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43248.12.3e-1957.01hypothetical protein Csa_7G011880 [Cucumis sativus][more]
BLAST of MELO3C013358.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C013358.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C013358.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K1A5|A0A0A0K1A5_CUCSA1.5e-1957.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013358.2.1MELO3C013358.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..97

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C013358.2Csa7G011880Cucumber (Chinese Long) v2cumedB510
MELO3C013358.2CSPI07G00940Wild cucumber (PI 183967)cpimedB524
MELO3C013358.2Lsi11G011980Bottle gourd (USVL1VR-Ls)lsimedB102
MELO3C013358.2Cla015829Watermelon (97103) v1medwmB231
MELO3C013358.2ClCG02G004140Watermelon (Charleston Gray)medwcgB191
MELO3C013358.2Carg19353Silver-seed gourdcarmedB0330
MELO3C013358.2CsaV3_7G000970Cucumber (Chinese Long) v3cucmedB537
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C013358.2Silver-seed gourdcarmedB0359
MELO3C013358.2Silver-seed gourdcarmedB0813
MELO3C013358.2Silver-seed gourdcarmedB0998
MELO3C013358.2Cucumber (Chinese Long) v3cucmedB099
MELO3C013358.2Watermelon (97103) v2medwmbB170
MELO3C013358.2Watermelon (97103) v2medwmbB165
MELO3C013358.2Wax gourdmedwgoB213
MELO3C013358.2Wax gourdmedwgoB232
MELO3C013358.2Cucumber (Gy14) v2cgybmedB084
MELO3C013358.2Cucumber (Gy14) v2cgybmedB466
MELO3C013358.2Cucumber (Gy14) v1cgymedB393
MELO3C013358.2Cucumber (Gy14) v1cgymedB600
MELO3C013358.2Cucurbita maxima (Rimu)cmamedB100
MELO3C013358.2Cucurbita maxima (Rimu)cmamedB536
MELO3C013358.2Cucurbita maxima (Rimu)cmamedB587
MELO3C013358.2Cucurbita maxima (Rimu)cmamedB645
MELO3C013358.2Cucurbita moschata (Rifu)cmomedB097
MELO3C013358.2Cucurbita moschata (Rifu)cmomedB522
MELO3C013358.2Cucurbita moschata (Rifu)cmomedB578
MELO3C013358.2Cucurbita moschata (Rifu)cmomedB633
MELO3C013358.2Cucurbita pepo (Zucchini)cpemedB262
MELO3C013358.2Cucurbita pepo (Zucchini)cpemedB318
MELO3C013358.2Cucurbita pepo (Zucchini)cpemedB722
MELO3C013358.2Cucurbita pepo (Zucchini)cpemedB814
MELO3C013358.2Wild cucumber (PI 183967)cpimedB098
MELO3C013358.2Cucumber (Chinese Long) v2cumedB098
MELO3C013358.2Melon (DHL92) v3.6.1medmedB037
MELO3C013358.2Bottle gourd (USVL1VR-Ls)lsimedB069
MELO3C013358.2Watermelon (Charleston Gray)medwcgB196
MELO3C013358.2Watermelon (97103) v1medwmB238