MELO3C013358.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013358.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 16894430 .. 16894723 (-)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

mRNA sequence

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

Coding sequence (CDS)

ATGGATTGTTTCCTTGTCAAGTGTGGGGCATTAAATCAAGTGCTAAGAATTAGAGAATCTGGTAATAACAGAAAGGAAAGAAAAATACAAAGAGATGATATTGTCATTGCCGAGGCAACAACAAAGTTGTATCGACGAAGACGAGTGTCAGCATCGTCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCGGCGTGGTTGGAAGAGGCCGAAGCAGAAAGAGAGAAAGATGAAGTTAAGGAAATGGAGAAGGATAGCAAAAGGTAA

Protein sequence

MDCFLVKCGALNQVLRIRESGNNRKERKIQRDDIVIAEATTKLYRRRRVSASSSSSRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR

Homology

[Close]

BLAST of MELO3C013358.2.1 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 61/107 (57.01%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   MDCFLVKCGALNQVLRIRESGNNRKERKI----------XXXXXXXXXXXXXXXXXXXXX 60
           M+CFL KCG LNQVLRIRE G+NRKERKI                               
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  XXXXXXRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR 98
                 RLQRSQIERVELGGWLAAWLEEAE EREKDEVKE+EK+ KR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

[Close]

BLAST of MELO3C013358.2.1 vs. TrEMBL
Match: tr|A0A0A0K1A5|A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 61/107 (57.01%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   MDCFLVKCGALNQVLRIRESGNNRKERKI----------XXXXXXXXXXXXXXXXXXXXX 60
           M+CFL KCG LNQVLRIRE G+NRKERKI                               
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  XXXXXXRLQRSQIERVELGGWLAAWLEEAEAEREKDEVKEMEKDSKR 98
                 RLQRSQIERVELGGWLAAWLEEAE EREKDEVKE+EK+ KR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

The following BLAST results are available for this feature:

BLAST of MELO3C013358.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43248.1	2.3e-19	57.01	hypothetical protein Csa_7G011880 [Cucumis sativus]	[more]

BLAST of MELO3C013358.2.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C013358.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C013358.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K1A5\|A0A0A0K1A5_CUCSA	1.5e-19	57.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C013358.2	MELO3C013358.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013358.2.1.exon.1	MELO3C013358.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C013358.2.1.CDS.1	MELO3C013358.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C013358.2.1	MELO3C013358.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..97