CmaCh11G013830 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh11G013830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr11 : 9120028 .. 9120911 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTGTTTCTTTGTCAAGCGCGGAGGCTCACGTCAAGTGCCAAAGATTCACAACGATGATGGTAGCAAGAAGCCAATGGAAACTCAACGAGATAATACCATTGGTGAGGCGCCTGTAGAAATAAGCAACCAGAGACAACGCCAACGACAAGTAGATAGTAAGGAGAGAAAGACGACGTCGTCGATGGTGCAGGGACGAGGAGGGAGAAGTGAGTCGAGCGGGTGGCTTGCAGCATGGTTGGAAGAGGCGGAAGGTCATGGGGAGAAAAATGAAATAAAGGTCTCGAAGGAGGCAATCTAGAGGTGAATGCTAAAGGGATGATTTTGTATGAGTCGGGTGAATTTTGTGTCCTAACTTTGTTCCATTAATATTTTTTAATTTTCTTATTATTTTATTAAAAATACTCTTATTAAAAAATAACTGACCCAACTTAACCCGAAAATAGAGAATTGAGTTATAAAATTTGCTAGTAAAGAGAATAATTGAAAGTGATGGATTTTTAAAAAAAAAAAATCTTACTATTTTGACGGTCCTGATTTGATTCGATCGCACCTGAGAAATCGGGCGGACCCACAAATGTCAGTTTATCGTACTGTTAAAAGCAGCCAATAATTTCCCTTATTGTTTACGAAATTACATTTCTGTCCTTCAAAAACTTGTAAATTTATCTTCAATGGCGTCCATTGAAGATTTCAGACGCTTCGATTTTCATTTTTTCCCTCTCTGTTCTTCCTTGTTCATGTCTTTTCCAATTAGGTTTTCGTTTTACATTTATCAAATGCTCTCTTTTCCCTTCGATTTCGTTTCGATTTCATGGTTTGATTTCTTTAGCGGTTTTATCTGGTAAGCATTGCCTCGTTTTCATGGCGCTTTTTGATTAA

mRNA sequence

ATGGCTTGTTTCTTTGTCAAGCGCGGAGGCTCACGTCAAGTGCCAAAGATTCACAACGATGATGGTAGCAAGAAGCCAATGGAAACTCAACGAGATAATACCATTGGTGAGGCGCCTGTAGAAATAAGCAACCAGAGACAACGCCAACGACAAGTAGATAGTAAGGAGAGAAAGACGACGTCGTCGATGGTGCAGGGACGAGGAGGGAGAAGTGAGTCGAGCGGGTGGCTTGCAGCATGGTTGGAAGAGGCGGAAGGTCATGGGGAGAAAAATGAAATAAAGATTTCAGACGCTTCGATTTTCATTTTTTCCCTCTCTGTTCTTCCTTGTTCATGTCTTTTCCAATTAGGTTTTCGTTTTACATTTATCAAATGCTCTCTTTTCCCTTCGATTTCGTTTCGATTTCATGGTTTGATTTCTTTAGCGGTTTTATCTGGTAAGCATTGCCTCGTTTTCATGGCGCTTTTTGATTAA

Coding sequence (CDS)

ATGGCTTGTTTCTTTGTCAAGCGCGGAGGCTCACGTCAAGTGCCAAAGATTCACAACGATGATGGTAGCAAGAAGCCAATGGAAACTCAACGAGATAATACCATTGGTGAGGCGCCTGTAGAAATAAGCAACCAGAGACAACGCCAACGACAAGTAGATAGTAAGGAGAGAAAGACGACGTCGTCGATGGTGCAGGGACGAGGAGGGAGAAGTGAGTCGAGCGGGTGGCTTGCAGCATGGTTGGAAGAGGCGGAAGGTCATGGGGAGAAAAATGAAATAAAGATTTCAGACGCTTCGATTTTCATTTTTTCCCTCTCTGTTCTTCCTTGTTCATGTCTTTTCCAATTAGGTTTTCGTTTTACATTTATCAAATGCTCTCTTTTCCCTTCGATTTCGTTTCGATTTCATGGTTTGATTTCTTTAGCGGTTTTATCTGGTAAGCATTGCCTCGTTTTCATGGCGCTTTTTGATTAA

Protein sequence

MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDNTIGEAPVEISNQRQRQRQVDSKERKTTSSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIKISDASIFIFSLSVLPCSCLFQLGFRFTFIKCSLFPSISFRFHGLISLAVLSGKHCLVFMALFD
Homology
[Close]
BLAST of CmaCh11G013830 vs. TrEMBL
Match: A0A0A0K1A5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-09
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 1  MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDN--TIGEAPVEISNQRQRQRQVDSKERK 60
          M CF  K G   QV +I  D  ++K  + +RD+   IGEAP  +   R+  R+V SKERK
Sbjct: 1  MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61 ---TTSSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIK 95
             ++S + + +  R E  GWLAAWLEEAEG  EK+E+K
Sbjct: 61 MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVK 99

[Close]
BLAST of CmaCh11G013830 vs. NCBI nr
Match: gi|700188015|gb|KGN43248.1| (hypothetical protein Csa_7G011880 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 5.1e-09
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 1  MACFFVKRGGSRQVPKIHNDDGSKKPMETQRDN--TIGEAPVEISNQRQRQRQVDSKERK 60
          M CF  K G   QV +I  D  ++K  + +RD+   IGEAP  +   R+  R+V SKERK
Sbjct: 1  MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61 ---TTSSMVQGRGGRSESSGWLAAWLEEAEGHGEKNEIK 95
             ++S + + +  R E  GWLAAWLEEAEG  EK+E+K
Sbjct: 61 MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVK 99

The following BLAST results are available for this feature:
BLAST of CmaCh11G013830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh11G013830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1A5_CUCSA3.6e-0944.44Uncharacterized protein OS=Cucumis sativus GN=Csa_7G011880 PE=4 SV=1[more]
BLAST of CmaCh11G013830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh11G013830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188015|gb|KGN43248.1|5.1e-0944.44hypothetical protein Csa_7G011880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G013830.1CmaCh11G013830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh11G013830Cla015829Watermelon (97103) v1cmawmB121
CmaCh11G013830ClCG02G004140Watermelon (Charleston Gray)cmawcgB097
CmaCh11G013830CmoCh11G017370Cucurbita moschata (Rifu)cmacmoB117
CmaCh11G013830Lsi11G011980Bottle gourd (USVL1VR-Ls)cmalsiB100
CmaCh11G013830Cp4.1LG04g05060Cucurbita pepo (Zucchini)cmacpeB154
CmaCh11G013830CsaV3_7G000970Cucumber (Chinese Long) v3cmacucB0176
CmaCh11G013830Cla97C02G030940Watermelon (97103) v2cmawmbB101
CmaCh11G013830Bhi05G001474Wax gourdcmawgoB0115
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh11G013830Cucumber (Gy14) v2cgybcmaB165
CmaCh11G013830Cucumber (Gy14) v2cgybcmaB899
CmaCh11G013830Melon (DHL92) v3.6.1cmamedB092
CmaCh11G013830Melon (DHL92) v3.6.1cmamedB100
CmaCh11G013830Silver-seed gourdcarcmaB0439
CmaCh11G013830Silver-seed gourdcarcmaB0483
CmaCh11G013830Silver-seed gourdcarcmaB1408
CmaCh11G013830Cucumber (Chinese Long) v3cmacucB0137
CmaCh11G013830Watermelon (97103) v2cmawmbB107
CmaCh11G013830Wax gourdcmawgoB0131
CmaCh11G013830Cucurbita maxima (Rimu)cmacmaB151
CmaCh11G013830Cucurbita maxima (Rimu)cmacmaB155
CmaCh11G013830Cucurbita maxima (Rimu)cmacmaB162
CmaCh11G013830Cucumber (Gy14) v1cgycmaB0644
CmaCh11G013830Cucumber (Gy14) v1cgycmaB1026
CmaCh11G013830Cucurbita moschata (Rifu)cmacmoB145
CmaCh11G013830Cucurbita moschata (Rifu)cmacmoB149
CmaCh11G013830Cucurbita moschata (Rifu)cmacmoB155
CmaCh11G013830Wild cucumber (PI 183967)cmacpiB118
CmaCh11G013830Wild cucumber (PI 183967)cmacpiB149
CmaCh11G013830Cucumber (Chinese Long) v2cmacuB121
CmaCh11G013830Cucumber (Chinese Long) v2cmacuB151
CmaCh11G013830Melon (DHL92) v3.5.1cmameB084
CmaCh11G013830Melon (DHL92) v3.5.1cmameB092
CmaCh11G013830Watermelon (Charleston Gray)cmawcgB104
CmaCh11G013830Watermelon (97103) v1cmawmB130
CmaCh11G013830Cucurbita pepo (Zucchini)cmacpeB118
CmaCh11G013830Cucurbita pepo (Zucchini)cmacpeB123
CmaCh11G013830Bottle gourd (USVL1VR-Ls)cmalsiB089