Cla015434 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015434
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 1557764 .. 1558003 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTAA

mRNA sequence

ATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTAA

Coding sequence (CDS)

ATGTGTTATCCAGCCGTTCCTCTTCACAGAGCCACCGCCTTCGGCTTCGCCGGCCCCGGAAGGCCGCTTGTAGCGCCGGCACAGGAGGTCGTCCGGCAGCAGAAAAGTGGCGGTGATGGTGGTGGAAACAAGTGTATTTGCTCGCCGACTACCCACCCAGGTTCTTTCAGATGTAGATTTCATCAAAGAGATTATAGATGGGTTAGTCGGTCGAGATTTTCAAAACCCCACAAGGTTTAA

Protein sequence

MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHKV

Homology

[Close]

BLAST of Cla015434 vs. TrEMBL
Match: A0A0A0KAE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-23
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 1  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRF 60
          MCYP +P HR TAF FA  GR +VA  +E VRQQ+SGG   G KCICSPTTHPGSF+CRF
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGG---GYKCICSPTTHPGSFKCRF 60

Query: 61 HQRDYRWVSRSRFSK 76
          HQ DY+WVSRS  SK
Sbjct: 61 HQGDYKWVSRSTTSK 72

[Close]

BLAST of Cla015434 vs. TrEMBL
Match: A0A022QBQ3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018247mg PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-08
Identity = 36/83 (43.37%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 1  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVV-------RQQKSGGDGGGNK------CIC 60
          MCYP V       +  A   R L+APA E         RQ+ + G GGG        C+C
Sbjct: 1  MCYPQVAYWEG-GYKCATRRRQLIAPAAEADTEVAVRGRQEANTGGGGGGGGGMTKVCVC 60

Query: 61 SPTTHPGSFRCRFHQRDYRWVSR 71
          SPT HPGSFRCR H  +Y+WV+R
Sbjct: 61 SPTGHPGSFRCRHHHGEYQWVNR 82

[Close]

BLAST of Cla015434 vs. TrEMBL
Match: D7LFC8_ARALL (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481219 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.9e-08
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 24 VAPAQEVVRQQKSGGDGGGNK--CICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHK 79
          VA   E     +SGGDGG  K  C+CSP+ HP SF+CR+HQ +Y+W+  S  S  HK
Sbjct: 27 VATDVEATAGHRSGGDGGDGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSLHK 83

[Close]

BLAST of Cla015434 vs. TrEMBL
Match: A0A0J8BHB2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g220700 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-07
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 1  MCYPAVPLHRATAFGFAGPGRP--LVAPAQEVVRQQ---KSGGDGGGNKCICSPTTHPGS 60
          MCYP V L + T     G  R   +V  A+  V+++       DG   +C+CSPT+HPGS
Sbjct: 1  MCYPIVQLPKGTDDSRRGEWRTPRMVVQAEVAVQREVVISGSNDGRERQCVCSPTSHPGS 60

Query: 61 FRCRFHQRDYRWVSRS 72
          FRCR H+ +Y W S +
Sbjct: 61 FRCRNHRANYNWTSHA 76

[Close]

BLAST of Cla015434 vs. TrEMBL
Match: A0MDJ2_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 24 VAPAQEVVRQQKSGGDGGGNK--CICSPTTHPGSFRCRFHQRDYRWVSRSRFS 75
          VA   E     +SGGDGGG K  C+CSP+ HP SF+CR+HQ +Y+W+  S  S
Sbjct: 27 VATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSS 79

[Close]

BLAST of Cla015434 vs. NCBI nr
Match: gi|700190124|gb|KGN45357.1| (hypothetical protein Csa_7G446750 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 1  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVVRQQKSGGDGGGNKCICSPTTHPGSFRCRF 60
          MCYP +P HR TAF FA  GR +VA  +E VRQQ+SGG   G KCICSPTTHPGSF+CRF
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGG---GYKCICSPTTHPGSFKCRF 60

Query: 61 HQRDYRWVSRSRFSK 76
          HQ DY+WVSRS  SK
Sbjct: 61 HQGDYKWVSRSTTSK 72

[Close]

BLAST of Cla015434 vs. NCBI nr
Match: gi|604305549|gb|EYU24693.1| (hypothetical protein MIMGU_mgv1a018247mg [Erythranthe guttata])

HSP 1 Score: 64.7 bits (156), Expect = 8.3e-08
Identity = 36/83 (43.37%), Postives = 44/83 (53.01%), Query Frame = 1


Query: 1  MCYPAVPLHRATAFGFAGPGRPLVAPAQEVV-------RQQKSGGDGGGNK------CIC 60
          MCYP V       +  A   R L+APA E         RQ+ + G GGG        C+C
Sbjct: 1  MCYPQVAYWEG-GYKCATRRRQLIAPAAEADTEVAVRGRQEANTGGGGGGGGGMTKVCVC 60

Query: 61 SPTTHPGSFRCRFHQRDYRWVSR 71
          SPT HPGSFRCR H  +Y+WV+R
Sbjct: 61 SPTGHPGSFRCRHHHGEYQWVNR 82

[Close]

BLAST of Cla015434 vs. NCBI nr
Match: gi|297821615|ref|XP_002878690.1| (hypothetical protein ARALYDRAFT_481219 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 24 VAPAQEVVRQQKSGGDGGGNK--CICSPTTHPGSFRCRFHQRDYRWVSRSRFSKPHK 79
          VA   E     +SGGDGG  K  C+CSP+ HP SF+CR+HQ +Y+W+  S  S  HK
Sbjct: 27 VATDVEATAGHRSGGDGGDGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSLHK 83

[Close]

BLAST of Cla015434 vs. NCBI nr
Match: gi|870848501|gb|KMT00790.1| (hypothetical protein BVRB_9g220700 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-07
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1


Query: 1  MCYPAVPLHRATAFGFAGPGRP--LVAPAQEVVRQQ---KSGGDGGGNKCICSPTTHPGS 60
          MCYP V L + T     G  R   +V  A+  V+++       DG   +C+CSPT+HPGS
Sbjct: 1  MCYPIVQLPKGTDDSRRGEWRTPRMVVQAEVAVQREVVISGSNDGRERQCVCSPTSHPGS 60

Query: 61 FRCRFHQRDYRWVSRS 72
          FRCR H+ +Y W S +
Sbjct: 61 FRCRNHRANYNWTSHA 76

[Close]

BLAST of Cla015434 vs. NCBI nr
Match: gi|116830075|gb|ABK27995.1| (unknown [Arabidopsis thaliana])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-07
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1


Query: 24 VAPAQEVVRQQKSGGDGGGNK--CICSPTTHPGSFRCRFHQRDYRWVSRSRFS 75
          VA   E     +SGGDGGG K  C+CSP+ HP SF+CR+HQ +Y+W+  S  S
Sbjct: 27 VATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSS 79

The following BLAST results are available for this feature:

BLAST of Cla015434 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE1_CUCSA	8.3e-23	69.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446750 PE=4 SV=1	[more]
A0A022QBQ3_ERYGU	5.8e-08	43.37	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018247mg PE=4 SV=1	[more]
D7LFC8_ARALL	9.9e-08	49.12	Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata ...	[more]
A0A0J8BHB2_BETVU	1.3e-07	40.79	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g220700 PE=4 S...	[more]
A0MDJ2_ARATH	2.2e-07	50.94	Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of Cla015434 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190124\|gb\|KGN45357.1\|	1.2e-22	69.33	hypothetical protein Csa_7G446750 [Cucumis sativus]	[more]
gi\|604305549\|gb\|EYU24693.1\|	8.3e-08	43.37	hypothetical protein MIMGU_mgv1a018247mg [Erythranthe guttata]	[more]
gi\|297821615\|ref\|XP_002878690.1\|	1.4e-07	49.12	hypothetical protein ARALYDRAFT_481219 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|870848501\|gb\|KMT00790.1\|	1.9e-07	40.79	hypothetical protein BVRB_9g220700 isoform B [Beta vulgaris subsp. vulgaris]	[more]
gi\|116830075\|gb\|ABK27995.1\|	3.2e-07	50.94	unknown [Arabidopsis thaliana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU28722	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015434	Cla015434.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU28722	WMU28722	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015434	Cla97C09G164260	Watermelon (97103) v2	wmwmbB041
Cla015434	Csa7G446750	Cucumber (Chinese Long) v2	cuwmB566
Cla015434	MELO3C024233	Melon (DHL92) v3.5.1	mewmB198
Cla015434	CSPI07G21300	Wild cucumber (PI 183967)	cpiwmB585
Cla015434	Cucsa.359030	Cucumber (Gy14) v1	cgywmB647
Cla015434	MELO3C024233.2	Melon (DHL92) v3.6.1	medwmB194
Cla015434	CsaV3_7G033200	Cucumber (Chinese Long) v3	cucwmB591
Cla015434	Bhi02G000931	Wax gourd	wgowmB651

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015434	Melon (DHL92) v3.6.1	medwmB342
Cla015434	Silver-seed gourd	carwmB0117
Cla015434	Silver-seed gourd	carwmB0123
Cla015434	Silver-seed gourd	carwmB0187
Cla015434	Silver-seed gourd	carwmB0743
Cla015434	Silver-seed gourd	carwmB1028
Cla015434	Cucumber (Chinese Long) v3	cucwmB198
Cla015434	Watermelon (97103) v2	wmwmbB037
Cla015434	Wax gourd	wgowmB167
Cla015434	Wax gourd	wgowmB585
Cla015434	Watermelon (97103) v1	wmwmB013
Cla015434	Cucurbita maxima (Rimu)	cmawmB043
Cla015434	Cucurbita maxima (Rimu)	cmawmB087
Cla015434	Cucurbita maxima (Rimu)	cmawmB220
Cla015434	Cucurbita maxima (Rimu)	cmawmB328
Cla015434	Cucurbita maxima (Rimu)	cmawmB405
Cla015434	Cucurbita maxima (Rimu)	cmawmB858
Cla015434	Cucurbita moschata (Rifu)	cmowmB035
Cla015434	Cucurbita moschata (Rifu)	cmowmB077
Cla015434	Cucurbita moschata (Rifu)	cmowmB208
Cla015434	Cucurbita moschata (Rifu)	cmowmB322
Cla015434	Cucurbita moschata (Rifu)	cmowmB399
Cla015434	Cucurbita moschata (Rifu)	cmowmB845
Cla015434	Melon (DHL92) v3.5.1	mewmB344
Cla015434	Watermelon (Charleston Gray)	wcgwmB007
Cla015434	Watermelon (Charleston Gray)	wcgwmB355
Cla015434	Cucurbita pepo (Zucchini)	cpewmB131
Cla015434	Cucurbita pepo (Zucchini)	cpewmB313
Cla015434	Cucurbita pepo (Zucchini)	cpewmB346
Cla015434	Cucurbita pepo (Zucchini)	cpewmB536
Cla015434	Bottle gourd (USVL1VR-Ls)	lsiwmB176
Cla015434	Bottle gourd (USVL1VR-Ls)	lsiwmB426
Cla015434	Cucumber (Gy14) v2	cgybwmB174
Cla015434	Cucumber (Gy14) v2	cgybwmB528